Wall clock time and date at job start Wed Apr 15 2020 11:47:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53002 * 109.61627 * 2 1 4 4 O 1.43233 * 109.62510 * 120.37176 * 2 1 3 5 5 C 1.43976 * 107.71152 * 121.33262 * 4 2 1 6 6 H 1.09005 * 113.77880 * 142.98329 * 5 4 2 7 7 O 1.44002 * 108.59100 * 269.93337 * 5 4 2 8 8 C 1.43462 * 107.87415 * 146.44285 * 7 5 4 9 9 H 1.08996 * 109.86629 * 93.73477 * 8 7 5 10 10 C 1.53001 * 109.86249 * 214.82480 * 8 7 5 11 11 H 1.08993 * 109.47436 * 182.93649 * 10 8 7 12 12 O 1.42902 * 109.47176 * 62.93650 * 10 8 7 13 13 C 1.50702 * 109.47095 * 302.94248 * 10 8 7 14 14 H 1.08005 * 119.99775 * 359.97438 * 13 10 8 15 15 C 1.37872 * 119.99939 * 179.97438 * 13 10 8 16 16 N 1.31515 * 119.99822 * 179.97438 * 15 13 10 17 17 Si 1.86791 * 120.00342 * 359.97438 * 15 13 10 18 18 H 1.48498 * 109.47082 * 90.00079 * 17 15 13 19 19 H 1.48501 * 109.47605 * 210.00149 * 17 15 13 20 20 H 1.48507 * 109.47250 * 330.00184 * 17 15 13 21 21 C 1.53934 * 107.40047 * 334.27703 * 8 7 5 22 22 H 1.09002 * 110.39106 * 244.53517 * 21 8 7 23 23 N 1.46500 * 110.48317 * 122.20150 * 21 8 7 24 24 N 1.12397 * 120.00222 * 68.05904 * 23 21 8 25 25 N 6.78946 * 122.16667 * 208.31835 * 2 1 3 26 26 C 1.54296 * 104.71490 * 3.34485 * 21 8 7 27 27 H 1.08999 * 113.62681 * 141.46138 * 26 21 8 28 28 O 1.43633 * 109.62224 * 239.79858 * 2 1 3 29 29 H 1.09003 * 109.47073 * 301.07659 * 1 2 3 30 30 H 1.08994 * 109.47525 * 61.08467 * 1 2 3 31 31 H 1.09006 * 109.46763 * 181.08323 * 1 2 3 32 32 H 1.08998 * 109.47398 * 178.91491 * 3 2 1 33 33 H 1.09001 * 109.47458 * 298.92109 * 3 2 1 34 34 H 1.09004 * 109.46945 * 58.91810 * 3 2 1 35 35 H 0.96701 * 114.00278 * 300.00938 * 12 10 8 36 36 H 0.96994 * 120.00303 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0437 1.4412 0.0000 4 8 2.0111 -0.6821 1.1640 5 6 2.8300 -1.7803 0.7209 6 1 3.6993 -1.9632 1.3527 7 8 1.9933 -2.9412 0.5602 8 6 2.5129 -3.7104 -0.5337 9 1 3.1948 -4.4737 -0.1589 10 6 1.3629 -4.3680 -1.2993 11 1 1.7670 -4.9921 -2.0963 12 8 0.5266 -3.3563 -1.8641 13 6 0.5534 -5.2198 -0.3557 14 1 0.8316 -5.2858 0.6858 15 6 -0.5422 -5.9147 -0.8220 16 7 -1.2484 -6.6584 0.0014 17 14 -1.0238 -5.8000 -2.6231 18 1 -0.3322 -6.8675 -3.3893 19 1 -2.4933 -5.9693 -2.7544 20 1 -0.6289 -4.4719 -3.1575 21 6 3.2704 -2.7412 -1.4591 22 1 2.7806 -2.6834 -2.4312 23 7 4.6640 -3.1654 -1.6153 24 7 4.9043 -4.1124 -2.1708 25 7 5.1447 -5.0595 -2.7263 26 6 3.2008 -1.3778 -0.7401 27 1 4.1183 -0.7947 -0.8196 28 8 2.0124 -0.6806 -1.1693 29 1 -0.3633 0.5305 0.8802 30 1 -0.3634 0.4969 -0.8995 31 1 -0.3633 -1.0276 0.0194 32 1 3.1335 1.4386 0.0195 33 1 1.6976 1.9504 -0.8995 34 1 1.6659 1.9616 0.8802 35 1 0.1319 -2.7624 -1.2110 36 1 -2.0194 -7.1470 -0.3264 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000004530907.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:47:10 Heat of formation + Delta-G solvation = -58.125059 kcal Electronic energy + Delta-G solvation = -24559.287069 eV Core-core repulsion = 20854.695789 eV Total energy + Delta-G solvation = -3704.591280 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 285.120 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -42.78584 -41.20144 -38.22243 -36.18431 -35.60259 -35.04324 -32.45157 -32.28971 -30.76104 -28.90666 -27.45396 -26.16727 -23.66700 -22.52866 -21.32087 -20.70610 -19.35583 -18.10262 -17.81984 -17.19034 -17.04817 -16.95725 -15.96720 -15.64440 -15.14925 -14.90803 -14.63793 -14.45047 -14.30774 -13.49394 -13.26297 -12.87229 -12.67420 -12.59971 -12.33148 -12.23662 -12.12385 -11.83388 -11.60392 -11.36965 -11.13974 -10.70149 -10.61892 -10.37477 -9.98487 -9.76990 -9.62098 -9.10961 -8.99987 -8.65909 -8.35796 -6.15385 -4.26682 1.22734 2.37599 2.86724 3.19097 3.33728 3.43972 3.67571 3.82769 4.11372 4.17396 4.40349 4.47953 4.68633 4.84233 4.89339 5.07908 5.15052 5.18726 5.22985 5.40775 5.52419 5.62270 5.66105 5.69335 5.73851 5.84386 5.91476 6.04099 6.11568 6.36155 6.74532 6.98978 7.28817 7.47578 8.26423 8.74542 8.95759 9.46360 9.53198 10.95108 Molecular weight = 285.12amu Principal moments of inertia in cm(-1) A = 0.014585 B = 0.008260 C = 0.006191 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1919.259042 B = 3388.913031 C = 4521.831469 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.253 3.747 3 C -0.170 4.170 4 O -0.360 6.360 5 C 0.204 3.796 6 H 0.140 0.860 7 O -0.338 6.338 8 C 0.060 3.940 9 H 0.074 0.926 10 C 0.197 3.803 11 H 0.061 0.939 12 O -0.572 6.572 13 C -0.554 4.554 14 H 0.080 0.920 15 C 0.086 3.914 16 N -0.887 5.887 17 Si 0.863 3.137 18 H -0.287 1.287 19 H -0.293 1.293 20 H -0.217 1.217 21 C 0.064 3.936 22 H 0.120 0.880 23 N -0.377 5.377 24 N 0.282 4.718 25 N -0.167 5.167 26 C 0.047 3.953 27 H 0.122 0.878 28 O -0.346 6.346 29 H 0.075 0.925 30 H 0.073 0.927 31 H 0.079 0.921 32 H 0.062 0.938 33 H 0.076 0.924 34 H 0.074 0.926 35 H 0.364 0.636 36 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.306 14.208 -1.624 17.062 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.177 3.823 3 C -0.227 4.227 4 O -0.281 6.281 5 C 0.108 3.892 6 H 0.157 0.843 7 O -0.258 6.258 8 C 0.000 4.000 9 H 0.091 0.909 10 C 0.139 3.861 11 H 0.079 0.921 12 O -0.379 6.379 13 C -0.591 4.591 14 H 0.098 0.902 15 C -0.119 4.119 16 N -0.524 5.524 17 Si 0.689 3.311 18 H -0.213 1.213 19 H -0.219 1.219 20 H -0.140 1.140 21 C -0.045 4.045 22 H 0.138 0.862 23 N -0.293 5.293 24 N 0.284 4.716 25 N -0.159 5.159 26 C -0.013 4.013 27 H 0.140 0.860 28 O -0.266 6.266 29 H 0.094 0.906 30 H 0.092 0.908 31 H 0.098 0.902 32 H 0.081 0.919 33 H 0.095 0.905 34 H 0.093 0.907 35 H 0.213 0.787 36 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 9.539 13.597 -2.149 16.748 hybrid contribution -0.686 0.047 -0.407 0.799 sum 8.853 13.645 -2.556 16.465 Atomic orbital electron populations 1.22105 0.91741 1.04759 1.02720 1.23461 0.94615 0.89888 0.74359 1.22391 1.02050 0.94902 1.03376 1.88847 1.68320 1.40946 1.30012 1.25665 0.89092 0.80805 0.93624 0.84306 1.88968 1.51974 1.34663 1.50182 1.24033 0.97711 0.92144 0.86116 0.90861 1.19967 0.87261 0.86489 0.92373 0.92115 1.86615 1.66279 1.46223 1.38787 1.21283 1.12743 1.27959 0.97147 0.90240 1.24955 0.95344 0.93345 0.98263 1.69939 1.17930 1.28902 1.35618 0.87140 0.77410 0.80944 0.85560 1.21324 1.21914 1.13988 1.23542 0.81872 0.95142 1.03928 0.86219 1.70649 1.19857 1.06677 1.32112 1.41271 1.17846 1.03927 1.08549 1.87679 0.99877 1.01225 1.27125 1.24630 0.91058 0.91959 0.93628 0.86037 1.89210 1.39938 1.65907 1.31545 0.90646 0.90800 0.90169 0.91901 0.90478 0.90662 0.78747 0.92495 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.04 9.24 37.16 0.34 -1.70 16 2 C 0.25 3.42 1.48 -26.73 -0.04 3.38 16 3 C -0.17 -1.72 9.19 37.16 0.34 -1.38 16 4 O -0.36 -5.50 10.70 -67.49 -0.72 -6.22 16 5 C 0.20 3.08 5.31 38.77 0.21 3.29 16 6 H 0.14 1.72 8.14 -51.93 -0.42 1.30 16 7 O -0.34 -6.63 10.05 -65.48 -0.66 -7.29 16 8 C 0.06 1.14 2.94 -26.24 -0.08 1.07 16 9 H 0.07 1.41 7.85 -51.93 -0.41 1.00 16 10 C 0.20 4.48 2.13 -27.88 -0.06 4.42 16 11 H 0.06 1.40 7.57 -51.93 -0.39 1.01 16 12 O -0.57 -12.69 9.24 -41.14 -0.38 -13.07 16 13 C -0.55 -15.29 8.98 -34.44 -0.31 -15.60 16 14 H 0.08 2.43 7.87 -52.48 -0.41 2.01 16 15 C 0.09 2.46 5.47 -17.82 -0.10 2.36 16 16 N -0.89 -27.03 13.96 55.43 0.77 -26.26 16 17 Si 0.86 21.50 26.99 -169.99 -4.59 16.92 16 18 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 19 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16 20 H -0.22 -5.24 5.30 56.52 0.30 -4.94 16 21 C 0.06 1.00 3.01 -66.76 -0.20 0.79 16 22 H 0.12 2.00 7.13 -51.93 -0.37 1.63 16 23 N -0.38 -5.32 10.97 -3.90 -0.04 -5.36 16 24 N 0.28 4.10 10.05 60.35 0.61 4.71 16 25 N -0.17 -2.45 20.57 60.35 1.24 -1.21 16 26 C 0.05 0.64 4.42 -24.44 -0.11 0.53 16 27 H 0.12 1.34 8.13 -51.93 -0.42 0.92 16 28 O -0.35 -5.15 10.53 -63.10 -0.66 -5.81 16 29 H 0.07 0.87 8.14 -51.93 -0.42 0.44 16 30 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 31 H 0.08 1.25 7.33 -51.93 -0.38 0.87 16 32 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 34 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 35 H 0.36 7.84 7.86 45.56 0.36 8.20 16 36 H 0.27 7.61 8.31 -40.82 -0.34 7.27 16 LS Contribution 305.65 15.07 4.61 4.61 Total: -1.00 -31.05 305.65 -3.63 -34.68 By element: Atomic # 1 Polarization: 10.96 SS G_CDS: -3.80 Total: 7.15 kcal Atomic # 6 Polarization: -2.84 SS G_CDS: 0.00 Total: -2.84 kcal Atomic # 7 Polarization: -30.70 SS G_CDS: 2.58 Total: -28.12 kcal Atomic # 8 Polarization: -29.97 SS G_CDS: -2.42 Total: -32.40 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -4.59 Total: 16.92 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -31.05 -3.63 -34.68 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000004530907.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.449 kcal (2) G-P(sol) polarization free energy of solvation -31.045 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.494 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.631 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.676 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.125 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds