Wall clock time and date at job start Wed Apr 15 2020 11:47:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53002 * 109.61627 * 2 1 4 4 O 1.43233 * 109.62510 * 120.37176 * 2 1 3 5 5 C 1.43976 * 107.71152 * 121.33262 * 4 2 1 6 6 H 1.09005 * 113.77880 * 142.98329 * 5 4 2 7 7 O 1.44002 * 108.59100 * 269.93337 * 5 4 2 8 8 C 1.43462 * 107.87415 * 146.44285 * 7 5 4 9 9 H 1.08996 * 109.86629 * 93.73477 * 8 7 5 10 10 C 1.53001 * 109.86249 * 214.82480 * 8 7 5 11 11 H 1.08993 * 109.47436 * 182.93649 * 10 8 7 12 12 O 1.42902 * 109.47176 * 62.93650 * 10 8 7 13 13 C 1.50702 * 109.47095 * 302.94248 * 10 8 7 14 14 H 1.08005 * 119.99775 * 359.97438 * 13 10 8 15 15 C 1.37872 * 119.99939 * 179.97438 * 13 10 8 16 16 N 1.31515 * 119.99822 * 179.97438 * 15 13 10 17 17 Si 1.86791 * 120.00342 * 359.97438 * 15 13 10 18 18 H 1.48498 * 109.47082 * 90.00079 * 17 15 13 19 19 H 1.48501 * 109.47605 * 210.00149 * 17 15 13 20 20 H 1.48507 * 109.47250 * 330.00184 * 17 15 13 21 21 C 1.53934 * 107.40047 * 334.27703 * 8 7 5 22 22 H 1.09002 * 110.39106 * 244.53517 * 21 8 7 23 23 N 1.46500 * 110.48317 * 122.20150 * 21 8 7 24 24 N 1.12397 * 120.00222 * 68.05904 * 23 21 8 25 25 N 6.78946 * 122.16667 * 208.31835 * 2 1 3 26 26 C 1.54296 * 104.71490 * 3.34485 * 21 8 7 27 27 H 1.08999 * 113.62681 * 141.46138 * 26 21 8 28 28 O 1.43633 * 109.62224 * 239.79858 * 2 1 3 29 29 H 1.09003 * 109.47073 * 301.07659 * 1 2 3 30 30 H 1.08994 * 109.47525 * 61.08467 * 1 2 3 31 31 H 1.09006 * 109.46763 * 181.08323 * 1 2 3 32 32 H 1.08998 * 109.47398 * 178.91491 * 3 2 1 33 33 H 1.09001 * 109.47458 * 298.92109 * 3 2 1 34 34 H 1.09004 * 109.46945 * 58.91810 * 3 2 1 35 35 H 0.96701 * 114.00278 * 300.00938 * 12 10 8 36 36 H 0.96994 * 120.00303 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0437 1.4412 0.0000 4 8 2.0111 -0.6821 1.1640 5 6 2.8300 -1.7803 0.7209 6 1 3.6993 -1.9632 1.3527 7 8 1.9933 -2.9412 0.5602 8 6 2.5129 -3.7104 -0.5337 9 1 3.1948 -4.4737 -0.1589 10 6 1.3629 -4.3680 -1.2993 11 1 1.7670 -4.9921 -2.0963 12 8 0.5266 -3.3563 -1.8641 13 6 0.5534 -5.2198 -0.3557 14 1 0.8316 -5.2858 0.6858 15 6 -0.5422 -5.9147 -0.8220 16 7 -1.2484 -6.6584 0.0014 17 14 -1.0238 -5.8000 -2.6231 18 1 -0.3322 -6.8675 -3.3893 19 1 -2.4933 -5.9693 -2.7544 20 1 -0.6289 -4.4719 -3.1575 21 6 3.2704 -2.7412 -1.4591 22 1 2.7806 -2.6834 -2.4312 23 7 4.6640 -3.1654 -1.6153 24 7 4.9043 -4.1124 -2.1708 25 7 5.1447 -5.0595 -2.7263 26 6 3.2008 -1.3778 -0.7401 27 1 4.1183 -0.7947 -0.8196 28 8 2.0124 -0.6806 -1.1693 29 1 -0.3633 0.5305 0.8802 30 1 -0.3634 0.4969 -0.8995 31 1 -0.3633 -1.0276 0.0194 32 1 3.1335 1.4386 0.0195 33 1 1.6976 1.9504 -0.8995 34 1 1.6659 1.9616 0.8802 35 1 0.1319 -2.7624 -1.2110 36 1 -2.0194 -7.1470 -0.3264 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000004530907.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:47:10 Heat of formation + Delta-G solvation = -85.253500 kcal Electronic energy + Delta-G solvation = -24560.463446 eV Core-core repulsion = 20854.695789 eV Total energy + Delta-G solvation = -3705.767657 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 285.120 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -43.96987 -42.37044 -39.58444 -37.49877 -37.18943 -36.20571 -34.47791 -33.51417 -32.10800 -30.50327 -28.37318 -27.76624 -25.24514 -23.67605 -22.63056 -22.16647 -20.68477 -19.43584 -19.04323 -18.92367 -18.24970 -18.19148 -17.38347 -17.01210 -16.70241 -16.37117 -16.25233 -15.60286 -15.50024 -15.03395 -14.91176 -14.39650 -14.07156 -13.89318 -13.55737 -13.40129 -13.15264 -13.11970 -13.07573 -12.67752 -12.59511 -12.48968 -12.33736 -11.65905 -11.43234 -11.26923 -10.96464 -10.87519 -10.74718 -10.36480 -10.02337 -8.38163 -6.52944 0.02590 1.18961 1.33979 1.40011 1.67700 1.74073 2.02790 2.37477 2.71305 2.90121 2.97386 3.03827 3.24480 3.41232 3.65245 3.76653 3.87938 3.96845 4.09894 4.16658 4.25068 4.33005 4.48548 4.69175 4.73113 4.83214 4.86700 4.93829 5.06697 5.20688 5.31512 5.33218 5.63606 6.04979 6.16626 6.58839 6.97280 7.24350 8.35586 8.76357 Molecular weight = 285.12amu Principal moments of inertia in cm(-1) A = 0.014585 B = 0.008260 C = 0.006191 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1919.259042 B = 3388.913031 C = 4521.831469 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.242 3.758 3 C -0.162 4.162 4 O -0.373 6.373 5 C 0.196 3.804 6 H 0.167 0.833 7 O -0.374 6.374 8 C 0.066 3.934 9 H 0.066 0.934 10 C 0.201 3.799 11 H 0.063 0.937 12 O -0.567 6.567 13 C -0.553 4.553 14 H 0.035 0.965 15 C 0.029 3.971 16 N -0.936 5.936 17 Si 0.931 3.069 18 H -0.282 1.282 19 H -0.295 1.295 20 H -0.203 1.203 21 C 0.074 3.926 22 H 0.113 0.887 23 N -0.360 5.360 24 N 0.280 4.720 25 N -0.165 5.165 26 C 0.060 3.940 27 H 0.160 0.840 28 O -0.362 6.362 29 H 0.088 0.912 30 H 0.089 0.911 31 H 0.046 0.954 32 H 0.073 0.927 33 H 0.089 0.911 34 H 0.085 0.915 35 H 0.367 0.633 36 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.680 16.427 -3.059 19.831 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.167 3.833 3 C -0.219 4.219 4 O -0.294 6.294 5 C 0.100 3.900 6 H 0.183 0.817 7 O -0.294 6.294 8 C 0.006 3.994 9 H 0.084 0.916 10 C 0.142 3.858 11 H 0.081 0.919 12 O -0.374 6.374 13 C -0.591 4.591 14 H 0.054 0.946 15 C -0.171 4.171 16 N -0.575 5.575 17 Si 0.754 3.246 18 H -0.208 1.208 19 H -0.222 1.222 20 H -0.124 1.124 21 C -0.035 4.035 22 H 0.131 0.869 23 N -0.276 5.276 24 N 0.281 4.719 25 N -0.157 5.157 26 C 0.000 4.000 27 H 0.177 0.823 28 O -0.282 6.282 29 H 0.107 0.893 30 H 0.108 0.892 31 H 0.065 0.935 32 H 0.092 0.908 33 H 0.108 0.892 34 H 0.104 0.896 35 H 0.216 0.784 36 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 10.935 15.837 -3.582 19.576 hybrid contribution -1.113 -0.647 0.148 1.296 sum 9.822 15.190 -3.434 18.412 Atomic orbital electron populations 1.22149 0.92165 1.02964 1.04205 1.23827 0.94645 0.91388 0.73468 1.22349 1.02756 0.92244 1.04541 1.88842 1.68538 1.40894 1.31148 1.26113 0.89104 0.79409 0.95327 0.81655 1.88926 1.53734 1.36427 1.50330 1.23706 0.96247 0.92988 0.86501 0.91605 1.19776 0.87886 0.86332 0.91776 0.91909 1.86553 1.66442 1.45871 1.38537 1.21523 1.13097 1.28347 0.96113 0.94624 1.25840 0.95490 0.93079 1.02644 1.70076 1.18971 1.30653 1.37824 0.86107 0.76736 0.81549 0.80190 1.20804 1.22154 1.12426 1.23326 0.82118 0.95339 1.02723 0.86892 1.70709 1.18699 1.06445 1.31767 1.41341 1.17968 1.03996 1.08551 1.87687 0.99403 1.01273 1.27359 1.24768 0.92106 0.91249 0.91828 0.82324 1.89187 1.40559 1.66228 1.32203 0.89326 0.89230 0.93485 0.90775 0.89193 0.89607 0.78420 0.92394 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.95 9.24 71.98 0.67 -3.28 16 2 C 0.24 6.02 1.48 30.60 0.05 6.07 16 3 C -0.16 -2.71 9.19 71.98 0.66 -2.05 16 4 O -0.37 -10.79 10.70 -118.14 -1.26 -12.05 16 5 C 0.20 5.58 5.31 73.03 0.39 5.96 16 6 H 0.17 3.71 8.14 -2.38 -0.02 3.69 16 7 O -0.37 -14.69 10.05 -120.05 -1.21 -15.90 16 8 C 0.07 2.48 2.94 30.91 0.09 2.57 16 9 H 0.07 2.53 7.85 -2.39 -0.02 2.51 16 10 C 0.20 9.09 2.13 29.85 0.06 9.15 16 11 H 0.06 2.84 7.57 -2.39 -0.02 2.82 16 12 O -0.57 -24.62 9.24 -143.33 -1.32 -25.95 16 13 C -0.55 -31.42 8.98 25.60 0.23 -31.19 16 14 H 0.04 2.29 7.87 -2.91 -0.02 2.26 16 15 C 0.03 1.71 5.47 84.65 0.46 2.17 16 16 N -0.94 -58.88 13.96 21.45 0.30 -58.58 16 17 Si 0.93 44.83 26.99 68.60 1.85 46.68 16 18 H -0.28 -13.29 7.11 99.48 0.71 -12.58 16 19 H -0.29 -14.23 7.11 99.48 0.71 -13.53 16 20 H -0.20 -9.17 5.30 99.48 0.53 -8.64 16 21 C 0.07 2.16 3.01 45.75 0.14 2.30 16 22 H 0.11 3.52 7.13 -2.39 -0.02 3.50 16 23 N -0.36 -9.30 10.97 -166.24 -1.82 -11.12 16 24 N 0.28 7.57 10.05 37.02 0.37 7.94 16 25 N -0.17 -4.57 20.57 37.02 0.76 -3.81 16 26 C 0.06 1.47 4.42 32.08 0.14 1.61 16 27 H 0.16 2.77 8.13 -2.39 -0.02 2.76 16 28 O -0.36 -9.88 10.53 -122.34 -1.29 -11.17 16 29 H 0.09 1.93 8.14 -2.39 -0.02 1.91 16 30 H 0.09 1.91 8.14 -2.39 -0.02 1.89 16 31 H 0.05 1.47 7.33 -2.38 -0.02 1.46 16 32 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 33 H 0.09 1.30 8.14 -2.39 -0.02 1.28 16 34 H 0.09 1.27 8.14 -2.38 -0.02 1.25 16 35 H 0.37 15.79 7.86 -74.06 -0.58 15.21 16 36 H 0.27 15.77 8.31 -92.71 -0.77 15.00 16 Total: -1.00 -68.42 305.65 -0.38 -68.80 By element: Atomic # 1 Polarization: 21.48 SS G_CDS: 0.36 Total: 21.84 kcal Atomic # 6 Polarization: -9.58 SS G_CDS: 2.89 Total: -6.69 kcal Atomic # 7 Polarization: -65.17 SS G_CDS: -0.39 Total: -65.56 kcal Atomic # 8 Polarization: -59.98 SS G_CDS: -5.08 Total: -65.06 kcal Atomic # 14 Polarization: 44.83 SS G_CDS: 1.85 Total: 46.68 kcal Total: -68.42 -0.38 -68.80 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000004530907.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.454 kcal (2) G-P(sol) polarization free energy of solvation -68.423 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.876 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.377 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.800 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.253 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds