Wall clock time and date at job start Wed Apr 15 2020 11:47:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52997 * 109.54483 * 2 1 4 4 O 1.43713 * 109.64472 * 239.62903 * 2 1 3 5 5 C 1.44585 * 105.05695 * 215.08222 * 4 2 1 6 6 H 1.09005 * 113.07397 * 157.77928 * 5 4 2 7 7 O 1.43170 * 109.75663 * 284.88763 * 5 4 2 8 8 C 1.43060 * 110.58484 * 130.08325 * 7 5 4 9 9 H 1.08994 * 109.82613 * 240.34584 * 8 7 5 10 10 C 1.52998 * 109.82352 * 119.48344 * 8 7 5 11 11 H 1.09002 * 109.47170 * 301.45963 * 10 8 7 12 12 O 1.42901 * 109.47540 * 181.45552 * 10 8 7 13 13 C 1.50700 * 109.47039 * 61.45474 * 10 8 7 14 14 H 1.08005 * 120.00185 * 0.02562 * 13 10 8 15 15 C 1.37877 * 120.00519 * 179.97438 * 13 10 8 16 16 N 1.31523 * 119.99417 * 0.02562 * 15 13 10 17 17 Si 1.86800 * 120.00302 * 180.02562 * 15 13 10 18 18 H 1.48499 * 109.47132 * 90.00127 * 17 15 13 19 19 H 1.48501 * 109.46895 * 210.00070 * 17 15 13 20 20 H 1.48492 * 109.47101 * 329.99932 * 17 15 13 21 21 C 1.53228 * 107.78394 * 359.32312 * 8 7 5 22 22 H 1.09002 * 109.74693 * 97.77247 * 21 8 7 23 23 N 1.46497 * 111.30453 * 220.80662 * 21 8 7 24 24 N 1.12397 * 120.00015 * 289.26786 * 23 21 8 25 25 N 6.15340 * 134.14673 * 107.27504 * 2 1 3 26 26 C 1.54943 * 103.26130 * 339.66044 * 21 8 7 27 27 H 1.08995 * 114.68670 * 154.86321 * 26 21 8 28 28 O 1.43382 * 109.64992 * 120.37715 * 2 1 3 29 29 H 1.09002 * 109.46895 * 299.62288 * 1 2 3 30 30 H 1.08999 * 109.47036 * 59.62485 * 1 2 3 31 31 H 1.09000 * 109.46867 * 179.63104 * 1 2 3 32 32 H 1.08992 * 109.47325 * 180.37401 * 3 2 1 33 33 H 1.09000 * 109.46722 * 300.37767 * 3 2 1 34 34 H 1.09000 * 109.46631 * 60.37091 * 3 2 1 35 35 H 0.96703 * 113.99857 * 300.00448 * 12 10 8 36 36 H 0.96998 * 119.99409 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0419 1.4418 0.0000 4 8 2.0132 -0.6843 -1.1677 5 6 3.2155 -1.3613 -0.7358 6 1 3.4810 -2.2070 -1.3703 7 8 4.2798 -0.4142 -0.5938 8 6 4.9196 -0.5634 0.6770 9 1 4.8334 0.3626 1.2453 10 6 6.3955 -0.9136 0.4768 11 1 6.4754 -1.8345 -0.1008 12 8 7.0192 -1.0941 1.7498 13 6 7.0811 0.2052 -0.2643 14 1 6.5204 1.0788 -0.5624 15 6 8.4245 0.1141 -0.5610 16 7 9.1075 -0.9495 -0.1976 17 14 9.2745 1.5012 -1.4791 18 1 9.8106 2.4846 -0.5041 19 1 10.3899 0.9484 -2.2888 20 1 8.2988 2.1732 -2.3743 21 6 4.2046 -1.6890 1.4317 22 1 4.7604 -2.6197 1.3179 23 7 4.0330 -1.3551 2.8478 24 7 4.9244 -1.3331 3.5320 25 7 5.8159 -1.3112 4.2162 26 6 2.8319 -1.7789 0.7187 27 1 2.3444 -2.7511 0.7906 28 8 2.0122 -0.6828 1.1649 29 1 -0.3633 0.5080 0.8934 30 1 -0.3633 0.5196 -0.8866 31 1 -0.3633 -1.0277 -0.0066 32 1 3.1318 1.4405 -0.0067 33 1 1.6737 1.9580 -0.8866 34 1 1.6846 1.9541 0.8933 35 1 6.9859 -0.3127 2.3185 36 1 10.0527 -1.0134 -0.4060 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000025627362.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:47:12 Heat of formation + Delta-G solvation = -61.077171 kcal Electronic energy + Delta-G solvation = -24470.627884 eV Core-core repulsion = 20765.908591 eV Total energy + Delta-G solvation = -3704.719293 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 285.120 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -42.42017 -41.18955 -37.90761 -35.92922 -35.51340 -34.89295 -32.56460 -32.25565 -30.50957 -28.54221 -27.32879 -26.08301 -23.69589 -22.37843 -21.24342 -20.93017 -18.88383 -18.16485 -17.49997 -17.22422 -16.90120 -16.60729 -15.64701 -15.48797 -15.02584 -14.81383 -14.65493 -14.17721 -14.04303 -13.52130 -13.41752 -12.82550 -12.55776 -12.40488 -12.19066 -12.07579 -11.89889 -11.73637 -11.38494 -11.30387 -10.96673 -10.90602 -10.57669 -10.27396 -10.10707 -9.84183 -9.55219 -9.03071 -8.75585 -8.62503 -8.32274 -6.11294 -4.28027 1.63448 2.75224 3.14152 3.24688 3.31751 3.36273 3.48906 3.73762 4.07826 4.17462 4.33445 4.57971 4.79862 4.93570 5.01666 5.12142 5.19595 5.27876 5.36353 5.55186 5.63804 5.69360 5.75852 5.77712 5.94676 5.98657 6.07710 6.10472 6.22669 6.45105 7.05569 7.21880 7.42126 7.75452 7.99035 8.68376 9.00624 9.45895 9.94959 10.93407 Molecular weight = 285.12amu Principal moments of inertia in cm(-1) A = 0.017393 B = 0.006942 C = 0.005496 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1609.498754 B = 4032.640722 C = 5093.161206 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.247 3.753 3 C -0.174 4.174 4 O -0.361 6.361 5 C 0.205 3.795 6 H 0.150 0.850 7 O -0.344 6.344 8 C 0.053 3.947 9 H 0.077 0.923 10 C 0.217 3.783 11 H 0.067 0.933 12 O -0.561 6.561 13 C -0.560 4.560 14 H 0.062 0.938 15 C 0.079 3.921 16 N -0.860 5.860 17 Si 0.893 3.107 18 H -0.279 1.279 19 H -0.285 1.285 20 H -0.272 1.272 21 C 0.066 3.934 22 H 0.105 0.895 23 N -0.357 5.357 24 N 0.280 4.720 25 N -0.160 5.160 26 C 0.047 3.953 27 H 0.123 0.877 28 O -0.346 6.346 29 H 0.076 0.924 30 H 0.073 0.927 31 H 0.065 0.935 32 H 0.081 0.919 33 H 0.070 0.930 34 H 0.067 0.933 35 H 0.345 0.655 36 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.317 -1.392 1.535 14.466 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.171 3.829 3 C -0.231 4.231 4 O -0.283 6.283 5 C 0.108 3.892 6 H 0.167 0.833 7 O -0.263 6.263 8 C -0.007 4.007 9 H 0.095 0.905 10 C 0.160 3.840 11 H 0.085 0.915 12 O -0.364 6.364 13 C -0.597 4.597 14 H 0.080 0.920 15 C -0.127 4.127 16 N -0.496 5.496 17 Si 0.720 3.280 18 H -0.205 1.205 19 H -0.211 1.211 20 H -0.196 1.196 21 C -0.044 4.044 22 H 0.123 0.877 23 N -0.272 5.272 24 N 0.281 4.719 25 N -0.152 5.152 26 C -0.013 4.013 27 H 0.141 0.859 28 O -0.267 6.267 29 H 0.095 0.905 30 H 0.092 0.908 31 H 0.084 0.916 32 H 0.100 0.900 33 H 0.089 0.911 34 H 0.086 0.914 35 H 0.190 0.810 36 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -14.116 -1.733 1.757 14.330 hybrid contribution 0.742 1.020 -0.721 1.452 sum -13.374 -0.713 1.036 13.433 Atomic orbital electron populations 1.22043 0.92337 1.03278 1.03073 1.23487 0.93542 0.91140 0.74769 1.22473 1.04189 0.94199 1.02288 1.89279 1.37884 1.67551 1.33564 1.25691 0.80271 0.89647 0.93588 0.83296 1.88457 1.46053 1.56391 1.35421 1.24152 0.96718 0.96784 0.83039 0.90497 1.19822 0.82776 0.98436 0.83013 0.91514 1.86665 1.81347 1.39513 1.28909 1.21425 0.94608 1.04757 1.38926 0.92018 1.25032 0.97472 0.95625 0.94573 1.70061 1.08375 1.27281 1.43846 0.86593 0.79207 0.82237 0.79953 1.20494 1.21063 1.19645 1.23647 0.96110 1.01112 0.83553 0.87731 1.70970 1.07829 1.43923 1.04505 1.41424 1.04669 1.11523 1.14250 1.87582 0.84901 1.40135 1.02566 1.25084 0.89868 0.93103 0.93269 0.85946 1.88971 1.66953 1.42250 1.28491 0.90508 0.90827 0.91594 0.90025 0.91103 0.91428 0.81025 0.92835 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.64 9.24 37.16 0.34 -1.30 16 2 C 0.25 3.50 1.43 -26.73 -0.04 3.47 16 3 C -0.17 -2.50 9.07 37.16 0.34 -2.17 16 4 O -0.36 -5.54 10.91 -67.45 -0.74 -6.27 16 5 C 0.20 3.11 5.39 38.83 0.21 3.32 16 6 H 0.15 1.86 8.14 -51.93 -0.42 1.43 16 7 O -0.34 -6.66 8.55 -62.04 -0.53 -7.19 16 8 C 0.05 1.03 2.54 -26.61 -0.07 0.96 16 9 H 0.08 1.59 7.92 -51.93 -0.41 1.18 16 10 C 0.22 5.14 2.45 -27.88 -0.07 5.07 16 11 H 0.07 1.71 8.14 -51.93 -0.42 1.28 16 12 O -0.56 -13.35 10.59 -35.23 -0.37 -13.73 16 13 C -0.56 -14.96 8.46 -34.44 -0.29 -15.25 16 14 H 0.06 1.67 7.74 -52.48 -0.41 1.27 16 15 C 0.08 2.17 5.40 -17.82 -0.10 2.08 16 16 N -0.86 -24.66 12.84 55.43 0.71 -23.95 16 17 Si 0.89 21.12 29.54 -169.99 -5.02 16.10 16 18 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 19 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 20 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 21 C 0.07 1.07 2.96 -66.79 -0.20 0.87 16 22 H 0.10 1.66 7.79 -51.93 -0.40 1.26 16 23 N -0.36 -5.90 10.56 -3.92 -0.04 -5.94 16 24 N 0.28 4.69 9.07 60.35 0.55 5.24 16 25 N -0.16 -2.71 18.89 60.35 1.14 -1.57 16 26 C 0.05 0.66 4.86 -24.04 -0.12 0.54 16 27 H 0.12 1.33 8.14 -51.93 -0.42 0.91 16 28 O -0.35 -5.28 9.84 -62.17 -0.61 -5.89 16 29 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 30 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 31 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 32 H 0.08 1.40 6.16 -51.93 -0.32 1.08 16 33 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 34 H 0.07 0.88 8.14 -51.93 -0.42 0.45 16 35 H 0.35 7.81 8.02 45.56 0.37 8.17 16 36 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 LS Contribution 304.97 15.07 4.60 4.60 Total: -1.00 -30.17 304.97 -4.00 -34.17 By element: Atomic # 1 Polarization: 10.54 SS G_CDS: -3.69 Total: 6.84 kcal Atomic # 6 Polarization: -2.42 SS G_CDS: 0.01 Total: -2.40 kcal Atomic # 7 Polarization: -28.58 SS G_CDS: 2.36 Total: -26.22 kcal Atomic # 8 Polarization: -30.83 SS G_CDS: -2.25 Total: -33.09 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -5.02 Total: 16.10 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -30.17 -4.00 -34.17 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000025627362.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.905 kcal (2) G-P(sol) polarization free energy of solvation -30.173 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.078 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.999 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.173 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.077 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds