Wall clock time and date at job start Wed Apr 15 2020 11:47:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52997 * 109.54483 * 2 1 4 4 O 1.43713 * 109.64472 * 239.62903 * 2 1 3 5 5 C 1.44585 * 105.05695 * 215.08222 * 4 2 1 6 6 H 1.09005 * 113.07397 * 157.77928 * 5 4 2 7 7 O 1.43170 * 109.75663 * 284.88763 * 5 4 2 8 8 C 1.43060 * 110.58484 * 130.08325 * 7 5 4 9 9 H 1.08994 * 109.82613 * 240.34584 * 8 7 5 10 10 C 1.52998 * 109.82352 * 119.48344 * 8 7 5 11 11 H 1.09002 * 109.47170 * 301.45963 * 10 8 7 12 12 O 1.42901 * 109.47540 * 181.45552 * 10 8 7 13 13 C 1.50700 * 109.47039 * 61.45474 * 10 8 7 14 14 H 1.08005 * 120.00185 * 0.02562 * 13 10 8 15 15 C 1.37877 * 120.00519 * 179.97438 * 13 10 8 16 16 N 1.31523 * 119.99417 * 0.02562 * 15 13 10 17 17 Si 1.86800 * 120.00302 * 180.02562 * 15 13 10 18 18 H 1.48499 * 109.47132 * 90.00127 * 17 15 13 19 19 H 1.48501 * 109.46895 * 210.00070 * 17 15 13 20 20 H 1.48492 * 109.47101 * 329.99932 * 17 15 13 21 21 C 1.53228 * 107.78394 * 359.32312 * 8 7 5 22 22 H 1.09002 * 109.74693 * 97.77247 * 21 8 7 23 23 N 1.46497 * 111.30453 * 220.80662 * 21 8 7 24 24 N 1.12397 * 120.00015 * 289.26786 * 23 21 8 25 25 N 6.15340 * 134.14673 * 107.27504 * 2 1 3 26 26 C 1.54943 * 103.26130 * 339.66044 * 21 8 7 27 27 H 1.08995 * 114.68670 * 154.86321 * 26 21 8 28 28 O 1.43382 * 109.64992 * 120.37715 * 2 1 3 29 29 H 1.09002 * 109.46895 * 299.62288 * 1 2 3 30 30 H 1.08999 * 109.47036 * 59.62485 * 1 2 3 31 31 H 1.09000 * 109.46867 * 179.63104 * 1 2 3 32 32 H 1.08992 * 109.47325 * 180.37401 * 3 2 1 33 33 H 1.09000 * 109.46722 * 300.37767 * 3 2 1 34 34 H 1.09000 * 109.46631 * 60.37091 * 3 2 1 35 35 H 0.96703 * 113.99857 * 300.00448 * 12 10 8 36 36 H 0.96998 * 119.99409 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0419 1.4418 0.0000 4 8 2.0132 -0.6843 -1.1677 5 6 3.2155 -1.3613 -0.7358 6 1 3.4810 -2.2070 -1.3703 7 8 4.2798 -0.4142 -0.5938 8 6 4.9196 -0.5634 0.6770 9 1 4.8334 0.3626 1.2453 10 6 6.3955 -0.9136 0.4768 11 1 6.4754 -1.8345 -0.1008 12 8 7.0192 -1.0941 1.7498 13 6 7.0811 0.2052 -0.2643 14 1 6.5204 1.0788 -0.5624 15 6 8.4245 0.1141 -0.5610 16 7 9.1075 -0.9495 -0.1976 17 14 9.2745 1.5012 -1.4791 18 1 9.8106 2.4846 -0.5041 19 1 10.3899 0.9484 -2.2888 20 1 8.2988 2.1732 -2.3743 21 6 4.2046 -1.6890 1.4317 22 1 4.7604 -2.6197 1.3179 23 7 4.0330 -1.3551 2.8478 24 7 4.9244 -1.3331 3.5320 25 7 5.8159 -1.3112 4.2162 26 6 2.8319 -1.7789 0.7187 27 1 2.3444 -2.7511 0.7906 28 8 2.0122 -0.6828 1.1649 29 1 -0.3633 0.5080 0.8934 30 1 -0.3633 0.5196 -0.8866 31 1 -0.3633 -1.0277 -0.0066 32 1 3.1318 1.4405 -0.0067 33 1 1.6737 1.9580 -0.8866 34 1 1.6846 1.9541 0.8933 35 1 6.9859 -0.3127 2.3185 36 1 10.0527 -1.0134 -0.4060 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000025627362.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:47:11 Heat of formation + Delta-G solvation = -86.436976 kcal Electronic energy + Delta-G solvation = -24471.727568 eV Core-core repulsion = 20765.908591 eV Total energy + Delta-G solvation = -3705.818977 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 285.120 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -43.76595 -42.41524 -39.33033 -37.34211 -37.21685 -36.08616 -34.36930 -33.65433 -31.90222 -30.14199 -28.31517 -27.72637 -25.36746 -23.59934 -22.71920 -22.24414 -20.30164 -19.50337 -18.92270 -18.69802 -18.47517 -17.92739 -17.12922 -16.86080 -16.70330 -16.35425 -16.20674 -15.58050 -15.25840 -14.94042 -14.80514 -14.33475 -13.99026 -13.56528 -13.44875 -13.32677 -13.16353 -13.08443 -12.96549 -12.85794 -12.70786 -12.41653 -12.14994 -11.90072 -11.60546 -11.21598 -10.88188 -10.79926 -10.66096 -10.29927 -9.89094 -8.20717 -6.43452 0.28827 1.35928 1.37271 1.39658 1.48378 1.97262 2.17112 2.34795 2.52594 2.89116 3.00872 3.09964 3.32967 3.45468 3.75170 3.90400 3.95954 4.02087 4.17721 4.23014 4.34003 4.40518 4.55439 4.63933 4.72813 4.79944 4.88044 4.95474 5.16830 5.31033 5.41601 5.62083 5.75343 5.97886 6.08255 6.62339 7.05956 7.35023 8.59825 8.83557 Molecular weight = 285.12amu Principal moments of inertia in cm(-1) A = 0.017393 B = 0.006942 C = 0.005496 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1609.498754 B = 4032.640722 C = 5093.161206 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.238 3.762 3 C -0.174 4.174 4 O -0.367 6.367 5 C 0.194 3.806 6 H 0.177 0.823 7 O -0.370 6.370 8 C 0.071 3.929 9 H 0.059 0.941 10 C 0.219 3.781 11 H 0.045 0.955 12 O -0.566 6.566 13 C -0.572 4.572 14 H 0.051 0.949 15 C 0.032 3.968 16 N -0.893 5.893 17 Si 0.954 3.046 18 H -0.274 1.274 19 H -0.279 1.279 20 H -0.271 1.271 21 C 0.068 3.932 22 H 0.111 0.889 23 N -0.352 5.352 24 N 0.279 4.721 25 N -0.165 5.165 26 C 0.059 3.941 27 H 0.166 0.834 28 O -0.360 6.360 29 H 0.087 0.913 30 H 0.084 0.916 31 H 0.075 0.925 32 H 0.047 0.953 33 H 0.081 0.919 34 H 0.078 0.922 35 H 0.349 0.651 36 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.923 -1.564 1.286 16.051 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.162 3.838 3 C -0.232 4.232 4 O -0.288 6.288 5 C 0.098 3.902 6 H 0.194 0.806 7 O -0.290 6.290 8 C 0.010 3.990 9 H 0.077 0.923 10 C 0.161 3.839 11 H 0.063 0.937 12 O -0.369 6.369 13 C -0.610 4.610 14 H 0.069 0.931 15 C -0.171 4.171 16 N -0.530 5.530 17 Si 0.779 3.221 18 H -0.199 1.199 19 H -0.205 1.205 20 H -0.196 1.196 21 C -0.042 4.042 22 H 0.129 0.871 23 N -0.267 5.267 24 N 0.281 4.719 25 N -0.157 5.157 26 C -0.001 4.001 27 H 0.183 0.817 28 O -0.280 6.280 29 H 0.106 0.894 30 H 0.103 0.897 31 H 0.094 0.906 32 H 0.066 0.934 33 H 0.100 0.900 34 H 0.097 0.903 35 H 0.194 0.806 36 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -15.739 -1.899 1.508 15.925 hybrid contribution 1.204 1.103 -0.658 1.761 sum -14.535 -0.796 0.849 14.582 Atomic orbital electron populations 1.22029 0.89486 1.04321 1.04193 1.23780 0.95468 0.90408 0.74139 1.22481 1.01945 0.95320 1.03419 1.89278 1.37549 1.67680 1.34294 1.26157 0.79354 0.89476 0.95192 0.80607 1.88417 1.47451 1.57998 1.35125 1.23592 0.94613 0.97080 0.83672 0.92296 1.19630 0.85430 0.96415 0.82417 0.93727 1.86613 1.81872 1.39637 1.28816 1.21720 0.95013 1.05199 1.39055 0.93120 1.25766 0.98211 0.97753 0.95363 1.70159 1.08622 1.28975 1.45263 0.85643 0.78133 0.79537 0.78815 1.19920 1.20465 1.19552 1.23647 0.97625 0.99791 0.83121 0.87091 1.71000 1.07653 1.43609 1.04462 1.41480 1.04671 1.11517 1.14248 1.87581 0.84986 1.40503 1.02675 1.25311 0.88710 0.94592 0.91446 0.81726 1.88952 1.67058 1.42815 1.29216 0.89415 0.89690 0.90611 0.93389 0.90033 0.90300 0.80620 0.92794 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.69 9.24 71.98 0.67 -2.03 16 2 C 0.24 6.27 1.43 30.59 0.04 6.31 16 3 C -0.17 -4.85 9.07 71.98 0.65 -4.20 16 4 O -0.37 -10.51 10.91 -118.18 -1.29 -11.80 16 5 C 0.19 5.58 5.39 73.06 0.39 5.97 16 6 H 0.18 3.99 8.14 -2.38 -0.02 3.97 16 7 O -0.37 -14.33 8.55 -123.35 -1.05 -15.38 16 8 C 0.07 2.76 2.54 30.67 0.08 2.84 16 9 H 0.06 2.51 7.92 -2.39 -0.02 2.49 16 10 C 0.22 10.55 2.45 29.85 0.07 10.62 16 11 H 0.05 2.34 8.14 -2.39 -0.02 2.33 16 12 O -0.57 -27.31 10.59 -148.98 -1.58 -28.89 16 13 C -0.57 -31.16 8.46 25.60 0.22 -30.95 16 14 H 0.05 2.81 7.74 -2.91 -0.02 2.79 16 15 C 0.03 1.78 5.40 84.65 0.46 2.24 16 16 N -0.89 -51.82 12.84 21.45 0.28 -51.54 16 17 Si 0.95 43.67 29.54 68.60 2.03 45.70 16 18 H -0.27 -12.22 7.11 99.48 0.71 -11.51 16 19 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 20 H -0.27 -12.24 7.11 99.48 0.71 -11.54 16 21 C 0.07 2.14 2.96 45.73 0.14 2.28 16 22 H 0.11 3.38 7.79 -2.39 -0.02 3.36 16 23 N -0.35 -11.24 10.56 -166.31 -1.76 -12.99 16 24 N 0.28 9.19 9.07 37.02 0.34 9.53 16 25 N -0.17 -5.56 18.89 37.02 0.70 -4.86 16 26 C 0.06 1.50 4.86 32.34 0.16 1.66 16 27 H 0.17 2.88 8.14 -2.39 -0.02 2.86 16 28 O -0.36 -10.19 9.84 -123.22 -1.21 -11.40 16 29 H 0.09 1.46 8.14 -2.39 -0.02 1.45 16 30 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 31 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 32 H 0.05 1.66 6.16 -2.39 -0.01 1.65 16 33 H 0.08 2.03 8.14 -2.39 -0.02 2.01 16 34 H 0.08 1.96 8.14 -2.39 -0.02 1.94 16 35 H 0.35 16.07 8.02 -74.06 -0.59 15.48 16 36 H 0.26 14.51 8.31 -92.71 -0.77 13.74 16 Total: -1.00 -64.83 304.97 -0.16 -64.99 By element: Atomic # 1 Polarization: 21.38 SS G_CDS: 0.53 Total: 21.90 kcal Atomic # 6 Polarization: -8.13 SS G_CDS: 2.87 Total: -5.26 kcal Atomic # 7 Polarization: -59.42 SS G_CDS: -0.45 Total: -59.86 kcal Atomic # 8 Polarization: -62.33 SS G_CDS: -5.14 Total: -67.47 kcal Atomic # 14 Polarization: 43.67 SS G_CDS: 2.03 Total: 45.70 kcal Total: -64.83 -0.16 -64.99 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000025627362.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.451 kcal (2) G-P(sol) polarization free energy of solvation -64.829 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.281 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.156 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.986 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.437 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds