Wall clock time and date at job start Wed Apr 15 2020 11:47:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53005 * 109.62321 * 2 1 4 4 O 1.43640 * 109.62477 * 120.37708 * 2 1 3 5 5 C 1.44652 * 105.20773 * 95.48307 * 4 2 1 6 6 H 1.08997 * 113.31703 * 158.18855 * 5 4 2 7 7 O 1.43446 * 108.39043 * 284.70491 * 5 4 2 8 8 C 1.43172 * 110.54277 * 130.51309 * 7 5 4 9 9 H 1.08993 * 109.84792 * 241.03649 * 8 7 5 10 10 C 1.52999 * 109.93347 * 120.05687 * 8 7 5 11 11 H 1.08999 * 109.47155 * 301.90881 * 10 8 7 12 12 O 1.42891 * 109.47095 * 181.90239 * 10 8 7 13 13 C 1.50706 * 109.46744 * 61.90534 * 10 8 7 14 14 H 1.07996 * 120.00279 * 0.02562 * 13 10 8 15 15 C 1.37877 * 119.99559 * 179.97438 * 13 10 8 16 16 N 1.31512 * 120.00357 * 359.97438 * 15 13 10 17 17 Si 1.86797 * 119.99730 * 179.97438 * 15 13 10 18 18 H 1.48501 * 109.47214 * 90.00052 * 17 15 13 19 19 H 1.48500 * 109.47562 * 210.00037 * 17 15 13 20 20 H 1.48499 * 109.47266 * 330.00419 * 17 15 13 21 21 C 1.54289 * 107.49955 * 0.52138 * 8 7 5 22 22 H 1.08999 * 110.78122 * 219.20087 * 21 8 7 23 23 N 1.46507 * 110.77981 * 95.95339 * 21 8 7 24 24 N 1.12402 * 119.99572 * 66.45235 * 23 21 8 25 25 N 6.69618 * 100.14706 * 198.46035 * 2 1 3 26 26 C 1.54894 * 102.62180 * 337.67378 * 21 8 7 27 27 H 1.08996 * 113.70996 * 156.04506 * 26 21 8 28 28 O 1.43284 * 109.62919 * 239.77211 * 2 1 3 29 29 H 1.08998 * 109.47240 * 301.06977 * 1 2 3 30 30 H 1.09003 * 109.46771 * 61.07652 * 1 2 3 31 31 H 1.09003 * 109.46715 * 181.07097 * 1 2 3 32 32 H 1.08993 * 109.46738 * 178.92493 * 3 2 1 33 33 H 1.09003 * 109.47006 * 298.92725 * 3 2 1 34 34 H 1.09000 * 109.47188 * 58.92261 * 3 2 1 35 35 H 0.96704 * 114.00335 * 300.00043 * 12 10 8 36 36 H 0.97002 * 120.00093 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0439 1.4412 0.0000 4 8 2.0125 -0.6842 1.1672 5 6 2.2656 -2.0410 0.7343 6 1 2.9690 -2.5739 1.3740 7 8 1.0064 -2.7142 0.5959 8 6 0.9265 -3.3746 -0.6719 9 1 0.0955 -2.9689 -1.2488 10 6 0.7305 -4.8779 -0.4655 11 1 1.5560 -5.2742 0.1257 12 8 0.6964 -5.5325 -1.7352 13 6 -0.5683 -5.1201 0.2596 14 1 -1.1917 -4.2855 0.5443 15 6 -0.9611 -6.4075 0.5586 16 7 -0.2027 -7.4240 0.2106 17 14 -2.5705 -6.7078 1.4579 18 1 -3.6675 -6.8676 0.4698 19 1 -2.4577 -7.9419 2.2761 20 1 -2.8661 -5.5525 2.3429 21 6 2.2544 -3.1166 -1.4140 22 1 2.0769 -2.9427 -2.4752 23 7 3.1834 -4.2329 -1.2205 24 7 2.9465 -5.2426 -1.6539 25 7 2.7098 -6.2523 -2.0872 26 6 2.7843 -1.8350 -0.7240 27 1 3.8648 -1.7126 -0.7973 28 8 2.0114 -0.6794 -1.1661 29 1 -0.3633 0.5303 0.8802 30 1 -0.3633 0.4970 -0.8995 31 1 -0.3633 -1.0275 0.0192 32 1 3.1337 1.4383 0.0193 33 1 1.6977 1.9503 -0.8995 34 1 1.6663 1.9616 0.8802 35 1 -0.0152 -5.2290 -2.3153 36 1 -0.4790 -8.3297 0.4212 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000025627371.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:47:13 Heat of formation + Delta-G solvation = -30.782048 kcal Electronic energy + Delta-G solvation = -24668.612177 eV Core-core repulsion = 20965.206579 eV Total energy + Delta-G solvation = -3703.405598 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 285.120 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -42.18810 -40.93921 -37.71562 -35.53915 -35.43753 -34.79622 -32.50798 -32.23329 -30.30502 -28.53526 -27.34649 -25.96552 -23.49626 -22.38209 -21.16659 -21.03010 -18.83994 -17.93875 -17.23267 -16.94383 -16.66573 -16.33463 -15.81335 -15.02206 -14.93310 -14.66522 -14.48492 -14.32355 -13.91826 -13.38740 -13.31569 -12.79451 -12.53044 -12.32831 -12.26440 -12.06262 -11.89420 -11.77880 -11.37122 -11.21599 -10.95579 -10.85421 -10.62146 -10.26222 -10.05004 -9.70280 -9.32052 -9.01924 -8.67281 -8.35829 -8.12885 -6.07115 -4.23960 2.04750 3.12697 3.24976 3.25544 3.33051 3.37597 3.68199 4.08236 4.18627 4.30152 4.35757 4.72421 4.87291 4.98593 5.01386 5.20689 5.28253 5.44690 5.45655 5.55932 5.67173 5.69877 5.76466 5.84278 5.94148 6.01531 6.07052 6.16017 6.41540 6.47360 7.06768 7.24810 7.46667 7.77972 8.02134 8.69487 8.99402 9.48816 10.42656 10.96825 Molecular weight = 285.12amu Principal moments of inertia in cm(-1) A = 0.018747 B = 0.007071 C = 0.005536 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1493.198392 B = 3959.047230 C = 5056.932800 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.254 3.746 3 C -0.151 4.151 4 O -0.364 6.364 5 C 0.208 3.792 6 H 0.150 0.850 7 O -0.349 6.349 8 C 0.050 3.950 9 H 0.082 0.918 10 C 0.205 3.795 11 H 0.067 0.933 12 O -0.567 6.567 13 C -0.557 4.557 14 H 0.060 0.940 15 C 0.080 3.920 16 N -0.853 5.853 17 Si 0.892 3.108 18 H -0.280 1.280 19 H -0.285 1.285 20 H -0.273 1.273 21 C 0.069 3.931 22 H 0.095 0.905 23 N -0.407 5.407 24 N 0.281 4.719 25 N -0.082 5.082 26 C 0.050 3.950 27 H 0.129 0.871 28 O -0.372 6.372 29 H 0.071 0.929 30 H 0.066 0.934 31 H 0.083 0.917 32 H 0.066 0.934 33 H 0.075 0.925 34 H 0.074 0.926 35 H 0.349 0.651 36 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.564 12.887 -3.039 14.362 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.178 3.822 3 C -0.209 4.209 4 O -0.286 6.286 5 C 0.113 3.887 6 H 0.167 0.833 7 O -0.270 6.270 8 C -0.010 4.010 9 H 0.099 0.901 10 C 0.147 3.853 11 H 0.084 0.916 12 O -0.370 6.370 13 C -0.595 4.595 14 H 0.078 0.922 15 C -0.127 4.127 16 N -0.488 5.488 17 Si 0.719 3.281 18 H -0.206 1.206 19 H -0.211 1.211 20 H -0.198 1.198 21 C -0.042 4.042 22 H 0.113 0.887 23 N -0.322 5.322 24 N 0.283 4.717 25 N -0.076 5.076 26 C -0.009 4.009 27 H 0.146 0.854 28 O -0.292 6.292 29 H 0.090 0.910 30 H 0.085 0.915 31 H 0.102 0.898 32 H 0.085 0.915 33 H 0.094 0.906 34 H 0.093 0.907 35 H 0.195 0.805 36 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 6.267 12.032 -2.596 13.812 hybrid contribution -1.918 0.305 0.052 1.943 sum 4.349 12.336 -2.544 13.326 Atomic orbital electron populations 1.22506 0.93466 1.05041 1.02292 1.23355 0.93432 0.90802 0.74649 1.22061 1.02249 0.93474 1.03068 1.89258 1.84994 1.21267 1.33079 1.25793 0.87552 0.81238 0.94162 0.83273 1.88489 1.34413 1.67824 1.36227 1.24229 0.94784 0.98571 0.83377 0.90063 1.19904 0.99444 0.82649 0.83268 0.91585 1.86718 1.54179 1.67606 1.28519 1.21310 1.05743 0.92668 1.39751 0.92151 1.25025 0.96943 0.96175 0.94569 1.70066 1.36520 0.98637 1.43577 0.86621 0.83797 0.77807 0.79889 1.20600 1.21105 1.19769 1.23418 0.91004 0.88485 1.01287 0.88715 1.70755 1.29815 0.92653 1.38970 1.40923 1.15669 1.05885 1.09225 1.87453 0.97727 0.97595 1.24783 1.25015 0.97617 0.84537 0.93737 0.85352 1.89049 1.70045 1.40186 1.29944 0.90990 0.91531 0.89829 0.91526 0.90608 0.90703 0.80529 0.92856 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.49 9.07 37.16 0.34 -2.15 16 2 C 0.25 3.64 1.42 -26.73 -0.04 3.60 16 3 C -0.15 -1.65 9.24 37.16 0.34 -1.31 16 4 O -0.36 -5.89 10.88 -67.50 -0.73 -6.62 16 5 C 0.21 3.46 5.40 38.84 0.21 3.67 16 6 H 0.15 2.26 8.14 -51.93 -0.42 1.84 16 7 O -0.35 -7.08 8.49 -62.40 -0.53 -7.61 16 8 C 0.05 0.99 2.84 -26.06 -0.07 0.91 16 9 H 0.08 1.59 8.04 -51.93 -0.42 1.17 16 10 C 0.20 4.86 1.78 -27.88 -0.05 4.81 16 11 H 0.07 1.77 6.91 -51.93 -0.36 1.41 16 12 O -0.57 -12.88 7.96 -35.23 -0.28 -13.16 16 13 C -0.56 -14.96 8.47 -34.44 -0.29 -15.26 16 14 H 0.06 1.65 7.74 -52.49 -0.41 1.24 16 15 C 0.08 2.19 5.40 -17.82 -0.10 2.09 16 16 N -0.85 -24.41 12.84 55.43 0.71 -23.70 16 17 Si 0.89 21.25 29.54 -169.99 -5.02 16.23 16 18 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 19 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 20 H -0.27 -6.52 7.11 56.52 0.40 -6.11 16 21 C 0.07 1.14 3.42 -66.25 -0.23 0.92 16 22 H 0.10 1.47 8.14 -51.93 -0.42 1.05 16 23 N -0.41 -7.22 10.53 -3.46 -0.04 -7.26 16 24 N 0.28 5.39 7.31 60.35 0.44 5.83 16 25 N -0.08 -1.66 17.57 60.35 1.06 -0.60 16 26 C 0.05 0.74 4.77 -24.05 -0.11 0.62 16 27 H 0.13 1.60 8.14 -51.93 -0.42 1.17 16 28 O -0.37 -5.60 10.40 -62.42 -0.65 -6.24 16 29 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 30 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 31 H 0.08 1.42 6.11 -51.93 -0.32 1.10 16 32 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 33 H 0.08 0.73 8.14 -51.93 -0.42 0.30 16 34 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 35 H 0.35 7.20 9.04 45.56 0.41 7.62 16 36 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 LS Contribution 299.95 15.07 4.52 4.52 Total: -1.00 -30.01 299.95 -4.12 -34.14 By element: Atomic # 1 Polarization: 10.19 SS G_CDS: -3.61 Total: 6.58 kcal Atomic # 6 Polarization: -2.10 SS G_CDS: 0.00 Total: -2.10 kcal Atomic # 7 Polarization: -27.91 SS G_CDS: 2.18 Total: -25.73 kcal Atomic # 8 Polarization: -31.45 SS G_CDS: -2.19 Total: -33.64 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -5.02 Total: 16.23 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -30.01 -4.12 -34.14 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000025627371.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.355 kcal (2) G-P(sol) polarization free energy of solvation -30.014 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.658 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.124 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.137 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.782 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds