Wall clock time and date at job start Wed Apr 15 2020 11:47:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53005 * 109.62321 * 2 1 4 4 O 1.43640 * 109.62477 * 120.37708 * 2 1 3 5 5 C 1.44652 * 105.20773 * 95.48307 * 4 2 1 6 6 H 1.08997 * 113.31703 * 158.18855 * 5 4 2 7 7 O 1.43446 * 108.39043 * 284.70491 * 5 4 2 8 8 C 1.43172 * 110.54277 * 130.51309 * 7 5 4 9 9 H 1.08993 * 109.84792 * 241.03649 * 8 7 5 10 10 C 1.52999 * 109.93347 * 120.05687 * 8 7 5 11 11 H 1.08999 * 109.47155 * 301.90881 * 10 8 7 12 12 O 1.42891 * 109.47095 * 181.90239 * 10 8 7 13 13 C 1.50706 * 109.46744 * 61.90534 * 10 8 7 14 14 H 1.07996 * 120.00279 * 0.02562 * 13 10 8 15 15 C 1.37877 * 119.99559 * 179.97438 * 13 10 8 16 16 N 1.31512 * 120.00357 * 359.97438 * 15 13 10 17 17 Si 1.86797 * 119.99730 * 179.97438 * 15 13 10 18 18 H 1.48501 * 109.47214 * 90.00052 * 17 15 13 19 19 H 1.48500 * 109.47562 * 210.00037 * 17 15 13 20 20 H 1.48499 * 109.47266 * 330.00419 * 17 15 13 21 21 C 1.54289 * 107.49955 * 0.52138 * 8 7 5 22 22 H 1.08999 * 110.78122 * 219.20087 * 21 8 7 23 23 N 1.46507 * 110.77981 * 95.95339 * 21 8 7 24 24 N 1.12402 * 119.99572 * 66.45235 * 23 21 8 25 25 N 6.69618 * 100.14706 * 198.46035 * 2 1 3 26 26 C 1.54894 * 102.62180 * 337.67378 * 21 8 7 27 27 H 1.08996 * 113.70996 * 156.04506 * 26 21 8 28 28 O 1.43284 * 109.62919 * 239.77211 * 2 1 3 29 29 H 1.08998 * 109.47240 * 301.06977 * 1 2 3 30 30 H 1.09003 * 109.46771 * 61.07652 * 1 2 3 31 31 H 1.09003 * 109.46715 * 181.07097 * 1 2 3 32 32 H 1.08993 * 109.46738 * 178.92493 * 3 2 1 33 33 H 1.09003 * 109.47006 * 298.92725 * 3 2 1 34 34 H 1.09000 * 109.47188 * 58.92261 * 3 2 1 35 35 H 0.96704 * 114.00335 * 300.00043 * 12 10 8 36 36 H 0.97002 * 120.00093 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0439 1.4412 0.0000 4 8 2.0125 -0.6842 1.1672 5 6 2.2656 -2.0410 0.7343 6 1 2.9690 -2.5739 1.3740 7 8 1.0064 -2.7142 0.5959 8 6 0.9265 -3.3746 -0.6719 9 1 0.0955 -2.9689 -1.2488 10 6 0.7305 -4.8779 -0.4655 11 1 1.5560 -5.2742 0.1257 12 8 0.6964 -5.5325 -1.7352 13 6 -0.5683 -5.1201 0.2596 14 1 -1.1917 -4.2855 0.5443 15 6 -0.9611 -6.4075 0.5586 16 7 -0.2027 -7.4240 0.2106 17 14 -2.5705 -6.7078 1.4579 18 1 -3.6675 -6.8676 0.4698 19 1 -2.4577 -7.9419 2.2761 20 1 -2.8661 -5.5525 2.3429 21 6 2.2544 -3.1166 -1.4140 22 1 2.0769 -2.9427 -2.4752 23 7 3.1834 -4.2329 -1.2205 24 7 2.9465 -5.2426 -1.6539 25 7 2.7098 -6.2523 -2.0872 26 6 2.7843 -1.8350 -0.7240 27 1 3.8648 -1.7126 -0.7973 28 8 2.0114 -0.6794 -1.1661 29 1 -0.3633 0.5303 0.8802 30 1 -0.3633 0.4970 -0.8995 31 1 -0.3633 -1.0275 0.0192 32 1 3.1337 1.4383 0.0193 33 1 1.6977 1.9503 -0.8995 34 1 1.6663 1.9616 0.8802 35 1 -0.0152 -5.2290 -2.3153 36 1 -0.4790 -8.3297 0.4212 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000025627371.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:47:13 Heat of formation + Delta-G solvation = -55.667173 kcal Electronic energy + Delta-G solvation = -24669.691277 eV Core-core repulsion = 20965.206579 eV Total energy + Delta-G solvation = -3704.484698 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 285.120 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -43.68308 -42.22764 -39.17206 -37.29565 -36.87396 -36.07468 -34.34067 -33.61968 -31.73313 -30.16694 -28.32047 -27.65914 -25.20874 -23.72183 -22.68172 -22.27140 -20.33048 -19.61916 -18.71152 -18.22133 -18.18525 -17.98626 -17.29339 -16.69586 -16.49953 -16.16882 -16.07842 -15.62937 -15.18966 -15.02273 -14.73683 -14.14896 -13.95203 -13.55387 -13.50398 -13.40508 -13.18320 -13.07733 -12.87385 -12.80908 -12.76726 -12.41972 -12.16658 -11.95613 -11.60183 -10.98880 -10.86093 -10.77106 -10.64062 -10.16676 -9.63671 -8.16451 -6.39176 0.56993 1.35260 1.37717 1.47575 1.71674 1.90101 2.31978 2.38331 2.78026 2.87004 3.02111 3.13819 3.40654 3.52485 3.87582 3.94652 3.97253 4.03263 4.15114 4.26602 4.38723 4.46885 4.59238 4.65111 4.72221 4.80198 4.94384 4.99956 5.16844 5.31670 5.43201 5.63907 5.78662 5.99014 6.06143 6.65579 7.13184 7.38386 8.86582 8.91469 Molecular weight = 285.12amu Principal moments of inertia in cm(-1) A = 0.018747 B = 0.007071 C = 0.005536 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1493.198392 B = 3959.047230 C = 5056.932800 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.243 3.757 3 C -0.145 4.145 4 O -0.372 6.372 5 C 0.197 3.803 6 H 0.160 0.840 7 O -0.376 6.376 8 C 0.059 3.941 9 H 0.081 0.919 10 C 0.214 3.786 11 H 0.033 0.967 12 O -0.567 6.567 13 C -0.571 4.571 14 H 0.049 0.951 15 C 0.034 3.966 16 N -0.884 5.884 17 Si 0.951 3.049 18 H -0.272 1.272 19 H -0.283 1.283 20 H -0.275 1.275 21 C 0.073 3.927 22 H 0.113 0.887 23 N -0.396 5.396 24 N 0.284 4.716 25 N -0.110 5.110 26 C 0.065 3.935 27 H 0.161 0.839 28 O -0.376 6.376 29 H 0.080 0.920 30 H 0.084 0.916 31 H 0.050 0.950 32 H 0.073 0.927 33 H 0.091 0.909 34 H 0.085 0.915 35 H 0.357 0.643 36 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.815 14.800 -3.328 16.245 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.167 3.833 3 C -0.202 4.202 4 O -0.294 6.294 5 C 0.102 3.898 6 H 0.177 0.823 7 O -0.297 6.297 8 C 0.000 4.000 9 H 0.099 0.901 10 C 0.156 3.844 11 H 0.050 0.950 12 O -0.371 6.371 13 C -0.609 4.609 14 H 0.067 0.933 15 C -0.170 4.170 16 N -0.520 5.520 17 Si 0.777 3.223 18 H -0.197 1.197 19 H -0.208 1.208 20 H -0.199 1.199 21 C -0.037 4.037 22 H 0.131 0.869 23 N -0.311 5.311 24 N 0.286 4.714 25 N -0.103 5.103 26 C 0.007 3.993 27 H 0.179 0.821 28 O -0.296 6.296 29 H 0.099 0.901 30 H 0.103 0.897 31 H 0.069 0.931 32 H 0.092 0.908 33 H 0.110 0.890 34 H 0.104 0.896 35 H 0.204 0.796 36 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 6.514 13.962 -2.889 15.676 hybrid contribution -1.997 -0.194 0.188 2.015 sum 4.517 13.768 -2.701 14.740 Atomic orbital electron populations 1.22513 0.93815 1.03276 1.03690 1.23733 0.93472 0.92268 0.73826 1.22063 1.02731 0.90982 1.04440 1.89253 1.85065 1.20843 1.34202 1.26061 0.86524 0.81448 0.95793 0.82345 1.88458 1.36552 1.68255 1.36415 1.23891 0.96587 0.95709 0.83856 0.90135 1.19579 0.96711 0.85162 0.82987 0.94974 1.86693 1.54432 1.67955 1.28038 1.21612 1.06899 0.92379 1.39972 0.93276 1.25727 0.99878 0.96079 0.95322 1.70175 1.38062 0.98839 1.44921 0.85685 0.80396 0.77412 0.78815 1.19714 1.20815 1.19946 1.23478 0.89324 0.88790 1.02113 0.86886 1.70701 1.29860 0.92570 1.37933 1.40969 1.15298 1.05980 1.09189 1.87468 0.98520 0.98252 1.26089 1.25094 0.99001 0.83597 0.91648 0.82148 1.89039 1.70271 1.39969 1.30364 0.90071 0.89744 0.93052 0.90780 0.88983 0.89609 0.79604 0.92952 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -4.69 9.07 71.98 0.65 -4.04 16 2 C 0.24 6.38 1.42 30.60 0.04 6.43 16 3 C -0.15 -2.68 9.24 71.98 0.66 -2.02 16 4 O -0.37 -11.36 10.88 -118.13 -1.29 -12.65 16 5 C 0.20 6.28 5.40 73.07 0.39 6.68 16 6 H 0.16 4.63 8.14 -2.39 -0.02 4.61 16 7 O -0.38 -15.20 8.49 -123.00 -1.04 -16.24 16 8 C 0.06 2.32 2.84 31.03 0.09 2.41 16 9 H 0.08 3.14 8.04 -2.39 -0.02 3.12 16 10 C 0.21 10.24 1.78 29.85 0.05 10.29 16 11 H 0.03 1.77 6.91 -2.39 -0.02 1.76 16 12 O -0.57 -25.98 7.96 -148.98 -1.19 -27.16 16 13 C -0.57 -31.11 8.47 25.60 0.22 -30.89 16 14 H 0.05 2.73 7.74 -2.91 -0.02 2.71 16 15 C 0.03 1.87 5.40 84.66 0.46 2.33 16 16 N -0.88 -51.28 12.84 21.45 0.28 -51.00 16 17 Si 0.95 43.99 29.54 68.60 2.03 46.01 16 18 H -0.27 -12.12 7.11 99.48 0.71 -11.42 16 19 H -0.28 -12.85 7.11 99.48 0.71 -12.15 16 20 H -0.27 -12.64 7.11 99.48 0.71 -11.93 16 21 C 0.07 2.31 3.42 46.07 0.16 2.47 16 22 H 0.11 3.24 8.14 -2.39 -0.02 3.22 16 23 N -0.40 -13.59 10.53 -164.88 -1.74 -15.32 16 24 N 0.28 10.79 7.31 37.02 0.27 11.06 16 25 N -0.11 -4.49 17.57 37.02 0.65 -3.84 16 26 C 0.07 1.77 4.77 32.33 0.15 1.92 16 27 H 0.16 3.37 8.14 -2.39 -0.02 3.36 16 28 O -0.38 -10.28 10.40 -122.98 -1.28 -11.56 16 29 H 0.08 1.97 8.14 -2.39 -0.02 1.95 16 30 H 0.08 1.90 8.14 -2.39 -0.02 1.88 16 31 H 0.05 1.71 6.11 -2.39 -0.01 1.70 16 32 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 33 H 0.09 1.42 8.14 -2.39 -0.02 1.40 16 34 H 0.09 1.41 8.14 -2.39 -0.02 1.39 16 35 H 0.36 14.81 9.04 -74.05 -0.67 14.14 16 36 H 0.26 14.53 8.31 -92.71 -0.77 13.76 16 Total: -1.00 -64.42 299.95 0.03 -64.39 By element: Atomic # 1 Polarization: 20.30 SS G_CDS: 0.45 Total: 20.75 kcal Atomic # 6 Polarization: -7.32 SS G_CDS: 2.88 Total: -4.43 kcal Atomic # 7 Polarization: -58.56 SS G_CDS: -0.54 Total: -59.10 kcal Atomic # 8 Polarization: -62.82 SS G_CDS: -4.80 Total: -67.61 kcal Atomic # 14 Polarization: 43.99 SS G_CDS: 2.03 Total: 46.01 kcal Total: -64.42 0.03 -64.39 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000025627371.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.722 kcal (2) G-P(sol) polarization free energy of solvation -64.416 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.694 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.027 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.389 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.667 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds