Wall clock time and date at job start Wed Apr 15 2020 11:47:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46494 * 109.46923 * 2 1 4 4 C 1.46500 * 120.00469 * 270.00196 * 3 2 1 5 5 C 1.50700 * 109.47061 * 270.00279 * 4 3 2 6 6 H 1.07994 * 119.99989 * 359.97438 * 5 4 3 7 7 C 1.37875 * 120.00097 * 179.97438 * 5 4 3 8 8 N 1.31520 * 120.00009 * 359.97438 * 7 5 4 9 9 Si 1.86801 * 120.00189 * 179.97438 * 7 5 4 10 10 H 1.48500 * 109.47005 * 60.00103 * 9 7 5 11 11 H 1.48499 * 109.47113 * 179.97438 * 9 7 5 12 12 H 1.48503 * 109.47042 * 299.99853 * 9 7 5 13 13 C 1.34780 * 119.99999 * 90.00207 * 3 2 1 14 14 O 1.21280 * 119.99936 * 179.97438 * 13 3 2 15 15 C 1.50701 * 119.99779 * 359.97438 * 13 3 2 16 16 S 1.81398 * 109.46929 * 179.97438 * 15 13 3 17 17 C 1.76202 * 102.99867 * 180.02562 * 16 15 13 18 18 N 1.31151 * 125.53320 * 0.02562 * 17 16 15 19 19 N 1.40416 * 106.94726 * 179.72569 * 18 17 16 20 20 H 0.97003 * 126.75971 * 180.29308 * 19 18 17 21 21 C 1.34921 * 106.46961 * 0.41049 * 19 18 17 22 22 N 1.38305 * 126.00014 * 179.85370 * 21 19 18 23 23 N 1.31604 * 108.00418 * 359.59197 * 21 19 18 24 24 H 1.09004 * 109.47574 * 59.99709 * 1 2 3 25 25 H 1.09008 * 109.47111 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.47587 * 299.99865 * 1 2 3 27 27 H 1.09003 * 109.46993 * 240.00564 * 2 1 3 28 28 H 1.08991 * 109.47285 * 120.00422 * 2 1 3 29 29 H 1.09000 * 109.46942 * 30.00215 * 4 3 2 30 30 H 1.09000 * 109.47749 * 150.00120 * 4 3 2 31 31 H 0.96997 * 119.99882 * 179.97438 * 8 7 5 32 32 H 1.09000 * 109.46760 * 60.00406 * 15 13 3 33 33 H 1.08992 * 109.47483 * 300.00304 * 15 13 3 34 34 H 0.96998 * 120.00135 * 179.71923 * 22 21 19 35 35 H 0.97000 * 119.99270 * 359.71725 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2624 2.0719 -1.2687 5 6 3.6857 1.8351 -1.7037 6 1 4.3427 1.2310 -1.0958 7 6 4.1490 2.3898 -2.8779 8 7 3.3486 3.1252 -3.6185 9 14 5.9134 2.0969 -3.4169 10 1 6.1416 0.6403 -3.5937 11 1 6.1604 2.7959 -4.7035 12 1 6.8406 2.6212 -2.3821 13 6 2.2429 2.0165 1.1672 14 8 2.6476 3.1598 1.1672 15 6 1.9912 1.3062 2.4723 16 16 2.3850 2.4173 3.8511 17 6 2.0359 1.4298 5.2680 18 7 1.5988 0.1934 5.2465 19 7 1.4611 -0.2153 6.5828 20 1 1.1604 -1.0826 6.8965 21 6 1.8271 0.8366 7.3442 22 7 1.8408 0.8738 8.7267 23 7 2.1741 1.8193 6.5405 24 1 -0.3634 0.5139 -0.8900 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8900 27 1 1.8933 -0.5138 -0.8901 28 1 1.8933 -0.5138 0.8899 29 1 1.5816 1.6878 -2.0283 30 1 2.0954 3.1411 -1.1383 31 1 3.6747 3.5157 -4.4443 32 1 2.6212 0.4186 2.5302 33 1 0.9433 1.0124 2.5299 34 1 2.1251 1.6787 9.1874 35 1 1.5661 0.0950 9.2355 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000048582238.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:47:16 Heat of formation + Delta-G solvation = 58.580243 kcal Electronic energy + Delta-G solvation = -19634.142421 eV Core-core repulsion = 16409.657485 eV Total energy + Delta-G solvation = -3224.484936 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 285.100 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.99087 -39.04704 -35.36400 -35.22437 -32.83673 -32.55524 -30.39900 -30.06456 -29.43744 -26.63431 -23.31520 -23.03877 -22.66461 -21.81316 -19.16393 -18.38865 -17.04901 -16.62177 -16.35170 -16.29896 -16.15112 -15.88742 -15.29373 -14.84994 -14.20071 -13.52959 -13.40811 -13.22495 -12.70995 -12.21828 -12.07116 -11.98396 -11.78497 -11.59480 -11.18930 -10.90927 -10.74733 -10.62154 -10.59183 -10.43881 -10.12033 -9.95032 -9.64604 -9.08616 -8.84954 -8.40934 -7.73599 -7.50951 -6.02345 -4.07150 1.18886 1.56652 1.98503 2.47613 2.78528 3.28395 3.34978 3.39229 3.43581 3.49725 3.89519 4.47038 4.60770 4.93808 5.19986 5.29961 5.32394 5.53052 5.60550 5.64016 5.78335 5.95741 6.04788 6.23227 6.28578 6.49257 6.81820 7.02228 7.16903 7.43813 7.50959 7.93404 7.96090 8.24045 8.32968 8.85806 9.01644 9.57805 11.05803 Molecular weight = 285.10amu Principal moments of inertia in cm(-1) A = 0.027717 B = 0.003553 C = 0.003365 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1009.979865 B = 7878.077069 C = 8319.360840 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.104 3.896 3 N -0.589 5.589 4 C 0.247 3.753 5 C -0.528 4.528 6 H 0.058 0.942 7 C 0.062 3.938 8 N -0.895 5.895 9 Si 0.898 3.102 10 H -0.277 1.277 11 H -0.286 1.286 12 H -0.275 1.275 13 C 0.525 3.475 14 O -0.524 6.524 15 C -0.153 4.153 16 S 0.102 5.898 17 C 0.225 3.775 18 N -0.331 5.331 19 N -0.514 5.514 20 H 0.435 0.565 21 C 0.539 3.461 22 N -0.826 5.826 23 N -0.558 5.558 24 H 0.062 0.938 25 H 0.060 0.940 26 H 0.051 0.949 27 H 0.085 0.915 28 H 0.066 0.934 29 H 0.035 0.965 30 H 0.046 0.954 31 H 0.264 0.736 32 H 0.114 0.886 33 H 0.114 0.886 34 H 0.425 0.575 35 H 0.412 0.588 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.721 -9.958 21.329 24.479 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.020 4.020 3 N -0.321 5.321 4 C 0.128 3.872 5 C -0.567 4.567 6 H 0.076 0.924 7 C -0.140 4.140 8 N -0.534 5.534 9 Si 0.726 3.274 10 H -0.203 1.203 11 H -0.212 1.212 12 H -0.201 1.201 13 C 0.309 3.691 14 O -0.402 6.402 15 C -0.305 4.305 16 S 0.328 5.672 17 C -0.166 4.166 18 N -0.168 5.168 19 N -0.239 5.239 20 H 0.280 0.720 21 C 0.169 3.831 22 N -0.383 5.383 23 N -0.299 5.299 24 H 0.081 0.919 25 H 0.079 0.921 26 H 0.070 0.930 27 H 0.103 0.897 28 H 0.084 0.916 29 H 0.053 0.947 30 H 0.064 0.936 31 H 0.074 0.926 32 H 0.133 0.867 33 H 0.132 0.868 34 H 0.258 0.742 35 H 0.242 0.758 Dipole moment (debyes) X Y Z Total from point charges -6.145 -8.192 20.418 22.842 hybrid contribution 0.210 -2.355 0.667 2.457 sum -5.935 -10.547 21.085 24.311 Atomic orbital electron populations 1.22220 0.96632 1.01526 1.02399 1.21476 0.93657 0.83980 1.02920 1.48175 1.63327 1.13354 1.07212 1.19331 0.96415 0.93741 0.77668 1.21395 0.96861 1.32127 1.06327 0.92412 1.24925 0.97866 0.94868 0.96352 1.69922 1.35735 1.33353 1.14354 0.86554 0.84808 0.78213 0.77835 1.20289 1.21200 1.20068 1.19273 0.79240 0.86685 0.83933 1.90726 1.45497 1.17482 1.86459 1.23941 1.07285 1.03373 0.95905 1.86563 1.81616 1.11959 0.87061 1.26403 0.98427 0.93757 0.98011 1.78403 1.30762 1.13507 0.94080 1.47504 1.57928 1.14325 1.04150 0.72039 1.20386 0.91458 0.84814 0.86452 1.40995 1.77392 1.20831 0.99077 1.70779 1.32865 1.27416 0.98856 0.91896 0.92089 0.93041 0.89652 0.91609 0.94731 0.93633 0.92640 0.86742 0.86823 0.74215 0.75814 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.28 10.24 37.16 0.38 -1.90 16 2 C 0.10 1.66 5.93 -4.05 -0.02 1.63 16 3 N -0.59 -12.38 2.46 -175.07 -0.43 -12.81 16 4 C 0.25 6.42 5.16 -5.19 -0.03 6.39 16 5 C -0.53 -14.96 9.39 -34.44 -0.32 -15.28 16 6 H 0.06 1.63 7.81 -52.49 -0.41 1.22 16 7 C 0.06 1.78 5.46 -17.82 -0.10 1.68 16 8 N -0.89 -26.61 13.29 55.43 0.74 -25.87 16 9 Si 0.90 21.97 29.54 -169.99 -5.02 16.95 16 10 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 11 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 12 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 13 C 0.52 11.03 7.69 -10.98 -0.08 10.94 16 14 O -0.52 -13.24 15.44 5.56 0.09 -13.16 16 15 C -0.15 -2.47 4.59 36.01 0.17 -2.31 16 16 S 0.10 1.72 21.30 -107.50 -2.29 -0.57 16 17 C 0.22 3.50 8.27 -90.95 -0.75 2.75 16 18 N -0.33 -4.65 12.33 30.14 0.37 -4.28 16 19 N -0.51 -5.13 7.46 30.02 0.22 -4.91 16 20 H 0.43 2.55 8.96 -182.35 -1.63 0.92 16 21 C 0.54 5.59 9.48 -320.89 -3.04 2.55 16 22 N -0.83 -4.12 9.06 30.03 0.27 -3.85 16 23 N -0.56 -8.11 11.26 -14.19 -0.16 -8.27 16 24 H 0.06 0.93 8.14 -51.93 -0.42 0.50 16 25 H 0.06 0.66 8.14 -51.92 -0.42 0.24 16 26 H 0.05 0.67 7.22 -51.93 -0.37 0.29 16 27 H 0.09 1.40 8.07 -51.93 -0.42 0.99 16 28 H 0.07 0.89 6.44 -51.93 -0.33 0.56 16 29 H 0.03 0.90 8.07 -51.93 -0.42 0.48 16 30 H 0.05 1.33 7.42 -51.93 -0.39 0.95 16 31 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 32 H 0.11 1.69 7.40 -51.92 -0.38 1.31 16 33 H 0.11 1.61 7.18 -51.93 -0.37 1.24 16 34 H 0.43 1.73 8.95 -40.82 -0.37 1.36 16 35 H 0.41 0.60 8.95 -40.82 -0.37 0.23 16 LS Contribution 320.75 15.07 4.83 4.83 Total: -1.00 -36.49 320.75 -10.63 -47.11 By element: Atomic # 1 Polarization: 3.79 SS G_CDS: -5.45 Total: -1.65 kcal Atomic # 6 Polarization: 10.27 SS G_CDS: -3.81 Total: 6.46 kcal Atomic # 7 Polarization: -60.99 SS G_CDS: 1.01 Total: -59.98 kcal Atomic # 8 Polarization: -13.24 SS G_CDS: 0.09 Total: -13.16 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -5.02 Total: 16.95 kcal Atomic # 16 Polarization: 1.72 SS G_CDS: -2.29 Total: -0.57 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -36.49 -10.63 -47.11 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000048582238.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.695 kcal (2) G-P(sol) polarization free energy of solvation -36.486 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.209 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.628 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.115 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.580 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds