Wall clock time and date at job start Wed Apr 15 2020 11:47:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46494 * 109.46923 * 2 1 4 4 C 1.46500 * 120.00469 * 270.00196 * 3 2 1 5 5 C 1.50700 * 109.47061 * 270.00279 * 4 3 2 6 6 H 1.07994 * 119.99989 * 359.97438 * 5 4 3 7 7 C 1.37875 * 120.00097 * 179.97438 * 5 4 3 8 8 N 1.31520 * 120.00009 * 359.97438 * 7 5 4 9 9 Si 1.86801 * 120.00189 * 179.97438 * 7 5 4 10 10 H 1.48500 * 109.47005 * 60.00103 * 9 7 5 11 11 H 1.48499 * 109.47113 * 179.97438 * 9 7 5 12 12 H 1.48503 * 109.47042 * 299.99853 * 9 7 5 13 13 C 1.34780 * 119.99999 * 90.00207 * 3 2 1 14 14 O 1.21280 * 119.99936 * 179.97438 * 13 3 2 15 15 C 1.50701 * 119.99779 * 359.97438 * 13 3 2 16 16 S 1.81398 * 109.46929 * 179.97438 * 15 13 3 17 17 C 1.76202 * 102.99867 * 180.02562 * 16 15 13 18 18 N 1.31151 * 125.53320 * 0.02562 * 17 16 15 19 19 N 1.40416 * 106.94726 * 179.72569 * 18 17 16 20 20 H 0.97003 * 126.75971 * 180.29308 * 19 18 17 21 21 C 1.34921 * 106.46961 * 0.41049 * 19 18 17 22 22 N 1.38305 * 126.00014 * 179.85370 * 21 19 18 23 23 N 1.31604 * 108.00418 * 359.59197 * 21 19 18 24 24 H 1.09004 * 109.47574 * 59.99709 * 1 2 3 25 25 H 1.09008 * 109.47111 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.47587 * 299.99865 * 1 2 3 27 27 H 1.09003 * 109.46993 * 240.00564 * 2 1 3 28 28 H 1.08991 * 109.47285 * 120.00422 * 2 1 3 29 29 H 1.09000 * 109.46942 * 30.00215 * 4 3 2 30 30 H 1.09000 * 109.47749 * 150.00120 * 4 3 2 31 31 H 0.96997 * 119.99882 * 179.97438 * 8 7 5 32 32 H 1.09000 * 109.46760 * 60.00406 * 15 13 3 33 33 H 1.08992 * 109.47483 * 300.00304 * 15 13 3 34 34 H 0.96998 * 120.00135 * 179.71923 * 22 21 19 35 35 H 0.97000 * 119.99270 * 359.71725 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2624 2.0719 -1.2687 5 6 3.6857 1.8351 -1.7037 6 1 4.3427 1.2310 -1.0958 7 6 4.1490 2.3898 -2.8779 8 7 3.3486 3.1252 -3.6185 9 14 5.9134 2.0969 -3.4169 10 1 6.1416 0.6403 -3.5937 11 1 6.1604 2.7959 -4.7035 12 1 6.8406 2.6212 -2.3821 13 6 2.2429 2.0165 1.1672 14 8 2.6476 3.1598 1.1672 15 6 1.9912 1.3062 2.4723 16 16 2.3850 2.4173 3.8511 17 6 2.0359 1.4298 5.2680 18 7 1.5988 0.1934 5.2465 19 7 1.4611 -0.2153 6.5828 20 1 1.1604 -1.0826 6.8965 21 6 1.8271 0.8366 7.3442 22 7 1.8408 0.8738 8.7267 23 7 2.1741 1.8193 6.5405 24 1 -0.3634 0.5139 -0.8900 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8900 27 1 1.8933 -0.5138 -0.8901 28 1 1.8933 -0.5138 0.8899 29 1 1.5816 1.6878 -2.0283 30 1 2.0954 3.1411 -1.1383 31 1 3.6747 3.5157 -4.4443 32 1 2.6212 0.4186 2.5302 33 1 0.9433 1.0124 2.5299 34 1 2.1251 1.6787 9.1874 35 1 1.5661 0.0950 9.2355 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000048582238.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:47:16 Heat of formation + Delta-G solvation = 33.054076 kcal Electronic energy + Delta-G solvation = -19635.249319 eV Core-core repulsion = 16409.657485 eV Total energy + Delta-G solvation = -3225.591834 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 285.100 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -42.91149 -40.73495 -37.03879 -35.89385 -34.92864 -33.47637 -31.95599 -31.33677 -30.53105 -28.55866 -24.92255 -24.30533 -24.10638 -22.71987 -20.30154 -19.67816 -18.62118 -18.03899 -17.91193 -17.32304 -17.16741 -16.86454 -16.70707 -16.48457 -15.96985 -14.92671 -14.74641 -14.62827 -14.38585 -13.79183 -13.51869 -13.24004 -13.17478 -13.04352 -12.65146 -12.58949 -12.50794 -12.14484 -11.92449 -11.72643 -11.65690 -11.54771 -11.01829 -10.81437 -10.61521 -9.64917 -9.49968 -8.73185 -8.20404 -6.34779 -0.03119 0.62497 0.98927 1.38846 1.43511 1.50287 1.55490 1.66673 1.82776 2.26130 2.44140 2.89273 3.09666 3.47479 3.74089 3.95360 4.07721 4.28769 4.42842 4.63243 4.73281 4.92803 4.98249 5.06180 5.10093 5.23629 5.39507 5.57774 5.66688 5.82861 6.07424 6.24031 6.59925 6.62936 6.74895 7.18270 7.23089 7.39227 8.86771 Molecular weight = 285.10amu Principal moments of inertia in cm(-1) A = 0.027717 B = 0.003553 C = 0.003365 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1009.979865 B = 7878.077069 C = 8319.360840 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.097 3.903 3 N -0.593 5.593 4 C 0.263 3.737 5 C -0.545 4.545 6 H 0.055 0.945 7 C 0.009 3.991 8 N -0.928 5.928 9 Si 0.966 3.034 10 H -0.260 1.260 11 H -0.279 1.279 12 H -0.278 1.278 13 C 0.517 3.483 14 O -0.577 6.577 15 C -0.128 4.128 16 S 0.058 5.942 17 C 0.216 3.784 18 N -0.342 5.342 19 N -0.500 5.500 20 H 0.454 0.546 21 C 0.544 3.456 22 N -0.798 5.798 23 N -0.595 5.595 24 H 0.042 0.958 25 H 0.096 0.904 26 H 0.057 0.943 27 H 0.078 0.922 28 H 0.098 0.902 29 H 0.028 0.972 30 H 0.001 0.999 31 H 0.267 0.733 32 H 0.134 0.866 33 H 0.139 0.861 34 H 0.432 0.568 35 H 0.431 0.569 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.744 -12.621 23.347 27.383 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.025 4.025 3 N -0.324 5.324 4 C 0.142 3.858 5 C -0.583 4.583 6 H 0.073 0.927 7 C -0.190 4.190 8 N -0.568 5.568 9 Si 0.790 3.210 10 H -0.184 1.184 11 H -0.204 1.204 12 H -0.203 1.203 13 C 0.304 3.696 14 O -0.458 6.458 15 C -0.279 4.279 16 S 0.284 5.716 17 C -0.175 4.175 18 N -0.178 5.178 19 N -0.228 5.228 20 H 0.303 0.697 21 C 0.174 3.826 22 N -0.358 5.358 23 N -0.339 5.339 24 H 0.061 0.939 25 H 0.115 0.885 26 H 0.076 0.924 27 H 0.097 0.903 28 H 0.117 0.883 29 H 0.046 0.954 30 H 0.019 0.981 31 H 0.076 0.924 32 H 0.152 0.848 33 H 0.157 0.843 34 H 0.267 0.733 35 H 0.265 0.735 Dipole moment (debyes) X Y Z Total from point charges -6.207 -10.946 22.509 25.787 hybrid contribution 0.152 -1.578 0.201 1.598 sum -6.055 -12.523 22.710 26.631 Atomic orbital electron populations 1.22159 0.94435 1.03623 1.01777 1.21820 0.95446 0.81071 1.04209 1.48167 1.63296 1.15181 1.05729 1.18780 0.95480 0.91711 0.79851 1.21689 0.97858 1.32197 1.06578 0.92692 1.25834 1.02309 0.94448 0.96412 1.70043 1.37778 1.34140 1.14799 0.85489 0.79127 0.79012 0.77326 1.18445 1.20401 1.20349 1.20015 0.77997 0.86255 0.85350 1.90696 1.47711 1.19957 1.87442 1.23675 1.09094 1.02632 0.92508 1.86701 1.82620 1.13587 0.88737 1.25951 0.99768 0.94092 0.97712 1.78259 1.30412 1.12768 0.96403 1.47299 1.57541 1.15133 1.02804 0.69701 1.20508 0.90286 0.83959 0.87871 1.41057 1.75752 1.22054 0.96899 1.70659 1.34687 1.29530 0.98983 0.93857 0.88544 0.92367 0.90309 0.88341 0.95423 0.98125 0.92391 0.84770 0.84344 0.73341 0.73461 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.02 10.24 71.98 0.74 -3.29 16 2 C 0.10 2.94 5.93 86.38 0.51 3.45 16 3 N -0.59 -25.25 2.46 -826.18 -2.03 -27.28 16 4 C 0.26 14.23 5.16 85.63 0.44 14.67 16 5 C -0.54 -31.56 9.39 25.60 0.24 -31.32 16 6 H 0.05 3.14 7.81 -2.91 -0.02 3.12 16 7 C 0.01 0.53 5.46 84.65 0.46 0.99 16 8 N -0.93 -56.51 13.29 21.45 0.28 -56.23 16 9 Si 0.97 45.31 29.54 68.60 2.03 47.34 16 10 H -0.26 -11.40 7.11 99.48 0.71 -10.70 16 11 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 12 H -0.28 -13.09 7.11 99.48 0.71 -12.38 16 13 C 0.52 22.10 7.69 87.66 0.67 22.77 16 14 O -0.58 -30.51 15.44 -3.03 -0.05 -30.56 16 15 C -0.13 -3.99 4.59 71.24 0.33 -3.66 16 16 S 0.06 1.96 21.30 -56.49 -1.20 0.75 16 17 C 0.22 6.51 8.27 180.46 1.49 8.00 16 18 N -0.34 -8.82 12.33 -58.57 -0.72 -9.54 16 19 N -0.50 -8.51 7.46 -58.93 -0.44 -8.95 16 20 H 0.45 3.73 8.96 -213.11 -1.91 1.82 16 21 C 0.54 9.90 9.48 260.82 2.47 12.38 16 22 N -0.80 -5.40 9.06 -58.91 -0.53 -5.93 16 23 N -0.60 -16.55 11.26 -198.80 -2.24 -18.78 16 24 H 0.04 1.24 8.14 -2.38 -0.02 1.22 16 25 H 0.10 1.74 8.14 -2.38 -0.02 1.72 16 26 H 0.06 1.37 7.22 -2.39 -0.02 1.35 16 27 H 0.08 2.51 8.07 -2.39 -0.02 2.49 16 28 H 0.10 2.36 6.44 -2.39 -0.02 2.35 16 29 H 0.03 1.51 8.07 -2.39 -0.02 1.49 16 30 H 0.00 0.04 7.42 -2.39 -0.02 0.02 16 31 H 0.27 15.29 8.31 -92.71 -0.77 14.52 16 32 H 0.13 3.67 7.40 -2.39 -0.02 3.65 16 33 H 0.14 3.63 7.18 -2.39 -0.02 3.61 16 34 H 0.43 2.25 8.95 -92.71 -0.83 1.42 16 35 H 0.43 -0.40 8.95 -92.71 -0.83 -1.23 16 Total: -1.00 -82.70 320.75 0.05 -82.65 By element: Atomic # 1 Polarization: 4.94 SS G_CDS: -2.41 Total: 2.54 kcal Atomic # 6 Polarization: 16.63 SS G_CDS: 7.36 Total: 23.99 kcal Atomic # 7 Polarization: -121.04 SS G_CDS: -5.68 Total: -126.71 kcal Atomic # 8 Polarization: -30.51 SS G_CDS: -0.05 Total: -30.56 kcal Atomic # 14 Polarization: 45.31 SS G_CDS: 2.03 Total: 47.34 kcal Atomic # 16 Polarization: 1.96 SS G_CDS: -1.20 Total: 0.75 kcal Total: -82.70 0.05 -82.65 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000048582238.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.704 kcal (2) G-P(sol) polarization free energy of solvation -82.704 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.000 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.054 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.650 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.054 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds