Wall clock time and date at job start Wed Apr 15 2020 11:47:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46494 * 109.46875 * 2 1 4 4 C 1.46507 * 119.99901 * 269.99582 * 3 2 1 5 5 C 1.50697 * 109.47160 * 270.00450 * 4 3 2 6 6 H 1.08001 * 120.00094 * 359.97438 * 5 4 3 7 7 C 1.37879 * 119.99744 * 179.97438 * 5 4 3 8 8 N 1.31514 * 119.99751 * 359.97438 * 7 5 4 9 9 Si 1.86797 * 119.99893 * 179.97438 * 7 5 4 10 10 H 1.48502 * 109.47242 * 0.02562 * 9 7 5 11 11 H 1.48498 * 109.47065 * 120.00110 * 9 7 5 12 12 H 1.48496 * 109.47351 * 240.00251 * 9 7 5 13 13 C 1.34774 * 120.00571 * 89.99946 * 3 2 1 14 14 O 1.21272 * 120.00650 * 179.97438 * 13 3 2 15 15 C 1.50701 * 119.99521 * 359.97438 * 13 3 2 16 16 S 1.81001 * 109.47162 * 179.97438 * 15 13 3 17 17 C 1.76201 * 100.00336 * 180.02562 * 16 15 13 18 18 N 1.31541 * 126.44793 * 359.97438 * 17 16 15 19 19 N 1.28424 * 110.49728 * 180.02562 * 18 17 16 20 20 N 1.28903 * 110.34255 * 0.02562 * 19 18 17 21 21 N 1.35390 * 126.45619 * 180.02562 * 17 16 15 22 22 C 1.46504 * 127.38494 * 359.96145 * 21 17 16 23 23 H 1.09003 * 109.47282 * 180.02562 * 1 2 3 24 24 H 1.09003 * 109.47428 * 299.99760 * 1 2 3 25 25 H 1.08996 * 109.47471 * 60.00567 * 1 2 3 26 26 H 1.08998 * 109.46743 * 239.99664 * 2 1 3 27 27 H 1.08999 * 109.46623 * 119.99711 * 2 1 3 28 28 H 1.09006 * 109.46700 * 30.00695 * 4 3 2 29 29 H 1.08998 * 109.46771 * 149.99723 * 4 3 2 30 30 H 0.97002 * 119.99426 * 179.97438 * 8 7 5 31 31 H 1.09003 * 109.46998 * 60.00395 * 15 13 3 32 32 H 1.08999 * 109.47548 * 299.99800 * 15 13 3 33 33 H 1.08996 * 109.47324 * 89.99735 * 22 21 17 34 34 H 1.09001 * 109.47463 * 209.99721 * 22 21 17 35 35 H 1.09005 * 109.47095 * 329.99891 * 22 21 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2625 2.0718 -1.2688 5 6 3.6858 1.8349 -1.7038 6 1 4.3428 1.2308 -1.0958 7 6 4.1490 2.3895 -2.8780 8 7 3.3487 3.1248 -3.6186 9 14 5.9135 2.0966 -3.4169 10 1 6.6011 1.2414 -2.4164 11 1 5.9214 1.4170 -4.7372 12 1 6.6204 3.3979 -3.5258 13 6 2.2429 2.0166 1.1671 14 8 2.6475 3.1599 1.1671 15 6 1.9912 1.3064 2.4722 16 16 2.3841 2.4151 3.8480 17 6 2.0107 1.3592 5.2082 18 7 1.5719 0.1210 5.1389 19 7 1.4008 -0.3620 6.3165 20 7 1.7109 0.5142 7.2097 21 7 2.1205 1.6696 6.5215 22 6 2.5697 2.9379 7.1012 23 1 -0.3634 -1.0277 0.0005 24 1 -0.3634 0.5138 0.8900 25 1 -0.3634 0.5137 -0.8900 26 1 1.8933 -0.5139 -0.8900 27 1 1.8933 -0.5138 0.8900 28 1 1.5816 1.6876 -2.0284 29 1 2.0954 3.1410 -1.1385 30 1 3.6748 3.5152 -4.4445 31 1 2.6212 0.4188 2.5302 32 1 0.9431 1.0126 2.5299 33 1 1.7126 3.5956 7.2447 34 1 3.0477 2.7490 8.0624 35 1 3.2833 3.4127 6.4276 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000048583159.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:47:18 Heat of formation + Delta-G solvation = 84.904329 kcal Electronic energy + Delta-G solvation = -19872.109964 eV Core-core repulsion = 16648.766525 eV Total energy + Delta-G solvation = -3223.343438 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 285.100 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -42.99608 -39.24727 -35.53102 -35.35287 -32.94357 -32.40896 -30.38542 -29.99804 -28.52938 -26.79610 -23.83413 -23.26150 -23.12229 -22.65368 -19.01048 -17.97860 -16.96973 -16.91314 -16.78113 -16.42765 -15.69549 -15.10372 -14.67916 -14.23713 -14.07439 -13.96844 -13.53253 -13.42209 -12.97599 -12.76102 -12.42343 -12.18318 -12.09007 -11.72358 -11.38109 -11.27328 -11.18496 -10.95770 -10.84881 -10.79522 -10.66728 -10.57394 -10.21021 -9.71225 -9.29319 -8.50273 -8.14734 -7.84162 -6.11395 -4.16454 0.54829 0.69306 1.68302 1.90371 2.05076 3.08065 3.26228 3.34220 3.37993 3.70812 3.96788 4.38767 4.54619 4.63317 4.73911 4.92754 4.98239 5.14048 5.18743 5.19648 5.23813 5.39337 5.56061 5.71100 5.75881 5.99833 6.16743 6.42948 6.89459 7.30934 7.38306 7.84006 8.13562 8.17758 8.23111 8.68422 8.89912 9.48977 10.96820 Molecular weight = 285.10amu Principal moments of inertia in cm(-1) A = 0.024845 B = 0.003902 C = 0.003640 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1126.733288 B = 7173.357236 C = 7690.067715 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.101 3.899 3 N -0.584 5.584 4 C 0.246 3.754 5 C -0.529 4.529 6 H 0.059 0.941 7 C 0.062 3.938 8 N -0.893 5.893 9 Si 0.899 3.101 10 H -0.273 1.273 11 H -0.283 1.283 12 H -0.282 1.282 13 C 0.523 3.477 14 O -0.529 6.529 15 C -0.149 4.149 16 S 0.115 5.885 17 C 0.201 3.799 18 N -0.339 5.339 19 N -0.033 5.033 20 N -0.090 5.090 21 N -0.368 5.368 22 C 0.086 3.914 23 H 0.063 0.937 24 H 0.050 0.950 25 H 0.062 0.938 26 H 0.087 0.913 27 H 0.068 0.932 28 H 0.036 0.964 29 H 0.046 0.954 30 H 0.263 0.737 31 H 0.125 0.875 32 H 0.124 0.876 33 H 0.095 0.905 34 H 0.105 0.895 35 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.992 -2.382 16.381 17.027 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.023 4.023 3 N -0.315 5.315 4 C 0.128 3.872 5 C -0.568 4.568 6 H 0.077 0.923 7 C -0.140 4.140 8 N -0.532 5.532 9 Si 0.726 3.274 10 H -0.198 1.198 11 H -0.209 1.209 12 H -0.208 1.208 13 C 0.307 3.693 14 O -0.407 6.407 15 C -0.301 4.301 16 S 0.340 5.660 17 C -0.183 4.183 18 N -0.196 5.196 19 N -0.029 5.029 20 N -0.078 5.078 21 N -0.167 5.167 22 C -0.055 4.055 23 H 0.082 0.918 24 H 0.070 0.930 25 H 0.081 0.919 26 H 0.106 0.894 27 H 0.086 0.914 28 H 0.054 0.946 29 H 0.064 0.936 30 H 0.073 0.927 31 H 0.143 0.857 32 H 0.143 0.857 33 H 0.113 0.887 34 H 0.123 0.877 35 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -3.823 -1.777 16.753 17.275 hybrid contribution 0.795 -0.634 -0.469 1.120 sum -3.029 -2.411 16.284 16.738 Atomic orbital electron populations 1.22215 0.96401 1.01818 1.02360 1.21542 0.93839 0.83681 1.03227 1.48194 1.62699 1.13477 1.07139 1.19378 0.96604 0.93693 0.77562 1.21447 0.96767 1.32168 1.06414 0.92272 1.24928 0.97935 0.94822 0.96320 1.69938 1.35627 1.33336 1.14308 0.86434 0.84483 0.78094 0.78372 1.19760 1.20928 1.20835 1.19245 0.79435 0.86665 0.83971 1.90723 1.46102 1.17501 1.86419 1.24086 1.08446 1.02814 0.94766 1.86544 1.80079 1.10659 0.88731 1.28429 1.00008 0.97911 0.91976 1.74952 1.22309 1.05710 1.16601 1.77816 1.10732 1.20460 0.93928 1.82435 1.18607 0.89101 1.17624 1.51418 1.47620 1.14158 1.03465 1.22281 1.02064 0.79716 1.01484 0.91816 0.93047 0.91881 0.89432 0.91351 0.94556 0.93630 0.92683 0.85668 0.85747 0.88692 0.87678 0.87810 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.14 10.24 37.16 0.38 -1.76 16 2 C 0.10 1.51 5.93 -4.04 -0.02 1.49 16 3 N -0.58 -11.43 2.46 -175.06 -0.43 -11.86 16 4 C 0.25 6.08 5.16 -5.19 -0.03 6.05 16 5 C -0.53 -14.38 9.39 -34.44 -0.32 -14.70 16 6 H 0.06 1.61 7.81 -52.49 -0.41 1.20 16 7 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 8 N -0.89 -25.73 13.29 55.43 0.74 -24.99 16 9 Si 0.90 21.26 29.54 -169.99 -5.02 16.24 16 10 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 11 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 12 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 13 C 0.52 9.92 7.69 -10.99 -0.08 9.84 16 14 O -0.53 -12.10 15.44 5.56 0.09 -12.01 16 15 C -0.15 -2.08 4.27 36.01 0.15 -1.93 16 16 S 0.12 1.48 20.93 -107.50 -2.25 -0.77 16 17 C 0.20 2.59 8.15 -89.18 -0.73 1.86 16 18 N -0.34 -5.00 11.57 30.50 0.35 -4.65 16 19 N -0.03 -0.51 13.38 60.35 0.81 0.30 16 20 N -0.09 -1.23 13.93 60.35 0.84 -0.39 16 21 N -0.37 -4.14 4.09 -68.10 -0.28 -4.42 16 22 C 0.09 0.52 11.40 59.85 0.68 1.20 16 23 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 24 H 0.05 0.62 7.22 -51.93 -0.37 0.24 16 25 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 26 H 0.09 1.36 8.07 -51.93 -0.42 0.94 16 27 H 0.07 0.86 6.44 -51.93 -0.33 0.52 16 28 H 0.04 0.91 8.07 -51.93 -0.42 0.49 16 29 H 0.05 1.27 7.42 -51.93 -0.39 0.88 16 30 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 31 H 0.13 1.61 7.40 -51.91 -0.38 1.23 16 32 H 0.12 1.53 7.18 -51.92 -0.37 1.16 16 33 H 0.09 0.41 8.14 -51.93 -0.42 -0.01 16 34 H 0.10 0.44 8.14 -51.93 -0.42 0.01 16 35 H 0.10 0.50 7.85 -51.93 -0.41 0.10 16 LS Contribution 321.97 15.07 4.85 4.85 Total: -1.00 -33.48 321.97 -4.70 -38.18 By element: Atomic # 1 Polarization: 0.18 SS G_CDS: -4.33 Total: -4.15 kcal Atomic # 6 Polarization: 3.73 SS G_CDS: -0.07 Total: 3.67 kcal Atomic # 7 Polarization: -48.04 SS G_CDS: 2.03 Total: -46.01 kcal Atomic # 8 Polarization: -12.10 SS G_CDS: 0.09 Total: -12.01 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.02 Total: 16.24 kcal Atomic # 16 Polarization: 1.48 SS G_CDS: -2.25 Total: -0.77 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -33.48 -4.70 -38.18 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000048583159.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.089 kcal (2) G-P(sol) polarization free energy of solvation -33.480 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 89.608 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.704 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.184 kcal (6) G-S(sol) free energy of system = (1) + (5) 84.904 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds