Wall clock time and date at job start Wed Apr 15 2020 11:47:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46494 * 109.46875 * 2 1 4 4 C 1.46507 * 119.99901 * 269.99582 * 3 2 1 5 5 C 1.50697 * 109.47160 * 270.00450 * 4 3 2 6 6 H 1.08001 * 120.00094 * 359.97438 * 5 4 3 7 7 C 1.37879 * 119.99744 * 179.97438 * 5 4 3 8 8 N 1.31514 * 119.99751 * 359.97438 * 7 5 4 9 9 Si 1.86797 * 119.99893 * 179.97438 * 7 5 4 10 10 H 1.48502 * 109.47242 * 0.02562 * 9 7 5 11 11 H 1.48498 * 109.47065 * 120.00110 * 9 7 5 12 12 H 1.48496 * 109.47351 * 240.00251 * 9 7 5 13 13 C 1.34774 * 120.00571 * 89.99946 * 3 2 1 14 14 O 1.21272 * 120.00650 * 179.97438 * 13 3 2 15 15 C 1.50701 * 119.99521 * 359.97438 * 13 3 2 16 16 S 1.81001 * 109.47162 * 179.97438 * 15 13 3 17 17 C 1.76201 * 100.00336 * 180.02562 * 16 15 13 18 18 N 1.31541 * 126.44793 * 359.97438 * 17 16 15 19 19 N 1.28424 * 110.49728 * 180.02562 * 18 17 16 20 20 N 1.28903 * 110.34255 * 0.02562 * 19 18 17 21 21 N 1.35390 * 126.45619 * 180.02562 * 17 16 15 22 22 C 1.46504 * 127.38494 * 359.96145 * 21 17 16 23 23 H 1.09003 * 109.47282 * 180.02562 * 1 2 3 24 24 H 1.09003 * 109.47428 * 299.99760 * 1 2 3 25 25 H 1.08996 * 109.47471 * 60.00567 * 1 2 3 26 26 H 1.08998 * 109.46743 * 239.99664 * 2 1 3 27 27 H 1.08999 * 109.46623 * 119.99711 * 2 1 3 28 28 H 1.09006 * 109.46700 * 30.00695 * 4 3 2 29 29 H 1.08998 * 109.46771 * 149.99723 * 4 3 2 30 30 H 0.97002 * 119.99426 * 179.97438 * 8 7 5 31 31 H 1.09003 * 109.46998 * 60.00395 * 15 13 3 32 32 H 1.08999 * 109.47548 * 299.99800 * 15 13 3 33 33 H 1.08996 * 109.47324 * 89.99735 * 22 21 17 34 34 H 1.09001 * 109.47463 * 209.99721 * 22 21 17 35 35 H 1.09005 * 109.47095 * 329.99891 * 22 21 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2625 2.0718 -1.2688 5 6 3.6858 1.8349 -1.7038 6 1 4.3428 1.2308 -1.0958 7 6 4.1490 2.3895 -2.8780 8 7 3.3487 3.1248 -3.6186 9 14 5.9135 2.0966 -3.4169 10 1 6.6011 1.2414 -2.4164 11 1 5.9214 1.4170 -4.7372 12 1 6.6204 3.3979 -3.5258 13 6 2.2429 2.0166 1.1671 14 8 2.6475 3.1599 1.1671 15 6 1.9912 1.3064 2.4722 16 16 2.3841 2.4151 3.8480 17 6 2.0107 1.3592 5.2082 18 7 1.5719 0.1210 5.1389 19 7 1.4008 -0.3620 6.3165 20 7 1.7109 0.5142 7.2097 21 7 2.1205 1.6696 6.5215 22 6 2.5697 2.9379 7.1012 23 1 -0.3634 -1.0277 0.0005 24 1 -0.3634 0.5138 0.8900 25 1 -0.3634 0.5137 -0.8900 26 1 1.8933 -0.5139 -0.8900 27 1 1.8933 -0.5138 0.8900 28 1 1.5816 1.6876 -2.0284 29 1 2.0954 3.1410 -1.1385 30 1 3.6748 3.5152 -4.4445 31 1 2.6212 0.4188 2.5302 32 1 0.9431 1.0126 2.5299 33 1 1.7126 3.5956 7.2447 34 1 3.0477 2.7490 8.0624 35 1 3.2833 3.4127 6.4276 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000048583159.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:47:17 Heat of formation + Delta-G solvation = 62.005488 kcal Electronic energy + Delta-G solvation = -19873.102932 eV Core-core repulsion = 16648.766525 eV Total energy + Delta-G solvation = -3224.336406 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 285.100 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -43.98949 -40.79297 -37.07843 -36.21059 -34.93999 -33.44486 -31.91635 -31.23513 -29.24989 -28.61235 -25.06723 -24.61670 -24.26652 -24.01827 -20.35279 -19.13135 -18.61798 -18.08072 -17.90010 -17.81092 -17.20374 -16.59919 -16.21066 -15.55147 -14.96547 -14.78946 -14.69978 -14.67354 -14.43565 -13.90505 -13.77763 -13.53148 -13.25233 -13.18696 -13.03894 -12.68210 -12.54095 -12.34740 -12.20318 -12.14053 -11.92943 -11.80211 -11.67622 -11.52025 -10.87563 -10.62994 -9.53886 -9.12198 -8.21497 -6.35418 -0.47643 -0.26825 0.61339 1.00637 1.11358 1.39138 1.40906 1.52177 1.61366 2.22233 2.42575 3.09070 3.13669 3.40747 3.70765 3.88927 4.07109 4.12312 4.24412 4.28836 4.42661 4.49340 4.57482 4.63495 4.92940 4.96937 4.98421 5.06843 5.23060 5.39868 5.56340 5.80480 6.06116 6.59763 6.74536 7.18216 7.21376 7.37347 8.85957 Molecular weight = 285.10amu Principal moments of inertia in cm(-1) A = 0.024845 B = 0.003902 C = 0.003640 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1126.733288 B = 7173.357236 C = 7690.067715 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.095 3.905 3 N -0.590 5.590 4 C 0.262 3.738 5 C -0.542 4.542 6 H 0.056 0.944 7 C 0.010 3.990 8 N -0.927 5.927 9 Si 0.965 3.035 10 H -0.267 1.267 11 H -0.272 1.272 12 H -0.282 1.282 13 C 0.518 3.482 14 O -0.577 6.577 15 C -0.141 4.141 16 S 0.130 5.870 17 C 0.197 3.803 18 N -0.354 5.354 19 N -0.057 5.057 20 N -0.096 5.096 21 N -0.355 5.355 22 C 0.070 3.930 23 H 0.093 0.907 24 H 0.059 0.941 25 H 0.043 0.957 26 H 0.078 0.922 27 H 0.100 0.900 28 H 0.027 0.973 29 H 0.004 0.996 30 H 0.267 0.733 31 H 0.142 0.858 32 H 0.146 0.854 33 H 0.116 0.884 34 H 0.126 0.874 35 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.486 -3.266 17.813 18.442 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.027 4.027 3 N -0.321 5.321 4 C 0.141 3.859 5 C -0.581 4.581 6 H 0.074 0.926 7 C -0.189 4.189 8 N -0.567 5.567 9 Si 0.790 3.210 10 H -0.191 1.191 11 H -0.197 1.197 12 H -0.208 1.208 13 C 0.305 3.695 14 O -0.458 6.458 15 C -0.292 4.292 16 S 0.354 5.646 17 C -0.187 4.187 18 N -0.212 5.212 19 N -0.053 5.053 20 N -0.084 5.084 21 N -0.154 5.154 22 C -0.069 4.069 23 H 0.112 0.888 24 H 0.078 0.922 25 H 0.062 0.938 26 H 0.097 0.903 27 H 0.118 0.882 28 H 0.045 0.955 29 H 0.022 0.978 30 H 0.076 0.924 31 H 0.160 0.840 32 H 0.164 0.836 33 H 0.135 0.865 34 H 0.144 0.856 35 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -3.332 -2.689 18.217 18.714 hybrid contribution 0.620 -0.285 -0.844 1.085 sum -2.712 -2.974 17.373 17.833 Atomic orbital electron populations 1.22160 0.94442 1.03632 1.01849 1.21842 0.95439 0.81073 1.04347 1.48161 1.62901 1.15136 1.05861 1.18805 0.95455 0.91811 0.79806 1.21737 0.97818 1.32001 1.06547 0.92603 1.25800 1.02144 0.94504 0.96451 1.70050 1.37596 1.34234 1.14801 0.85403 0.79301 0.77979 0.78347 1.19080 1.19736 1.20789 1.19943 0.78105 0.86234 0.85259 1.90696 1.48028 1.19703 1.87375 1.23916 1.10186 1.02778 0.92344 1.86585 1.80235 1.09778 0.88011 1.28324 1.00296 0.97553 0.92563 1.74856 1.22863 1.06584 1.16878 1.77804 1.11988 1.21308 0.94235 1.82356 1.18550 0.89707 1.17806 1.51736 1.46068 1.14744 1.02889 1.22819 1.03470 0.77975 1.02646 0.88779 0.92164 0.93803 0.90341 0.88179 0.95538 0.97786 0.92429 0.83985 0.83580 0.86536 0.85554 0.86490 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.82 10.24 71.98 0.74 -3.08 16 2 C 0.10 2.71 5.93 86.38 0.51 3.22 16 3 N -0.59 -23.18 2.46 -826.16 -2.03 -25.21 16 4 C 0.26 13.41 5.16 85.63 0.44 13.85 16 5 C -0.54 -29.99 9.39 25.60 0.24 -29.75 16 6 H 0.06 3.05 7.81 -2.91 -0.02 3.03 16 7 C 0.01 0.57 5.46 84.66 0.46 1.03 16 8 N -0.93 -54.49 13.29 21.45 0.28 -54.21 16 9 Si 0.96 43.68 29.54 68.60 2.03 45.70 16 10 H -0.27 -11.68 7.11 99.48 0.71 -10.97 16 11 H -0.27 -11.76 7.11 99.48 0.71 -11.05 16 12 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 13 C 0.52 19.53 7.69 87.66 0.67 20.21 16 14 O -0.58 -26.87 15.44 -3.00 -0.05 -26.92 16 15 C -0.14 -3.67 4.27 71.24 0.30 -3.37 16 16 S 0.13 3.10 20.93 -56.49 -1.18 1.92 16 17 C 0.20 4.66 8.15 179.85 1.47 6.13 16 18 N -0.35 -9.79 11.57 -57.41 -0.66 -10.45 16 19 N -0.06 -1.67 13.38 37.02 0.50 -1.18 16 20 N -0.10 -2.46 13.93 37.02 0.52 -1.94 16 21 N -0.35 -7.19 4.09 -369.36 -1.51 -8.70 16 22 C 0.07 0.64 11.40 127.77 1.46 2.10 16 23 H 0.09 1.66 8.14 -2.39 -0.02 1.64 16 24 H 0.06 1.31 7.22 -2.39 -0.02 1.29 16 25 H 0.04 1.19 8.14 -2.39 -0.02 1.17 16 26 H 0.08 2.38 8.07 -2.39 -0.02 2.36 16 27 H 0.10 2.22 6.44 -2.39 -0.02 2.21 16 28 H 0.03 1.39 8.07 -2.38 -0.02 1.37 16 29 H 0.00 0.24 7.42 -2.39 -0.02 0.22 16 30 H 0.27 14.71 8.31 -92.71 -0.77 13.94 16 31 H 0.14 3.27 7.40 -2.39 -0.02 3.25 16 32 H 0.15 3.20 7.18 -2.40 -0.02 3.19 16 33 H 0.12 0.63 8.14 -2.39 -0.02 0.61 16 34 H 0.13 0.65 8.14 -2.39 -0.02 0.64 16 35 H 0.12 0.81 7.85 -2.38 -0.02 0.79 16 Total: -1.00 -74.22 321.97 5.29 -68.93 By element: Atomic # 1 Polarization: 0.60 SS G_CDS: 1.11 Total: 1.70 kcal Atomic # 6 Polarization: 4.05 SS G_CDS: 6.29 Total: 10.34 kcal Atomic # 7 Polarization: -98.77 SS G_CDS: -2.91 Total: -101.68 kcal Atomic # 8 Polarization: -26.87 SS G_CDS: -0.05 Total: -26.92 kcal Atomic # 14 Polarization: 43.68 SS G_CDS: 2.03 Total: 45.70 kcal Atomic # 16 Polarization: 3.10 SS G_CDS: -1.18 Total: 1.92 kcal Total: -74.22 5.29 -68.93 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000048583159.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.932 kcal (2) G-P(sol) polarization free energy of solvation -74.217 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.714 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.291 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.926 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.005 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds