Wall clock time and date at job start Wed Apr 15 2020 11:47:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.47398 * 2 1 4 4 S 1.81404 * 109.46946 * 239.99936 * 2 1 3 5 5 C 1.76197 * 103.00109 * 64.99987 * 4 2 1 6 6 N 1.31150 * 125.53131 * 0.02690 * 5 4 2 7 7 N 1.40414 * 106.94959 * 179.97438 * 6 5 4 8 8 H 0.97002 * 126.76199 * 179.97438 * 7 6 5 9 9 C 1.34929 * 106.46869 * 359.97438 * 7 6 5 10 10 N 1.38301 * 125.99993 * 180.02562 * 9 7 6 11 11 N 1.31608 * 107.99864 * 359.75742 * 9 7 6 12 12 C 1.50699 * 109.47083 * 119.99946 * 2 1 3 13 13 O 1.21287 * 119.99919 * 99.99446 * 12 2 1 14 14 N 1.34772 * 120.00370 * 279.99712 * 12 2 1 15 15 C 1.46505 * 119.99491 * 0.02562 * 14 12 2 16 16 C 1.46500 * 120.00265 * 179.97438 * 14 12 2 17 17 C 1.50696 * 109.47035 * 90.00270 * 16 14 12 18 18 H 1.08006 * 120.00171 * 0.02562 * 17 16 14 19 19 C 1.37875 * 120.00002 * 179.97438 * 17 16 14 20 20 N 1.31512 * 120.00022 * 359.97438 * 19 17 16 21 21 Si 1.86801 * 119.99968 * 179.97438 * 19 17 16 22 22 H 1.48501 * 109.47338 * 0.02562 * 21 19 17 23 23 H 1.48497 * 109.47211 * 120.00290 * 21 19 17 24 24 H 1.48500 * 109.47044 * 240.00058 * 21 19 17 25 25 H 1.09001 * 109.47194 * 59.99819 * 1 2 3 26 26 H 1.08992 * 109.47399 * 179.97438 * 1 2 3 27 27 H 1.09004 * 109.46724 * 300.00478 * 1 2 3 28 28 H 0.96998 * 119.99875 * 359.97438 * 10 9 7 29 29 H 0.97005 * 119.99541 * 180.02562 * 10 9 7 30 30 H 1.09003 * 109.47301 * 90.00447 * 15 14 12 31 31 H 1.09005 * 109.46875 * 209.99620 * 15 14 12 32 32 H 1.08998 * 109.47226 * 329.99909 * 15 14 12 33 33 H 1.09006 * 109.47086 * 210.00155 * 16 14 12 34 34 H 1.08992 * 109.47048 * 330.00127 * 16 14 12 35 35 H 0.96999 * 119.99942 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 16 2.1346 -0.8552 -1.4812 5 6 1.5827 0.1845 -2.7922 6 7 0.9021 1.2963 -2.6483 7 7 0.6709 1.8044 -3.9367 8 1 0.1924 2.6173 -4.1630 9 6 1.2455 0.9391 -4.7980 10 7 1.2591 1.0524 -6.1763 11 7 1.7956 -0.0285 -4.0958 12 6 2.0323 -0.7104 1.2305 13 8 2.4063 -1.8617 1.1558 14 7 2.0659 -0.0664 2.4139 15 6 1.6136 1.3241 2.5042 16 6 2.5537 -0.7572 3.6102 17 6 4.0404 -0.5478 3.7401 18 1 4.5690 0.0414 3.0052 19 6 4.7257 -1.1073 4.7975 20 7 4.0818 -1.8235 5.6931 21 14 6.5686 -0.8483 4.9581 22 1 7.0509 -0.0108 3.8306 23 1 6.8622 -0.1642 6.2430 24 1 7.2578 -2.1634 4.9288 25 1 -0.3634 0.5139 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3633 0.5139 0.8900 28 1 0.8275 1.8078 -6.6051 29 1 1.6998 0.3760 -6.7141 30 1 0.5474 1.3454 2.7298 31 1 2.1627 1.8341 3.2958 32 1 1.7941 1.8273 1.5543 33 1 2.0520 -0.3566 4.4911 34 1 2.3431 -1.8232 3.5254 35 1 4.5640 -2.2175 6.4369 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000052413903.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:47:21 Heat of formation + Delta-G solvation = 64.458337 kcal Electronic energy + Delta-G solvation = -19876.439019 eV Core-core repulsion = 16652.208976 eV Total energy + Delta-G solvation = -3224.230043 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 285.100 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.98415 -39.11578 -35.24897 -34.87682 -33.24331 -32.54418 -32.20758 -29.73263 -27.77246 -25.95779 -24.43069 -23.28084 -22.47390 -21.80572 -19.21721 -18.45975 -17.03396 -16.73086 -16.40339 -16.34085 -16.21380 -15.83253 -15.15233 -14.62513 -14.24839 -13.80794 -13.20380 -13.02789 -12.38709 -12.21747 -12.05554 -11.96522 -11.84116 -11.68728 -11.49540 -11.19392 -10.84841 -10.62651 -10.58663 -10.35663 -10.14117 -9.83396 -9.59488 -9.00764 -8.82748 -8.41988 -7.70075 -7.51294 -6.02838 -4.07472 1.20501 1.57504 1.97981 2.46459 2.79728 3.31963 3.32894 3.40829 3.45683 3.50798 3.88809 4.47093 4.62002 4.93324 5.03703 5.18471 5.32205 5.58496 5.63649 5.76401 5.86020 5.94046 5.96888 6.14935 6.26712 6.31355 6.82670 7.00071 7.18125 7.42465 7.49974 7.93300 7.97446 8.23408 8.31762 8.86016 9.01886 9.57680 11.05401 Molecular weight = 285.10amu Principal moments of inertia in cm(-1) A = 0.030038 B = 0.003673 C = 0.003517 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 931.920792 B = 7620.529094 C = 7960.473115 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.120 4.120 3 H 0.115 0.885 4 S 0.097 5.903 5 C 0.229 3.771 6 N -0.329 5.329 7 N -0.515 5.515 8 H 0.435 0.565 9 C 0.539 3.461 10 N -0.826 5.826 11 N -0.558 5.558 12 C 0.528 3.472 13 O -0.524 6.524 14 N -0.592 5.592 15 C 0.079 3.921 16 C 0.246 3.754 17 C -0.527 4.527 18 H 0.059 0.941 19 C 0.061 3.939 20 N -0.895 5.895 21 Si 0.898 3.102 22 H -0.273 1.273 23 H -0.284 1.284 24 H -0.282 1.282 25 H 0.075 0.925 26 H 0.070 0.930 27 H 0.070 0.930 28 H 0.412 0.588 29 H 0.425 0.575 30 H 0.048 0.952 31 H 0.077 0.923 32 H 0.058 0.942 33 H 0.035 0.965 34 H 0.046 0.954 35 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.837 10.447 -20.364 24.912 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.253 4.253 3 H 0.133 0.867 4 S 0.324 5.676 5 C -0.162 4.162 6 N -0.165 5.165 7 N -0.240 5.240 8 H 0.279 0.721 9 C 0.169 3.831 10 N -0.383 5.383 11 N -0.299 5.299 12 C 0.311 3.689 13 O -0.401 6.401 14 N -0.324 5.324 15 C -0.065 4.065 16 C 0.127 3.873 17 C -0.566 4.566 18 H 0.077 0.923 19 C -0.141 4.141 20 N -0.534 5.534 21 Si 0.726 3.274 22 H -0.197 1.197 23 H -0.210 1.210 24 H -0.208 1.208 25 H 0.094 0.906 26 H 0.089 0.911 27 H 0.089 0.911 28 H 0.242 0.758 29 H 0.258 0.742 30 H 0.066 0.934 31 H 0.095 0.905 32 H 0.077 0.923 33 H 0.053 0.947 34 H 0.064 0.936 35 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -9.007 8.715 -19.615 23.277 hybrid contribution -0.046 2.222 -0.633 2.311 sum -9.053 10.937 -20.248 24.730 Atomic orbital electron populations 1.21971 0.90609 1.03742 1.03557 1.23774 1.01653 1.04373 0.95540 0.86670 1.86504 1.67112 1.24653 0.89358 1.26293 0.97492 0.95870 0.96547 1.78378 1.27255 1.13842 0.97016 1.47532 1.48933 1.23635 1.03865 0.72066 1.20386 0.90038 0.86940 0.85750 1.40997 1.65852 1.31954 0.99514 1.70779 1.31471 1.26234 1.01463 1.19271 0.79411 0.86800 0.83427 1.90722 1.47870 1.16997 1.84533 1.48049 1.62064 1.12643 1.09618 1.21756 0.98953 0.83449 1.02313 1.19368 0.94323 0.93797 0.79841 1.21471 0.92983 1.32676 1.09444 0.92264 1.24931 0.98707 0.94877 0.95561 1.69940 1.36028 1.33960 1.13447 0.86432 0.85098 0.78081 0.77775 1.19722 1.21017 1.20798 0.90601 0.91084 0.91072 0.75826 0.74230 0.93377 0.90455 0.92308 0.94692 0.93573 0.92745 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.95 8.97 37.16 0.33 -1.62 16 2 C -0.12 -2.00 2.15 -27.88 -0.06 -2.06 16 3 H 0.12 1.77 6.31 -51.92 -0.33 1.44 16 4 S 0.10 1.67 20.84 -107.50 -2.24 -0.57 16 5 C 0.23 3.57 8.03 -90.96 -0.73 2.84 16 6 N -0.33 -4.54 10.66 30.13 0.32 -4.22 16 7 N -0.52 -5.06 7.46 30.02 0.22 -4.84 16 8 H 0.43 2.49 8.96 -182.36 -1.63 0.86 16 9 C 0.54 5.58 9.48 -320.88 -3.04 2.54 16 10 N -0.83 -4.15 9.06 30.03 0.27 -3.88 16 11 N -0.56 -8.14 11.25 -14.19 -0.16 -8.30 16 12 C 0.53 11.26 6.85 -10.99 -0.08 11.19 16 13 O -0.52 -13.39 15.62 5.55 0.09 -13.31 16 14 N -0.59 -12.66 2.86 -182.95 -0.52 -13.18 16 15 C 0.08 1.27 9.56 59.85 0.57 1.84 16 16 C 0.25 6.44 5.16 -5.20 -0.03 6.41 16 17 C -0.53 -15.04 9.39 -34.44 -0.32 -15.37 16 18 H 0.06 1.70 7.81 -52.48 -0.41 1.29 16 19 C 0.06 1.76 5.46 -17.82 -0.10 1.67 16 20 N -0.89 -26.69 13.29 55.43 0.74 -25.95 16 21 Si 0.90 22.08 29.54 -169.99 -5.02 17.06 16 22 H -0.27 -6.63 7.11 56.52 0.40 -6.23 16 23 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 24 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 25 H 0.08 1.00 6.22 -51.93 -0.32 0.68 16 26 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 27 H 0.07 0.90 6.94 -51.93 -0.36 0.53 16 28 H 0.41 0.61 8.95 -40.82 -0.37 0.25 16 29 H 0.42 1.76 8.95 -40.82 -0.37 1.40 16 30 H 0.05 0.65 7.66 -51.93 -0.40 0.25 16 31 H 0.08 1.25 8.07 -51.93 -0.42 0.83 16 32 H 0.06 0.80 5.94 -51.93 -0.31 0.49 16 33 H 0.04 0.92 8.07 -51.93 -0.42 0.50 16 34 H 0.05 1.36 7.42 -51.93 -0.39 0.97 16 35 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 LS Contribution 314.72 15.07 4.74 4.74 Total: -1.00 -36.73 314.72 -10.28 -47.01 By element: Atomic # 1 Polarization: 3.27 SS G_CDS: -5.27 Total: -2.00 kcal Atomic # 6 Polarization: 10.88 SS G_CDS: -3.45 Total: 7.43 kcal Atomic # 7 Polarization: -61.24 SS G_CDS: 0.87 Total: -60.37 kcal Atomic # 8 Polarization: -13.39 SS G_CDS: 0.09 Total: -13.31 kcal Atomic # 14 Polarization: 22.08 SS G_CDS: -5.02 Total: 17.06 kcal Atomic # 16 Polarization: 1.67 SS G_CDS: -2.24 Total: -0.57 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -36.73 -10.28 -47.01 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000052413903.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.468 kcal (2) G-P(sol) polarization free energy of solvation -36.725 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.743 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.284 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.010 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.458 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds