Wall clock time and date at job start Wed Apr 15 2020 11:47:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.47398 * 2 1 4 4 S 1.81404 * 109.46946 * 239.99936 * 2 1 3 5 5 C 1.76197 * 103.00109 * 64.99987 * 4 2 1 6 6 N 1.31150 * 125.53131 * 0.02690 * 5 4 2 7 7 N 1.40414 * 106.94959 * 179.97438 * 6 5 4 8 8 H 0.97002 * 126.76199 * 179.97438 * 7 6 5 9 9 C 1.34929 * 106.46869 * 359.97438 * 7 6 5 10 10 N 1.38301 * 125.99993 * 180.02562 * 9 7 6 11 11 N 1.31608 * 107.99864 * 359.75742 * 9 7 6 12 12 C 1.50699 * 109.47083 * 119.99946 * 2 1 3 13 13 O 1.21287 * 119.99919 * 99.99446 * 12 2 1 14 14 N 1.34772 * 120.00370 * 279.99712 * 12 2 1 15 15 C 1.46505 * 119.99491 * 0.02562 * 14 12 2 16 16 C 1.46500 * 120.00265 * 179.97438 * 14 12 2 17 17 C 1.50696 * 109.47035 * 90.00270 * 16 14 12 18 18 H 1.08006 * 120.00171 * 0.02562 * 17 16 14 19 19 C 1.37875 * 120.00002 * 179.97438 * 17 16 14 20 20 N 1.31512 * 120.00022 * 359.97438 * 19 17 16 21 21 Si 1.86801 * 119.99968 * 179.97438 * 19 17 16 22 22 H 1.48501 * 109.47338 * 0.02562 * 21 19 17 23 23 H 1.48497 * 109.47211 * 120.00290 * 21 19 17 24 24 H 1.48500 * 109.47044 * 240.00058 * 21 19 17 25 25 H 1.09001 * 109.47194 * 59.99819 * 1 2 3 26 26 H 1.08992 * 109.47399 * 179.97438 * 1 2 3 27 27 H 1.09004 * 109.46724 * 300.00478 * 1 2 3 28 28 H 0.96998 * 119.99875 * 359.97438 * 10 9 7 29 29 H 0.97005 * 119.99541 * 180.02562 * 10 9 7 30 30 H 1.09003 * 109.47301 * 90.00447 * 15 14 12 31 31 H 1.09005 * 109.46875 * 209.99620 * 15 14 12 32 32 H 1.08998 * 109.47226 * 329.99909 * 15 14 12 33 33 H 1.09006 * 109.47086 * 210.00155 * 16 14 12 34 34 H 1.08992 * 109.47048 * 330.00127 * 16 14 12 35 35 H 0.96999 * 119.99942 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 16 2.1346 -0.8552 -1.4812 5 6 1.5827 0.1845 -2.7922 6 7 0.9021 1.2963 -2.6483 7 7 0.6709 1.8044 -3.9367 8 1 0.1924 2.6173 -4.1630 9 6 1.2455 0.9391 -4.7980 10 7 1.2591 1.0524 -6.1763 11 7 1.7956 -0.0285 -4.0958 12 6 2.0323 -0.7104 1.2305 13 8 2.4063 -1.8617 1.1558 14 7 2.0659 -0.0664 2.4139 15 6 1.6136 1.3241 2.5042 16 6 2.5537 -0.7572 3.6102 17 6 4.0404 -0.5478 3.7401 18 1 4.5690 0.0414 3.0052 19 6 4.7257 -1.1073 4.7975 20 7 4.0818 -1.8235 5.6931 21 14 6.5686 -0.8483 4.9581 22 1 7.0509 -0.0108 3.8306 23 1 6.8622 -0.1642 6.2430 24 1 7.2578 -2.1634 4.9288 25 1 -0.3634 0.5139 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3633 0.5139 0.8900 28 1 0.8275 1.8078 -6.6051 29 1 1.6998 0.3760 -6.7141 30 1 0.5474 1.3454 2.7298 31 1 2.1627 1.8341 3.2958 32 1 1.7941 1.8273 1.5543 33 1 2.0520 -0.3566 4.4911 34 1 2.3431 -1.8232 3.5254 35 1 4.5640 -2.2175 6.4369 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000052413903.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:47:20 Heat of formation + Delta-G solvation = 38.375175 kcal Electronic energy + Delta-G solvation = -19877.570070 eV Core-core repulsion = 16652.208976 eV Total energy + Delta-G solvation = -3225.361094 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 285.100 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -42.91016 -40.81344 -36.68295 -35.92059 -35.01222 -33.93167 -33.46746 -30.65020 -29.68912 -27.47723 -26.05804 -24.31457 -24.18761 -22.74203 -20.41963 -19.69454 -18.71112 -18.15638 -17.94444 -17.31845 -17.17696 -16.79264 -16.69822 -16.38309 -15.87795 -15.24109 -14.63833 -14.57921 -14.07846 -13.56555 -13.47402 -13.38174 -13.09316 -13.03020 -12.91555 -12.79899 -12.55745 -12.45043 -12.20697 -11.68558 -11.54326 -11.47741 -10.94628 -10.72230 -10.63225 -9.63858 -9.48643 -8.74951 -8.21772 -6.35906 -0.03829 0.62875 0.94972 1.37890 1.40901 1.52387 1.55224 1.69440 1.83573 2.23797 2.42959 2.89980 3.08470 3.46325 3.72245 3.77570 3.90703 4.41332 4.60400 4.65458 4.74518 4.76931 4.93841 4.99352 5.09696 5.14454 5.23448 5.54181 5.67657 5.80231 6.05940 6.24433 6.60148 6.61045 6.73487 7.19032 7.21569 7.37896 8.85776 Molecular weight = 285.10amu Principal moments of inertia in cm(-1) A = 0.030038 B = 0.003673 C = 0.003517 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 931.920792 B = 7620.529094 C = 7960.473115 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.097 4.097 3 H 0.133 0.867 4 S 0.045 5.955 5 C 0.221 3.779 6 N -0.335 5.335 7 N -0.500 5.500 8 H 0.454 0.546 9 C 0.544 3.456 10 N -0.798 5.798 11 N -0.596 5.596 12 C 0.520 3.480 13 O -0.577 6.577 14 N -0.597 5.597 15 C 0.073 3.927 16 C 0.260 3.740 17 C -0.544 4.544 18 H 0.053 0.947 19 C 0.009 3.991 20 N -0.927 5.927 21 Si 0.966 3.034 22 H -0.268 1.268 23 H -0.268 1.268 24 H -0.282 1.282 25 H 0.088 0.912 26 H 0.060 0.940 27 H 0.090 0.910 28 H 0.431 0.569 29 H 0.432 0.568 30 H 0.079 0.921 31 H 0.073 0.927 32 H 0.087 0.913 33 H 0.032 0.968 34 H 0.002 0.998 35 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.276 13.042 -22.140 27.674 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.230 4.230 3 H 0.150 0.850 4 S 0.272 5.728 5 C -0.171 4.171 6 N -0.172 5.172 7 N -0.227 5.227 8 H 0.303 0.697 9 C 0.174 3.826 10 N -0.358 5.358 11 N -0.339 5.339 12 C 0.306 3.694 13 O -0.458 6.458 14 N -0.328 5.328 15 C -0.069 4.069 16 C 0.139 3.861 17 C -0.582 4.582 18 H 0.071 0.929 19 C -0.190 4.190 20 N -0.567 5.567 21 Si 0.791 3.209 22 H -0.192 1.192 23 H -0.193 1.193 24 H -0.208 1.208 25 H 0.107 0.893 26 H 0.079 0.921 27 H 0.109 0.891 28 H 0.265 0.735 29 H 0.266 0.734 30 H 0.097 0.903 31 H 0.092 0.908 32 H 0.106 0.894 33 H 0.050 0.950 34 H 0.021 0.979 35 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -9.496 11.402 -21.452 26.084 hybrid contribution 0.015 1.475 -0.226 1.492 sum -9.480 12.877 -21.678 26.938 Atomic orbital electron populations 1.21950 0.88346 1.03645 1.05054 1.23552 1.03112 1.03800 0.92518 0.84962 1.86628 1.68470 1.26560 0.91174 1.25765 0.98726 0.96254 0.96310 1.78229 1.26665 1.13127 0.99203 1.47325 1.48741 1.24154 1.02526 0.69678 1.20494 0.88944 0.85924 0.87249 1.41057 1.64806 1.32639 0.97299 1.70653 1.33378 1.28464 1.01442 1.20025 0.78413 0.86393 0.84566 1.90689 1.50071 1.19506 1.85517 1.48031 1.61772 1.14609 1.08366 1.22076 1.00637 0.80291 1.03912 1.18852 0.93626 0.91891 0.81768 1.21729 0.94239 1.32812 1.09456 0.92867 1.25822 1.03565 0.94417 0.95169 1.70047 1.37987 1.34637 1.14009 0.85384 0.79126 0.78019 0.78393 1.19236 1.19312 1.20754 0.89280 0.92078 0.89149 0.73463 0.73379 0.90262 0.90816 0.89433 0.95040 0.97938 0.92352 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.45 8.97 71.98 0.65 -2.80 16 2 C -0.10 -3.17 2.15 29.85 0.06 -3.10 16 3 H 0.13 3.80 6.31 -2.39 -0.02 3.79 16 4 S 0.04 1.57 20.84 -56.49 -1.18 0.39 16 5 C 0.22 6.71 8.03 180.47 1.45 8.16 16 6 N -0.34 -8.52 10.66 -58.58 -0.62 -9.15 16 7 N -0.50 -8.35 7.46 -58.93 -0.44 -8.79 16 8 H 0.45 3.57 8.96 -213.11 -1.91 1.66 16 9 C 0.54 9.88 9.48 260.81 2.47 12.36 16 10 N -0.80 -5.46 9.06 -58.90 -0.53 -5.99 16 11 N -0.60 -16.68 11.25 -198.81 -2.24 -18.92 16 12 C 0.52 22.60 6.85 87.66 0.60 23.20 16 13 O -0.58 -30.93 15.62 -3.05 -0.05 -30.97 16 14 N -0.60 -25.68 2.86 -851.12 -2.43 -28.11 16 15 C 0.07 2.18 9.56 127.77 1.22 3.40 16 16 C 0.26 14.08 5.16 85.63 0.44 14.52 16 17 C -0.54 -31.70 9.39 25.60 0.24 -31.46 16 18 H 0.05 3.09 7.81 -2.91 -0.02 3.07 16 19 C 0.01 0.55 5.46 84.65 0.46 1.01 16 20 N -0.93 -56.35 13.29 21.45 0.28 -56.06 16 21 Si 0.97 45.56 29.54 68.60 2.03 47.59 16 22 H -0.27 -12.33 7.11 99.48 0.71 -11.62 16 23 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 24 H -0.28 -13.20 7.11 99.48 0.71 -12.49 16 25 H 0.09 2.15 6.22 -2.39 -0.01 2.13 16 26 H 0.06 1.74 8.14 -2.39 -0.02 1.72 16 27 H 0.09 2.02 6.94 -2.39 -0.02 2.00 16 28 H 0.43 -0.39 8.95 -92.71 -0.83 -1.22 16 29 H 0.43 2.32 8.95 -92.70 -0.83 1.49 16 30 H 0.08 1.91 7.66 -2.39 -0.02 1.89 16 31 H 0.07 2.28 8.07 -2.38 -0.02 2.26 16 32 H 0.09 2.12 5.94 -2.39 -0.01 2.11 16 33 H 0.03 1.70 8.07 -2.38 -0.02 1.68 16 34 H 0.00 0.16 7.42 -2.39 -0.02 0.14 16 35 H 0.27 15.19 8.31 -92.71 -0.77 14.42 16 Total: -1.00 -82.93 314.72 0.02 -82.91 By element: Atomic # 1 Polarization: 4.24 SS G_CDS: -2.40 Total: 1.84 kcal Atomic # 6 Polarization: 17.67 SS G_CDS: 7.60 Total: 25.27 kcal Atomic # 7 Polarization: -121.04 SS G_CDS: -5.98 Total: -127.03 kcal Atomic # 8 Polarization: -30.93 SS G_CDS: -0.05 Total: -30.97 kcal Atomic # 14 Polarization: 45.56 SS G_CDS: 2.03 Total: 47.59 kcal Atomic # 16 Polarization: 1.57 SS G_CDS: -1.18 Total: 0.39 kcal Total: -82.93 0.02 -82.91 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000052413903.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.281 kcal (2) G-P(sol) polarization free energy of solvation -82.927 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.354 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.021 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.906 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.375 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds