Wall clock time and date at job start Wed Apr 15 2020 11:47:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86802 * 120.00148 * 2 1 4 4 H 1.48504 * 109.47046 * 239.99803 * 3 2 1 5 5 H 1.48497 * 109.47335 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47233 * 120.00159 * 3 2 1 7 7 C 1.38817 * 119.99730 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99852 * 179.97438 * 7 2 1 9 9 N 1.36931 * 120.00109 * 0.02562 * 7 2 1 10 10 C 1.47581 * 134.49311 * 180.02562 * 9 7 2 11 11 C 1.53949 * 86.11625 * 155.35092 * 10 9 7 12 12 O 1.42899 * 113.74212 * 269.15226 * 11 10 9 13 13 C 1.53003 * 113.73733 * 137.95238 * 11 10 9 14 14 N 1.46502 * 109.46950 * 186.92743 * 13 11 10 15 15 C 1.34775 * 120.00324 * 180.02562 * 14 13 11 16 16 O 1.21286 * 119.99711 * 359.97438 * 15 14 13 17 17 C 1.50697 * 120.00215 * 179.97438 * 15 14 13 18 18 H 1.09002 * 115.54932 * 34.41541 * 17 15 14 19 19 C 1.53000 * 117.50034 * 248.74477 * 17 15 14 20 20 C 1.53002 * 117.49992 * 180.08704 * 17 15 14 21 21 H 1.08999 * 117.49664 * 0.02562 * 20 17 15 22 22 N 1.46496 * 117.49702 * 215.00570 * 20 17 15 23 23 O 1.21802 * 120.00138 * 119.99870 * 22 20 17 24 24 O 1.21801 * 119.99960 * 299.99209 * 22 20 17 25 25 C 1.47810 * 134.45573 * 359.85709 * 9 7 2 26 26 H 0.97006 * 119.99441 * 359.97438 * 1 2 3 27 27 H 1.08998 * 113.76990 * 41.04919 * 10 9 7 28 28 H 1.08999 * 113.87159 * 269.66592 * 10 9 7 29 29 H 0.96699 * 113.99991 * 178.07858 * 12 11 10 30 30 H 1.08994 * 109.47298 * 66.92862 * 13 11 10 31 31 H 1.09000 * 109.47221 * 306.92298 * 13 11 10 32 32 H 0.97007 * 119.99935 * 359.97438 * 14 13 11 33 33 H 1.09008 * 117.49673 * 359.97438 * 19 17 15 34 34 H 1.08999 * 117.49942 * 144.97208 * 19 17 15 35 35 H 1.09005 * 113.77063 * 90.38593 * 25 9 7 36 36 H 1.09002 * 113.83787 * 318.92753 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1040 1.6963 -1.2125 5 1 1.2853 2.7465 -0.0006 6 1 3.1040 1.6964 1.2124 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0001 9 7 1.3255 -2.3881 0.0005 10 6 1.7200 -3.8102 0.0015 11 6 0.3465 -4.0826 0.6411 12 8 0.3619 -4.0570 2.0698 13 6 -0.3637 -5.3135 0.0742 14 7 -1.7197 -5.3911 0.6234 15 6 -2.5360 -6.4012 0.2630 16 8 -2.1481 -7.2457 -0.5162 17 6 -3.9306 -6.4812 0.8284 18 1 -4.4213 -5.5244 1.0064 19 6 -4.2342 -7.6227 1.8009 20 6 -4.8077 -7.6528 0.3820 21 1 -4.3758 -8.3658 -0.3202 22 7 -6.2427 -7.4025 0.2266 23 8 -6.7762 -7.5690 -0.8556 24 8 -6.9023 -7.0281 1.1796 25 6 -0.1058 -2.7570 0.0027 26 1 -0.4849 0.8401 0.0004 27 1 2.5619 -4.0321 0.6573 28 1 1.8331 -4.2372 -0.9950 29 1 -0.5046 -4.1985 2.4751 30 1 0.1909 -6.2111 0.3477 31 1 -0.4155 -5.2352 -1.0117 32 1 -2.0298 -4.7158 1.2469 33 1 -3.4252 -8.3160 2.0315 34 1 -4.9243 -7.4166 2.6191 35 1 -0.5313 -2.8722 -0.9942 36 1 -0.7188 -2.1398 0.6595 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754767140.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:47:06 Heat of formation + Delta-G solvation = 0.479428 kcal Electronic energy + Delta-G solvation = -22215.163695 eV Core-core repulsion = 18513.113696 eV Total energy + Delta-G solvation = -3702.049999 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 285.120 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -42.61242 -40.45984 -38.99301 -37.22772 -36.52787 -35.09330 -34.29038 -32.07861 -29.22445 -28.07850 -26.45139 -25.16285 -24.33061 -22.60222 -21.94885 -20.81929 -19.54346 -19.37752 -18.74455 -18.21615 -17.41558 -16.82741 -16.33007 -15.93512 -15.65119 -15.04560 -14.56562 -14.22282 -13.94618 -13.71576 -13.26193 -13.19824 -12.84123 -12.38574 -12.06801 -11.96744 -11.78661 -11.77653 -11.36545 -11.33780 -11.15721 -11.01229 -10.82605 -10.63180 -10.38873 -9.91320 -9.62828 -9.47911 -9.19663 -8.90280 -6.99656 -5.85377 -3.17436 0.11668 1.18346 1.87825 2.60782 2.78332 3.31220 3.35797 3.39741 3.40819 3.64556 4.01336 4.26217 4.35191 4.37605 4.64645 4.82785 4.90134 5.00323 5.06342 5.12785 5.47189 5.54308 5.80650 6.00115 6.05209 6.21608 6.36737 6.43181 6.87750 7.03985 7.07092 7.30067 7.39523 7.74201 7.87238 7.98397 8.95237 9.62020 10.46278 11.32021 Molecular weight = 285.12amu Principal moments of inertia in cm(-1) A = 0.027315 B = 0.003210 C = 0.003029 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1024.847893 B = 8721.396882 C = 9241.554810 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.924 5.924 2 C -0.007 4.007 3 Si 0.915 3.085 4 H -0.285 1.285 5 H -0.289 1.289 6 H -0.283 1.283 7 C -0.222 4.222 8 H 0.081 0.919 9 N -0.601 5.601 10 C 0.137 3.863 11 C 0.062 3.938 12 O -0.525 6.525 13 C 0.101 3.899 14 N -0.709 5.709 15 C 0.544 3.456 16 O -0.533 6.533 17 C -0.146 4.146 18 H 0.149 0.851 19 C -0.106 4.106 20 C -0.062 4.062 21 H 0.186 0.814 22 N 0.011 4.989 23 O -0.151 6.151 24 O -0.161 6.161 25 C 0.143 3.857 26 H 0.254 0.746 27 H 0.056 0.944 28 H 0.051 0.949 29 H 0.362 0.638 30 H 0.075 0.925 31 H 0.083 0.917 32 H 0.404 0.596 33 H 0.135 0.865 34 H 0.140 0.860 35 H 0.034 0.966 36 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.358 -15.092 4.632 17.863 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.203 4.203 3 Si 0.745 3.255 4 H -0.211 1.211 5 H -0.215 1.215 6 H -0.210 1.210 7 C -0.349 4.349 8 H 0.099 0.901 9 N -0.327 5.327 10 C 0.010 3.990 11 C 0.020 3.980 12 O -0.328 6.328 13 C -0.023 4.023 14 N -0.360 5.360 15 C 0.328 3.672 16 O -0.410 6.410 17 C -0.168 4.168 18 H 0.167 0.833 19 C -0.144 4.144 20 C -0.162 4.162 21 H 0.203 0.797 22 N 0.533 4.467 23 O -0.370 6.370 24 O -0.379 6.379 25 C 0.017 3.983 26 H 0.064 0.936 27 H 0.074 0.926 28 H 0.068 0.932 29 H 0.207 0.793 30 H 0.093 0.907 31 H 0.102 0.898 32 H 0.239 0.761 33 H 0.153 0.847 34 H 0.158 0.842 35 H 0.052 0.948 36 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -6.603 -15.328 4.046 17.173 hybrid contribution -0.630 1.256 0.047 1.406 sum -7.233 -14.072 4.094 16.343 Atomic orbital electron populations 1.69778 1.05079 1.25567 1.56660 1.24770 0.95717 0.97589 1.02224 0.86157 0.78482 0.82874 0.77992 1.21124 1.21502 1.20992 1.18957 0.90295 0.81682 1.44007 0.90093 1.45674 1.01828 0.99146 1.86049 1.22541 0.93195 0.86708 0.96523 1.23807 0.99374 0.93140 0.81714 1.86644 1.33500 1.95151 1.17521 1.22195 0.80475 0.99871 0.99727 1.45791 1.15059 1.27412 1.47743 1.19070 0.84815 0.81944 0.81389 1.90766 1.75729 1.39852 1.34628 1.22817 0.94905 0.96337 1.02745 0.83347 1.23689 1.02419 0.98042 0.90238 1.25016 0.78369 1.06598 1.06224 0.79688 1.43792 1.04468 0.98110 1.00376 1.94599 1.74069 1.54584 1.13791 1.94549 1.64211 1.47423 1.31681 1.22944 0.89079 0.89015 0.97221 0.93559 0.92554 0.93196 0.79266 0.90681 0.89846 0.76068 0.84701 0.84165 0.94786 0.90311 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 36. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.66 11.39 55.49 0.63 -26.03 16 2 C -0.01 -0.18 5.50 -17.43 -0.10 -0.28 16 3 Si 0.91 21.86 29.55 -169.99 -5.02 16.84 16 4 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 5 H -0.29 -6.95 7.11 56.52 0.40 -6.54 16 6 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 7 C -0.22 -6.15 10.70 -15.06 -0.16 -6.32 16 8 H 0.08 2.16 7.83 -52.48 -0.41 1.75 16 9 N -0.60 -14.95 3.70 -177.60 -0.66 -15.61 16 10 C 0.14 2.67 8.34 -2.96 -0.02 2.65 16 11 C 0.06 1.04 1.49 -89.70 -0.13 0.91 16 12 O -0.52 -8.69 13.50 -35.23 -0.48 -9.17 16 13 C 0.10 1.34 5.26 -4.04 -0.02 1.32 16 14 N -0.71 -7.44 5.33 -60.29 -0.32 -7.76 16 15 C 0.54 5.82 7.61 -10.99 -0.08 5.74 16 16 O -0.53 -7.54 16.26 5.55 0.09 -7.45 16 17 C -0.15 -1.11 6.08 -91.77 -0.56 -1.67 16 18 H 0.15 0.96 8.14 -51.93 -0.42 0.54 16 19 C -0.11 -0.58 9.72 -26.70 -0.26 -0.84 16 20 C -0.06 -0.52 6.43 -67.90 -0.44 -0.96 16 21 H 0.19 1.56 7.67 -51.93 -0.40 1.16 16 22 N 0.01 0.12 4.33 -4.86 -0.02 0.09 16 23 O -0.15 -1.94 19.24 -29.46 -0.57 -2.51 16 24 O -0.16 -1.82 18.28 -29.46 -0.54 -2.36 16 25 C 0.14 3.09 6.92 -2.85 -0.02 3.07 16 26 H 0.25 7.15 8.31 -40.82 -0.34 6.82 16 27 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 28 H 0.05 0.89 8.10 -51.93 -0.42 0.47 16 29 H 0.36 4.21 7.73 45.56 0.35 4.56 16 30 H 0.07 0.97 8.14 -51.93 -0.42 0.54 16 31 H 0.08 1.19 8.09 -51.93 -0.42 0.77 16 32 H 0.40 3.42 7.42 -40.82 -0.30 3.12 16 33 H 0.13 0.57 8.14 -51.92 -0.42 0.14 16 34 H 0.14 0.59 7.63 -51.93 -0.40 0.19 16 35 H 0.03 0.75 8.06 -51.93 -0.42 0.33 16 36 H 0.08 1.88 7.16 -51.93 -0.37 1.51 16 LS Contribution 321.53 15.07 4.85 4.85 Total: -1.00 -34.61 321.53 -7.44 -42.06 By element: Atomic # 1 Polarization: 7.05 SS G_CDS: -3.61 Total: 3.44 kcal Atomic # 6 Polarization: 5.41 SS G_CDS: -1.79 Total: 3.62 kcal Atomic # 7 Polarization: -48.94 SS G_CDS: -0.37 Total: -49.30 kcal Atomic # 8 Polarization: -20.00 SS G_CDS: -1.49 Total: -21.49 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -5.02 Total: 16.84 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -34.61 -7.44 -42.06 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754767140.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.535 kcal (2) G-P(sol) polarization free energy of solvation -34.611 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.923 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.444 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.055 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.479 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds