Wall clock time and date at job start Wed Apr 15 2020 11:47:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86802 * 120.00148 * 2 1 4 4 H 1.48504 * 109.47046 * 239.99803 * 3 2 1 5 5 H 1.48497 * 109.47335 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47233 * 120.00159 * 3 2 1 7 7 C 1.38817 * 119.99730 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99852 * 179.97438 * 7 2 1 9 9 N 1.36931 * 120.00109 * 0.02562 * 7 2 1 10 10 C 1.47581 * 134.49311 * 180.02562 * 9 7 2 11 11 C 1.53949 * 86.11625 * 155.35092 * 10 9 7 12 12 O 1.42899 * 113.74212 * 269.15226 * 11 10 9 13 13 C 1.53003 * 113.73733 * 137.95238 * 11 10 9 14 14 N 1.46502 * 109.46950 * 186.92743 * 13 11 10 15 15 C 1.34775 * 120.00324 * 180.02562 * 14 13 11 16 16 O 1.21286 * 119.99711 * 359.97438 * 15 14 13 17 17 C 1.50697 * 120.00215 * 179.97438 * 15 14 13 18 18 H 1.09002 * 115.54932 * 34.41541 * 17 15 14 19 19 C 1.53000 * 117.50034 * 248.74477 * 17 15 14 20 20 C 1.53002 * 117.49992 * 180.08704 * 17 15 14 21 21 H 1.08999 * 117.49664 * 0.02562 * 20 17 15 22 22 N 1.46496 * 117.49702 * 215.00570 * 20 17 15 23 23 O 1.21802 * 120.00138 * 119.99870 * 22 20 17 24 24 O 1.21801 * 119.99960 * 299.99209 * 22 20 17 25 25 C 1.47810 * 134.45573 * 359.85709 * 9 7 2 26 26 H 0.97006 * 119.99441 * 359.97438 * 1 2 3 27 27 H 1.08998 * 113.76990 * 41.04919 * 10 9 7 28 28 H 1.08999 * 113.87159 * 269.66592 * 10 9 7 29 29 H 0.96699 * 113.99991 * 178.07858 * 12 11 10 30 30 H 1.08994 * 109.47298 * 66.92862 * 13 11 10 31 31 H 1.09000 * 109.47221 * 306.92298 * 13 11 10 32 32 H 0.97007 * 119.99935 * 359.97438 * 14 13 11 33 33 H 1.09008 * 117.49673 * 359.97438 * 19 17 15 34 34 H 1.08999 * 117.49942 * 144.97208 * 19 17 15 35 35 H 1.09005 * 113.77063 * 90.38593 * 25 9 7 36 36 H 1.09002 * 113.83787 * 318.92753 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1040 1.6963 -1.2125 5 1 1.2853 2.7465 -0.0006 6 1 3.1040 1.6964 1.2124 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0001 9 7 1.3255 -2.3881 0.0005 10 6 1.7200 -3.8102 0.0015 11 6 0.3465 -4.0826 0.6411 12 8 0.3619 -4.0570 2.0698 13 6 -0.3637 -5.3135 0.0742 14 7 -1.7197 -5.3911 0.6234 15 6 -2.5360 -6.4012 0.2630 16 8 -2.1481 -7.2457 -0.5162 17 6 -3.9306 -6.4812 0.8284 18 1 -4.4213 -5.5244 1.0064 19 6 -4.2342 -7.6227 1.8009 20 6 -4.8077 -7.6528 0.3820 21 1 -4.3758 -8.3658 -0.3202 22 7 -6.2427 -7.4025 0.2266 23 8 -6.7762 -7.5690 -0.8556 24 8 -6.9023 -7.0281 1.1796 25 6 -0.1058 -2.7570 0.0027 26 1 -0.4849 0.8401 0.0004 27 1 2.5619 -4.0321 0.6573 28 1 1.8331 -4.2372 -0.9950 29 1 -0.5046 -4.1985 2.4751 30 1 0.1909 -6.2111 0.3477 31 1 -0.4155 -5.2352 -1.0117 32 1 -2.0298 -4.7158 1.2469 33 1 -3.4252 -8.3160 2.0315 34 1 -4.9243 -7.4166 2.6191 35 1 -0.5313 -2.8722 -0.9942 36 1 -0.7188 -2.1398 0.6595 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754767140.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:47:05 Heat of formation + Delta-G solvation = -26.781249 kcal Electronic energy + Delta-G solvation = -22216.345806 eV Core-core repulsion = 18513.113696 eV Total energy + Delta-G solvation = -3703.232110 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 285.120 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -43.41294 -41.42821 -40.36005 -38.00883 -37.35938 -36.51213 -35.42201 -34.02960 -30.56828 -29.11313 -27.90126 -26.78478 -25.30516 -23.60078 -23.25523 -21.67935 -20.98080 -20.18532 -19.51282 -19.20516 -18.69493 -18.20233 -17.39591 -17.25786 -16.64890 -16.53715 -15.82662 -15.74306 -15.10234 -14.99940 -14.50489 -14.41164 -13.91029 -13.77260 -13.45314 -12.98747 -12.82192 -12.77190 -12.61644 -12.57134 -12.44191 -12.28721 -12.26777 -12.10711 -11.80975 -11.51795 -11.17334 -10.98327 -10.75436 -10.31048 -8.95561 -7.93568 -5.25770 -0.75665 0.44785 1.11352 1.44745 1.47580 1.53577 1.78654 2.11509 2.45041 2.65517 3.03378 3.08885 3.24580 3.30092 3.35752 3.55538 3.64520 3.85288 4.09114 4.32405 4.49891 4.58543 4.66953 4.71190 4.75993 4.93328 5.13028 5.15045 5.16630 5.30737 5.47313 5.90267 6.22737 6.39416 6.81286 6.89447 6.93205 7.57487 8.50053 9.22899 Molecular weight = 285.12amu Principal moments of inertia in cm(-1) A = 0.027315 B = 0.003210 C = 0.003029 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1024.847893 B = 8721.396882 C = 9241.554810 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.951 5.951 2 C -0.064 4.064 3 Si 0.978 3.022 4 H -0.278 1.278 5 H -0.293 1.293 6 H -0.277 1.277 7 C -0.237 4.237 8 H 0.081 0.919 9 N -0.637 5.637 10 C 0.129 3.871 11 C 0.101 3.899 12 O -0.539 6.539 13 C 0.118 3.882 14 N -0.703 5.703 15 C 0.548 3.452 16 O -0.568 6.568 17 C -0.144 4.144 18 H 0.165 0.835 19 C -0.071 4.071 20 C -0.079 4.079 21 H 0.182 0.818 22 N 0.015 4.985 23 O -0.209 6.209 24 O -0.142 6.142 25 C 0.141 3.859 26 H 0.249 0.751 27 H 0.058 0.942 28 H 0.072 0.928 29 H 0.385 0.615 30 H 0.089 0.911 31 H 0.075 0.925 32 H 0.416 0.584 33 H 0.154 0.846 34 H 0.162 0.838 35 H 0.025 0.975 36 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.144 -16.031 6.179 19.013 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.600 5.600 2 C -0.257 4.257 3 Si 0.806 3.194 4 H -0.205 1.205 5 H -0.219 1.219 6 H -0.203 1.203 7 C -0.365 4.365 8 H 0.099 0.901 9 N -0.363 5.363 10 C 0.003 3.997 11 C 0.058 3.942 12 O -0.346 6.346 13 C -0.007 4.007 14 N -0.355 5.355 15 C 0.333 3.667 16 O -0.448 6.448 17 C -0.166 4.166 18 H 0.182 0.818 19 C -0.108 4.108 20 C -0.179 4.179 21 H 0.199 0.801 22 N 0.534 4.466 23 O -0.416 6.416 24 O -0.368 6.368 25 C 0.015 3.985 26 H 0.058 0.942 27 H 0.076 0.924 28 H 0.089 0.911 29 H 0.234 0.766 30 H 0.107 0.893 31 H 0.093 0.907 32 H 0.253 0.747 33 H 0.172 0.828 34 H 0.180 0.820 35 H 0.043 0.957 36 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -6.406 -16.321 5.510 18.379 hybrid contribution -0.653 1.514 -0.324 1.680 sum -7.059 -14.808 5.186 17.205 Atomic orbital electron populations 1.69953 1.06276 1.25689 1.58109 1.25571 0.96631 1.00696 1.02822 0.85163 0.77213 0.78816 0.78193 1.20453 1.21878 1.20313 1.19342 0.90818 0.83349 1.42969 0.90075 1.46079 1.03532 1.00391 1.86298 1.22799 0.94867 0.84057 0.97957 1.23102 0.97233 0.92150 0.81738 1.86593 1.35695 1.95140 1.17141 1.21822 0.81727 0.98181 0.98996 1.45650 1.14130 1.27870 1.47803 1.19432 0.85652 0.81007 0.80576 1.90762 1.76650 1.41159 1.36187 1.22780 0.92698 0.97492 1.03615 0.81800 1.23998 1.02059 0.95999 0.88759 1.25147 0.76646 1.07248 1.08859 0.80124 1.44114 1.05371 0.97296 0.99821 1.94615 1.75095 1.57391 1.14541 1.94510 1.64987 1.45955 1.31376 1.22908 0.87480 0.91440 0.96687 0.94236 0.92352 0.91058 0.76615 0.89278 0.90690 0.74706 0.82773 0.82003 0.95680 0.93097 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 30. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -55.93 11.39 21.65 0.25 -55.68 16 2 C -0.06 -3.61 5.50 84.86 0.47 -3.14 16 3 Si 0.98 45.28 29.55 68.60 2.03 47.31 16 4 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16 5 H -0.29 -13.58 7.11 99.48 0.71 -12.87 16 6 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16 7 C -0.24 -13.20 10.70 84.04 0.90 -12.30 16 8 H 0.08 4.35 7.83 -2.91 -0.02 4.33 16 9 N -0.64 -31.74 3.70 -719.62 -2.67 -34.41 16 10 C 0.13 4.87 8.34 86.49 0.72 5.59 16 11 C 0.10 3.22 1.49 -10.14 -0.02 3.20 16 12 O -0.54 -16.71 13.50 -148.98 -2.01 -18.72 16 13 C 0.12 2.85 5.26 86.38 0.45 3.31 16 14 N -0.70 -13.04 5.33 -463.06 -2.47 -15.51 16 15 C 0.55 10.45 7.61 87.66 0.67 11.12 16 16 O -0.57 -15.16 16.26 -3.05 -0.05 -15.21 16 17 C -0.14 -1.80 6.08 -11.54 -0.07 -1.87 16 18 H 0.16 1.60 8.14 -2.39 -0.02 1.58 16 19 C -0.07 -0.49 9.72 30.62 0.30 -0.20 16 20 C -0.08 -1.18 6.43 45.02 0.29 -0.89 16 21 H 0.18 2.89 7.67 -2.39 -0.02 2.87 16 22 N 0.02 0.32 4.33 -169.30 -0.73 -0.41 16 23 O -0.21 -5.53 19.24 18.88 0.36 -5.16 16 24 O -0.14 -2.91 18.28 18.88 0.35 -2.56 16 25 C 0.14 6.09 6.92 86.43 0.60 6.69 16 26 H 0.25 14.27 8.31 -92.70 -0.77 13.49 16 27 H 0.06 2.18 8.14 -2.39 -0.02 2.16 16 28 H 0.07 2.42 8.10 -2.39 -0.02 2.40 16 29 H 0.38 7.88 7.73 -74.06 -0.57 7.31 16 30 H 0.09 2.01 8.14 -2.39 -0.02 2.00 16 31 H 0.07 2.01 8.09 -2.39 -0.02 1.99 16 32 H 0.42 5.92 7.42 -92.70 -0.69 5.23 16 33 H 0.15 0.59 8.14 -2.38 -0.02 0.57 16 34 H 0.16 0.55 7.63 -2.39 -0.02 0.53 16 35 H 0.03 1.13 8.06 -2.38 -0.02 1.11 16 36 H 0.05 2.47 7.16 -2.39 -0.02 2.46 16 Total: -1.00 -76.39 321.53 -0.76 -77.15 By element: Atomic # 1 Polarization: 11.82 SS G_CDS: -0.12 Total: 11.70 kcal Atomic # 6 Polarization: 7.20 SS G_CDS: 4.31 Total: 11.51 kcal Atomic # 7 Polarization: -100.39 SS G_CDS: -5.62 Total: -106.01 kcal Atomic # 8 Polarization: -40.31 SS G_CDS: -1.35 Total: -41.66 kcal Atomic # 14 Polarization: 45.28 SS G_CDS: 2.03 Total: 47.31 kcal Total: -76.39 -0.76 -77.15 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754767140.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.372 kcal (2) G-P(sol) polarization free energy of solvation -76.393 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.022 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.760 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.153 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.781 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds