Wall clock time and date at job start Wed Apr 15 2020 11:47:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09004 * 109.46930 * 2 1 4 4 S 1.81000 * 109.46989 * 119.99794 * 2 1 3 5 5 C 1.76198 * 100.00190 * 294.99952 * 4 2 1 6 6 N 1.31544 * 126.45361 * 0.02980 * 5 4 2 7 7 N 1.28414 * 110.50349 * 179.97438 * 6 5 4 8 8 N 1.28907 * 110.34020 * 359.97438 * 7 6 5 9 9 N 1.35396 * 126.45280 * 179.70974 * 5 4 2 10 10 C 1.46501 * 127.38089 * 359.97438 * 9 5 4 11 11 C 1.50698 * 109.46976 * 239.99902 * 2 1 3 12 12 O 1.21276 * 120.00049 * 264.99668 * 11 2 1 13 13 N 1.34777 * 119.99873 * 85.00264 * 11 2 1 14 14 C 1.46501 * 120.00259 * 359.97438 * 13 11 2 15 15 C 1.46499 * 120.00154 * 179.97438 * 13 11 2 16 16 C 1.50704 * 109.47225 * 89.99713 * 15 13 11 17 17 H 1.07994 * 119.99632 * 0.02562 * 16 15 13 18 18 C 1.37875 * 119.99937 * 180.02562 * 16 15 13 19 19 N 1.31518 * 119.99899 * 359.97438 * 18 16 15 20 20 Si 1.86796 * 120.00103 * 179.97438 * 18 16 15 21 21 H 1.48501 * 109.46879 * 89.99785 * 20 18 16 22 22 H 1.48493 * 109.47477 * 210.00019 * 20 18 16 23 23 H 1.48503 * 109.46923 * 330.00462 * 20 18 16 24 24 H 1.09002 * 109.47067 * 60.00083 * 1 2 3 25 25 H 1.09004 * 109.46930 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.47312 * 300.00056 * 1 2 3 27 27 H 1.08998 * 109.46994 * 89.99797 * 10 9 5 28 28 H 1.08999 * 109.46550 * 209.99392 * 10 9 5 29 29 H 1.08999 * 109.47349 * 329.98964 * 10 9 5 30 30 H 1.09000 * 109.47497 * 90.00042 * 14 13 11 31 31 H 1.08999 * 109.47519 * 210.00421 * 14 13 11 32 32 H 1.09006 * 109.46999 * 330.00392 * 14 13 11 33 33 H 1.09003 * 109.47094 * 210.00166 * 15 13 11 34 34 H 1.08998 * 109.47179 * 329.99434 * 15 13 11 35 35 H 0.97002 * 119.99872 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 16 2.1333 -0.8532 1.4779 5 6 1.5439 0.2423 2.7257 6 7 0.8615 1.3505 2.5342 7 7 0.5884 1.9103 3.6571 8 7 1.0661 1.2154 4.6321 9 7 1.7030 0.0990 4.0626 10 6 2.3921 -0.9864 4.7650 11 6 2.0323 -0.7104 -1.2304 12 8 2.3208 -1.8871 -1.1760 13 7 2.1611 -0.0381 -2.3914 14 6 1.8122 1.3833 -2.4574 15 6 2.6499 -0.7285 -3.5875 16 6 1.4832 -1.3089 -4.3445 17 1 0.4782 -1.1763 -3.9722 18 6 1.6990 -2.0092 -5.5125 19 7 2.9229 -2.1701 -5.9661 20 14 0.2530 -2.7292 -6.4505 21 1 -0.2457 -1.7328 -7.4322 22 1 0.6886 -3.9548 -7.1670 23 1 -0.8334 -3.0723 -5.4980 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8900 27 1 3.4434 -0.7277 4.8911 28 1 1.9345 -1.1342 5.7432 29 1 2.3110 -1.9047 4.1835 30 1 2.6907 1.9844 -2.2228 31 1 1.4636 1.6257 -3.4613 32 1 1.0226 1.5974 -1.7370 33 1 3.1804 -0.0206 -4.2243 34 1 3.3270 -1.5302 -3.2929 35 1 3.0748 -2.6631 -6.7876 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000072847194.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:47:11 Heat of formation + Delta-G solvation = 91.322484 kcal Electronic energy + Delta-G solvation = -20122.802900 eV Core-core repulsion = 16899.737774 eV Total energy + Delta-G solvation = -3223.065126 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 285.100 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -43.01183 -39.31781 -35.38846 -35.03983 -33.55141 -32.54736 -31.94763 -28.54884 -27.89039 -26.11502 -24.50217 -23.84325 -23.27059 -22.49643 -19.17358 -17.98103 -17.01614 -16.90201 -16.74316 -16.60714 -15.58245 -14.88344 -14.69173 -14.27874 -14.10114 -14.08006 -13.52984 -13.12416 -13.00616 -12.44443 -12.28399 -12.20733 -12.06433 -11.96893 -11.80836 -11.28711 -11.20018 -11.12132 -10.96192 -10.67867 -10.63249 -10.52798 -10.22600 -9.72004 -9.20484 -8.49955 -8.15691 -7.82538 -6.11141 -4.16395 0.54223 0.68515 1.63348 1.89404 2.03918 3.10271 3.26829 3.33861 3.38213 3.72388 3.95825 4.38632 4.54233 4.62122 4.72936 4.85116 4.91525 5.06179 5.13599 5.17770 5.23915 5.51679 5.70388 5.74312 5.78657 5.83858 6.10672 6.23677 6.87818 7.30043 7.37325 7.83986 8.13209 8.17060 8.22739 8.69043 8.89688 9.48949 10.97054 Molecular weight = 285.10amu Principal moments of inertia in cm(-1) A = 0.034770 B = 0.003774 C = 0.003684 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 805.093595 B = 7417.544143 C = 7597.580797 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.112 4.112 3 H 0.124 0.876 4 S 0.104 5.896 5 C 0.206 3.794 6 N -0.335 5.335 7 N -0.034 5.034 8 N -0.090 5.090 9 N -0.368 5.368 10 C 0.086 3.914 11 C 0.526 3.474 12 O -0.528 6.528 13 N -0.588 5.588 14 C 0.073 3.927 15 C 0.245 3.755 16 C -0.530 4.530 17 H 0.059 0.941 18 C 0.062 3.938 19 N -0.894 5.894 20 Si 0.899 3.101 21 H -0.280 1.280 22 H -0.285 1.285 23 H -0.274 1.274 24 H 0.079 0.921 25 H 0.072 0.928 26 H 0.082 0.918 27 H 0.094 0.906 28 H 0.105 0.895 29 H 0.103 0.897 30 H 0.049 0.951 31 H 0.080 0.920 32 H 0.063 0.937 33 H 0.037 0.963 34 H 0.046 0.954 35 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.718 4.578 17.384 17.991 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.245 4.245 3 H 0.142 0.858 4 S 0.330 5.670 5 C -0.178 4.178 6 N -0.192 5.192 7 N -0.030 5.030 8 N -0.077 5.077 9 N -0.167 5.167 10 C -0.056 4.056 11 C 0.309 3.691 12 O -0.405 6.405 13 N -0.319 5.319 14 C -0.071 4.071 15 C 0.127 3.873 16 C -0.568 4.568 17 H 0.077 0.923 18 C -0.140 4.140 19 N -0.532 5.532 20 Si 0.726 3.274 21 H -0.206 1.206 22 H -0.210 1.210 23 H -0.198 1.198 24 H 0.098 0.902 25 H 0.091 0.909 26 H 0.100 0.900 27 H 0.113 0.887 28 H 0.123 0.877 29 H 0.122 0.878 30 H 0.068 0.932 31 H 0.099 0.901 32 H 0.082 0.918 33 H 0.055 0.945 34 H 0.064 0.936 35 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -0.489 4.027 17.799 18.255 hybrid contribution -0.936 0.030 -0.753 1.202 sum -1.425 4.056 17.046 17.580 Atomic orbital electron populations 1.22051 0.89680 1.04146 1.04481 1.23854 1.02571 1.04128 0.93920 0.85826 1.86397 1.65603 1.23054 0.91990 1.28271 0.99666 0.99779 0.90087 1.74928 1.18670 1.06422 1.19194 1.77829 1.12697 1.19397 0.93038 1.82442 1.12660 0.94023 1.18621 1.51434 1.40984 1.20327 1.03930 1.22279 0.97753 0.86447 0.99083 1.19254 0.79505 0.86965 0.83416 1.90723 1.50374 1.15017 1.84397 1.48071 1.63190 1.10087 1.10554 1.21833 0.99668 0.81913 1.03644 1.19398 0.95421 0.92853 0.79666 1.21402 0.93368 1.34768 1.07295 0.92299 1.24930 0.95979 0.95841 0.97259 1.69928 1.19631 1.41385 1.22294 0.86481 0.82422 0.78681 0.79767 1.20585 1.21046 1.19836 0.90206 0.90880 0.89955 0.88713 0.87658 0.87835 0.93223 0.90150 0.91848 0.94527 0.93587 0.92615 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.96 8.77 37.16 0.33 -1.64 16 2 C -0.11 -1.63 1.85 -27.88 -0.05 -1.68 16 3 H 0.12 1.62 6.92 -51.91 -0.36 1.26 16 4 S 0.10 1.36 20.54 -107.50 -2.21 -0.85 16 5 C 0.21 2.63 7.84 -89.18 -0.70 1.93 16 6 N -0.34 -4.84 9.71 30.50 0.30 -4.55 16 7 N -0.03 -0.50 13.38 60.35 0.81 0.30 16 8 N -0.09 -1.20 13.93 60.35 0.84 -0.36 16 9 N -0.37 -4.08 4.09 -68.10 -0.28 -4.36 16 10 C 0.09 0.51 11.40 59.85 0.68 1.19 16 11 C 0.53 10.20 6.79 -10.99 -0.07 10.12 16 12 O -0.53 -12.29 15.72 5.56 0.09 -12.20 16 13 N -0.59 -11.75 2.86 -182.95 -0.52 -12.27 16 14 C 0.07 1.10 9.87 59.85 0.59 1.69 16 15 C 0.25 6.13 5.16 -5.19 -0.03 6.10 16 16 C -0.53 -14.46 9.39 -34.44 -0.32 -14.79 16 17 H 0.06 1.60 7.81 -52.49 -0.41 1.19 16 18 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 19 N -0.89 -25.84 13.29 55.43 0.74 -25.10 16 20 Si 0.90 21.31 29.54 -169.99 -5.02 16.29 16 21 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 22 H -0.28 -6.72 7.11 56.52 0.40 -6.31 16 23 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 24 H 0.08 1.04 6.84 -51.93 -0.36 0.69 16 25 H 0.07 1.04 8.14 -51.93 -0.42 0.61 16 26 H 0.08 1.07 5.91 -51.93 -0.31 0.77 16 27 H 0.09 0.40 8.14 -51.93 -0.42 -0.02 16 28 H 0.10 0.42 8.14 -51.93 -0.42 0.00 16 29 H 0.10 0.49 7.85 -51.93 -0.41 0.09 16 30 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 31 H 0.08 1.23 8.07 -51.93 -0.42 0.81 16 32 H 0.06 0.79 5.17 -51.93 -0.27 0.53 16 33 H 0.04 0.92 8.07 -51.93 -0.42 0.50 16 34 H 0.05 1.29 7.42 -51.93 -0.39 0.91 16 35 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 LS Contribution 315.83 15.07 4.76 4.76 Total: -1.00 -33.46 315.83 -4.33 -37.80 By element: Atomic # 1 Polarization: 0.15 SS G_CDS: -4.16 Total: -4.01 kcal Atomic # 6 Polarization: 4.23 SS G_CDS: 0.33 Total: 4.56 kcal Atomic # 7 Polarization: -48.22 SS G_CDS: 1.88 Total: -46.34 kcal Atomic # 8 Polarization: -12.29 SS G_CDS: 0.09 Total: -12.20 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -5.02 Total: 16.29 kcal Atomic # 16 Polarization: 1.36 SS G_CDS: -2.21 Total: -0.85 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -33.46 -4.33 -37.80 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000072847194.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.120 kcal (2) G-P(sol) polarization free energy of solvation -33.464 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 95.656 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.334 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.798 kcal (6) G-S(sol) free energy of system = (1) + (5) 91.322 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds