Wall clock time and date at job start Wed Apr 15 2020 11:47:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52997 * 109.47005 * 2 1 4 4 C 1.53002 * 109.46893 * 239.99619 * 2 1 3 5 5 N 1.46501 * 109.46788 * 119.99796 * 2 1 3 6 6 N 1.40579 * 127.38629 * 0.02562 * 5 2 1 7 7 N 1.28904 * 106.83248 * 179.97438 * 6 5 2 8 8 N 1.28422 * 110.34263 * 359.97438 * 7 6 5 9 9 C 1.31539 * 110.49813 * 0.02562 * 8 7 6 10 10 S 1.76205 * 126.45097 * 179.97438 * 9 8 7 11 11 C 1.80996 * 100.00109 * 0.02562 * 10 9 8 12 12 C 1.50698 * 109.47130 * 179.97438 * 11 10 9 13 13 O 1.21293 * 120.00083 * 0.02562 * 12 11 10 14 14 N 1.34775 * 119.99877 * 180.02562 * 12 11 10 15 15 C 1.37098 * 120.00199 * 180.02562 * 14 12 11 16 16 H 1.08005 * 119.99449 * 359.97438 * 15 14 12 17 17 C 1.38945 * 120.00422 * 180.02562 * 15 14 12 18 18 N 1.31412 * 119.99813 * 359.97438 * 17 15 14 19 19 Si 1.86803 * 120.00235 * 179.97438 * 17 15 14 20 20 H 1.48502 * 109.46925 * 359.97438 * 19 17 15 21 21 H 1.48503 * 109.47268 * 119.99232 * 19 17 15 22 22 H 1.48497 * 109.47272 * 239.99908 * 19 17 15 23 23 H 1.08999 * 109.47210 * 300.00366 * 1 2 3 24 24 H 1.08998 * 109.47238 * 59.99786 * 1 2 3 25 25 H 1.08994 * 109.47281 * 180.02562 * 1 2 3 26 26 H 1.08997 * 109.46963 * 180.02562 * 3 2 1 27 27 H 1.09001 * 109.47081 * 299.99449 * 3 2 1 28 28 H 1.08999 * 109.47435 * 59.99772 * 3 2 1 29 29 H 1.08994 * 109.47275 * 300.00148 * 4 2 1 30 30 H 1.08998 * 109.46694 * 60.00261 * 4 2 1 31 31 H 1.08997 * 109.47156 * 179.97438 * 4 2 1 32 32 H 1.09003 * 109.47379 * 300.00465 * 11 10 9 33 33 H 1.09008 * 109.47144 * 60.00236 * 11 10 9 34 34 H 0.97001 * 120.00303 * 359.97438 * 14 12 11 35 35 H 0.97007 * 119.99772 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7214 -1.2492 5 7 2.0183 -0.6906 1.1962 6 7 1.2497 -1.2795 2.2153 7 7 2.0786 -1.7733 3.0701 8 7 3.2878 -1.5574 2.6954 9 6 3.3066 -0.8992 1.5567 10 16 4.7388 -0.3855 0.6679 11 6 6.0327 -1.0196 1.7633 12 6 7.3853 -0.6877 1.1876 13 8 7.4665 -0.0817 0.1401 14 7 8.5047 -1.0643 1.8368 15 6 9.7353 -0.7620 1.3135 16 1 9.8075 -0.2223 0.3807 17 6 10.8894 -1.1507 1.9824 18 7 10.8014 -1.8077 3.1171 19 14 12.5661 -0.7393 1.2689 20 1 12.3930 -0.0006 -0.0076 21 1 13.3201 0.1039 2.2310 22 1 13.3178 -1.9947 1.0158 23 1 -0.3633 0.5139 0.8899 24 1 -0.3633 0.5139 -0.8899 25 1 -0.3633 -1.0276 0.0005 26 1 3.1300 1.4425 -0.0005 27 1 1.6767 1.9563 -0.8900 28 1 1.6767 1.9564 0.8899 29 1 1.6767 -1.7489 -1.2492 30 1 1.6767 -0.2075 -2.1392 31 1 3.1300 -0.7210 -1.2495 32 1 5.9333 -0.5604 2.7469 33 1 5.9329 -2.1011 1.8555 34 1 8.4398 -1.5486 2.6748 35 1 11.6072 -2.0788 3.5844 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000076610016.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:47:14 Heat of formation + Delta-G solvation = 70.758790 kcal Electronic energy + Delta-G solvation = -19937.882313 eV Core-core repulsion = 16713.925478 eV Total energy + Delta-G solvation = -3223.956835 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 285.100 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -42.83715 -38.32397 -37.88939 -34.16457 -32.30638 -32.20243 -31.48645 -29.43812 -27.89901 -27.83068 -25.03372 -24.55616 -22.83233 -20.96699 -19.59476 -18.21157 -17.69712 -16.56387 -16.52113 -16.08964 -14.91113 -14.78593 -14.62488 -14.46492 -14.29324 -13.78226 -13.49046 -13.10583 -12.91814 -12.74177 -12.58638 -12.29221 -12.11976 -12.04721 -11.86228 -11.65468 -11.52462 -11.18220 -10.97787 -10.84991 -10.44849 -10.43886 -10.41953 -10.31761 -9.69790 -8.76688 -8.17397 -7.81595 -6.56481 -3.98828 0.84157 0.93254 2.00365 2.05929 2.28827 3.07016 3.20538 3.27147 3.63712 3.93248 4.05551 4.27032 4.38997 4.61974 4.74695 5.00655 5.08052 5.12326 5.13606 5.24247 5.29621 5.36405 5.37407 5.46094 5.52059 5.67357 5.69543 5.80126 5.89442 6.02744 6.14939 7.41831 7.85108 8.36850 8.47633 8.98416 9.31337 9.78718 10.60178 Molecular weight = 285.10amu Principal moments of inertia in cm(-1) A = 0.035150 B = 0.003613 C = 0.003354 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 796.390564 B = 7747.364359 C = 8347.389994 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.170 3.830 3 C -0.169 4.169 4 C -0.169 4.169 5 N -0.356 5.356 6 N -0.092 5.092 7 N -0.039 5.039 8 N -0.339 5.339 9 C 0.202 3.798 10 S 0.116 5.884 11 C -0.141 4.141 12 C 0.448 3.552 13 O -0.587 6.587 14 N -0.542 5.542 15 C -0.305 4.305 16 H 0.108 0.892 17 C 0.027 3.973 18 N -0.892 5.892 19 Si 0.933 3.067 20 H -0.266 1.266 21 H -0.280 1.280 22 H -0.280 1.280 23 H 0.070 0.930 24 H 0.081 0.919 25 H 0.070 0.930 26 H 0.081 0.919 27 H 0.090 0.910 28 H 0.068 0.932 29 H 0.068 0.932 30 H 0.090 0.910 31 H 0.081 0.919 32 H 0.114 0.886 33 H 0.114 0.886 34 H 0.397 0.603 35 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.895 3.585 -6.185 18.346 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.087 3.913 3 C -0.228 4.228 4 C -0.228 4.228 5 N -0.157 5.157 6 N -0.078 5.078 7 N -0.035 5.035 8 N -0.196 5.196 9 C -0.182 4.182 10 S 0.341 5.659 11 C -0.293 4.293 12 C 0.232 3.768 13 O -0.474 6.474 14 N -0.177 5.177 15 C -0.435 4.435 16 H 0.126 0.874 17 C -0.176 4.176 18 N -0.532 5.532 19 Si 0.760 3.240 20 H -0.190 1.190 21 H -0.205 1.205 22 H -0.206 1.206 23 H 0.089 0.911 24 H 0.100 0.900 25 H 0.089 0.911 26 H 0.099 0.901 27 H 0.108 0.892 28 H 0.087 0.913 29 H 0.087 0.913 30 H 0.108 0.892 31 H 0.099 0.901 32 H 0.132 0.868 33 H 0.132 0.868 34 H 0.231 0.769 35 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -17.249 3.852 -6.648 18.883 hybrid contribution 0.915 -0.488 0.841 1.335 sum -16.334 3.364 -5.807 17.659 Atomic orbital electron populations 1.21968 0.90686 1.03979 1.03605 1.21176 0.96930 0.92492 0.80703 1.22370 1.03671 0.92680 1.04083 1.22371 1.03674 1.01267 0.95496 1.51912 1.02987 1.41222 1.19569 1.82345 1.16855 1.13485 0.95154 1.77811 0.95050 1.12477 1.18162 1.74972 1.14399 1.19846 1.10339 1.28451 0.93488 0.99074 0.97200 1.86350 0.86840 1.67967 1.24758 1.23896 0.95929 1.06542 1.02928 1.18818 0.83893 0.86751 0.87304 1.90556 1.86162 1.46276 1.24383 1.41755 1.04485 1.48913 1.22517 1.19810 0.81180 1.34741 1.07751 0.87437 1.25348 1.00316 0.96285 0.95679 1.69627 1.30620 1.37637 1.15293 0.85744 0.80856 0.78302 0.79128 1.19030 1.20546 1.20552 0.91063 0.89972 0.91059 0.90059 0.89151 0.91284 0.91286 0.89152 0.90056 0.86806 0.86812 0.76918 0.91528 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.09 8.08 37.16 0.30 -0.79 16 2 C 0.17 1.61 1.10 -131.82 -0.14 1.47 16 3 C -0.17 -1.43 8.52 37.16 0.32 -1.11 16 4 C -0.17 -1.43 8.52 37.16 0.32 -1.11 16 5 N -0.36 -4.78 3.51 -48.59 -0.17 -4.95 16 6 N -0.09 -1.41 13.08 60.35 0.79 -0.62 16 7 N -0.04 -0.68 13.38 60.35 0.81 0.13 16 8 N -0.34 -5.86 11.57 30.50 0.35 -5.51 16 9 C 0.20 3.08 7.65 -89.18 -0.68 2.40 16 10 S 0.12 1.77 17.24 -107.50 -1.85 -0.09 16 11 C -0.14 -2.45 5.72 36.00 0.21 -2.24 16 12 C 0.45 10.01 7.80 -10.99 -0.09 9.92 16 13 O -0.59 -14.75 15.44 5.55 0.09 -14.66 16 14 N -0.54 -13.14 5.29 -10.96 -0.06 -13.20 16 15 C -0.31 -8.12 9.68 -14.93 -0.14 -8.26 16 16 H 0.11 2.98 7.16 -52.48 -0.38 2.60 16 17 C 0.03 0.69 5.50 -17.47 -0.10 0.60 16 18 N -0.89 -23.43 13.05 55.50 0.72 -22.70 16 19 Si 0.93 20.14 29.55 -169.99 -5.02 15.11 16 20 H -0.27 -5.72 7.11 56.52 0.40 -5.32 16 21 H -0.28 -5.96 7.11 56.52 0.40 -5.56 16 22 H -0.28 -5.96 7.11 56.52 0.40 -5.56 16 23 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 24 H 0.08 0.40 8.14 -51.93 -0.42 -0.03 16 25 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 26 H 0.08 0.81 6.03 -51.93 -0.31 0.49 16 27 H 0.09 0.51 8.14 -51.93 -0.42 0.09 16 28 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 29 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 30 H 0.09 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.08 0.81 6.03 -51.93 -0.31 0.49 16 32 H 0.11 1.85 8.14 -51.91 -0.42 1.43 16 33 H 0.11 1.85 8.14 -51.91 -0.42 1.43 16 34 H 0.40 9.26 7.90 -40.82 -0.32 8.93 16 35 H 0.27 6.80 8.31 -40.82 -0.34 6.46 16 LS Contribution 314.67 15.07 4.74 4.74 Total: -1.00 -30.75 314.67 -3.88 -34.64 By element: Atomic # 1 Polarization: 10.50 SS G_CDS: -4.26 Total: 6.23 kcal Atomic # 6 Polarization: 0.89 SS G_CDS: -0.01 Total: 0.87 kcal Atomic # 7 Polarization: -49.30 SS G_CDS: 2.45 Total: -46.85 kcal Atomic # 8 Polarization: -14.75 SS G_CDS: 0.09 Total: -14.66 kcal Atomic # 14 Polarization: 20.14 SS G_CDS: -5.02 Total: 15.11 kcal Atomic # 16 Polarization: 1.77 SS G_CDS: -1.85 Total: -0.09 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -30.75 -3.88 -34.64 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000076610016.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.395 kcal (2) G-P(sol) polarization free energy of solvation -30.754 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.641 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.882 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.636 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.759 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds