Wall clock time and date at job start Wed Apr 15 2020 11:47:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.09001 * 109.46796 * 2 1 4 4 C 1.50701 * 109.46578 * 119.99326 * 2 1 3 5 5 H 1.08002 * 120.00022 * 120.00506 * 4 2 1 6 6 C 1.37879 * 120.00302 * 300.00004 * 4 2 1 7 7 N 1.31516 * 119.99643 * 359.97438 * 6 4 2 8 8 Si 1.86797 * 120.00038 * 180.02562 * 6 4 2 9 9 H 1.48492 * 109.47455 * 89.99879 * 8 6 4 10 10 H 1.48499 * 109.47127 * 210.00038 * 8 6 4 11 11 H 1.48506 * 109.46974 * 329.99563 * 8 6 4 12 12 N 1.46497 * 109.47335 * 239.99136 * 2 1 3 13 13 C 1.34777 * 119.99525 * 84.99977 * 12 2 1 14 14 O 1.21283 * 120.00463 * 0.02562 * 13 12 2 15 15 C 1.50700 * 119.99675 * 179.72583 * 13 12 2 16 16 C 1.53004 * 109.47208 * 180.27843 * 15 13 12 17 17 S 1.80996 * 109.47346 * 179.97438 * 16 15 13 18 18 C 1.76197 * 100.00001 * 179.97438 * 17 16 15 19 19 N 1.31543 * 126.45608 * 0.02873 * 18 17 16 20 20 N 1.28413 * 110.50283 * 179.97438 * 19 18 17 21 21 N 1.28910 * 110.34120 * 0.02562 * 20 19 18 22 22 N 1.35398 * 126.45108 * 179.71274 * 18 17 16 23 23 C 1.46505 * 127.38573 * 359.97438 * 22 18 17 24 24 H 1.08998 * 109.46811 * 60.00625 * 1 2 3 25 25 H 1.08994 * 109.47201 * 180.02562 * 1 2 3 26 26 H 1.08995 * 109.47273 * 300.00977 * 1 2 3 27 27 H 0.96996 * 119.99343 * 179.97438 * 7 6 4 28 28 H 0.97000 * 120.00580 * 265.00723 * 12 2 1 29 29 H 1.09009 * 109.47352 * 300.27556 * 15 13 12 30 30 H 1.08998 * 109.47585 * 60.27844 * 15 13 12 31 31 H 1.09000 * 109.46887 * 300.00372 * 16 15 13 32 32 H 1.08998 * 109.46846 * 59.99549 * 16 15 13 33 33 H 1.08992 * 109.46951 * 89.99800 * 23 22 18 34 34 H 1.09004 * 109.46842 * 209.99992 * 23 22 18 35 35 H 1.08998 * 109.46831 * 329.99449 * 23 22 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7103 1.2306 5 1 2.6532 -1.5884 1.1317 6 6 1.6991 -0.2391 2.4828 7 7 0.9435 0.8305 2.6033 8 14 2.3223 -1.1192 4.0081 9 1 3.6302 -0.5438 4.4121 10 1 1.3442 -0.9485 5.1124 11 1 2.4877 -2.5651 3.7125 12 7 2.0185 -0.6908 -1.1960 13 6 2.1472 -0.0185 -2.3570 14 8 1.8591 1.1584 -2.4116 15 6 2.6554 -0.7275 -3.5859 16 6 2.7122 0.2568 -4.7558 17 16 3.3233 -0.5945 -6.2315 18 6 3.2871 0.7341 -7.3883 19 7 2.9049 1.9696 -7.1479 20 7 3.0021 2.6852 -8.2097 21 7 3.4447 1.9745 -9.1900 22 7 3.6530 0.6770 -8.6907 23 6 4.1560 -0.4878 -9.4231 24 1 -0.3633 0.5137 -0.8900 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5140 0.8898 27 1 0.7089 1.1617 3.4842 28 1 2.2491 -1.6319 -1.1524 29 1 3.6539 -1.1197 -3.3923 30 1 1.9842 -1.5494 -3.8349 31 1 1.7138 0.6491 -4.9494 32 1 3.3834 1.0788 -4.5068 33 1 3.3189 -1.0291 -9.8638 34 1 4.8309 -0.1569 -10.2125 35 1 4.6926 -1.1439 -8.7378 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000194635600.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:47:16 Heat of formation + Delta-G solvation = 71.492120 kcal Electronic energy + Delta-G solvation = -19240.485889 eV Core-core repulsion = 16016.560854 eV Total energy + Delta-G solvation = -3223.925035 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 285.100 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -43.09747 -39.03750 -35.49672 -34.95681 -32.97584 -32.47187 -32.25805 -28.98455 -28.65117 -25.33674 -24.98856 -23.59619 -23.25011 -20.95219 -19.47824 -18.32842 -17.41066 -17.06845 -17.01990 -15.97518 -15.62228 -15.25876 -14.75881 -14.42246 -14.19178 -13.98675 -13.53183 -13.14036 -12.77548 -12.63007 -12.45738 -12.29585 -11.85406 -11.57989 -11.39216 -11.17712 -11.09585 -10.99241 -10.91492 -10.76450 -10.74568 -10.33936 -10.26365 -9.15388 -9.07908 -8.58206 -8.35654 -7.97942 -6.15060 -4.24808 0.38277 0.58995 1.55811 1.79911 1.98844 3.22575 3.26971 3.29747 3.31136 3.83741 4.03516 4.35179 4.44173 4.49772 4.61477 4.78285 4.86887 5.04568 5.08713 5.17256 5.26773 5.59463 5.60787 5.65143 5.87346 6.79470 6.93163 7.11676 7.40228 7.50961 7.65546 7.87688 8.12028 8.16133 8.59015 8.73515 9.04402 9.42764 10.90911 Molecular weight = 285.10amu Principal moments of inertia in cm(-1) A = 0.043981 B = 0.002760 C = 0.002667 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 636.482586 B =10141.467016 C =10494.709106 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.264 3.736 3 H 0.050 0.950 4 C -0.535 4.535 5 H 0.061 0.939 6 C 0.066 3.934 7 N -0.883 5.883 8 Si 0.902 3.098 9 H -0.279 1.279 10 H -0.285 1.285 11 H -0.274 1.274 12 N -0.707 5.707 13 C 0.506 3.494 14 O -0.548 6.548 15 C -0.132 4.132 16 C -0.086 4.086 17 S 0.026 5.974 18 C 0.217 3.783 19 N -0.325 5.325 20 N -0.030 5.030 21 N -0.087 5.087 22 N -0.369 5.369 23 C 0.087 3.913 24 H 0.015 0.985 25 H 0.026 0.974 26 H 0.090 0.910 27 H 0.265 0.735 28 H 0.390 0.610 29 H 0.100 0.900 30 H 0.099 0.901 31 H 0.111 0.889 32 H 0.111 0.889 33 H 0.094 0.906 34 H 0.105 0.895 35 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.339 -8.905 -20.136 22.911 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.162 3.838 3 H 0.067 0.933 4 C -0.574 4.574 5 H 0.079 0.921 6 C -0.137 4.137 7 N -0.520 5.520 8 Si 0.730 3.270 9 H -0.205 1.205 10 H -0.211 1.211 11 H -0.199 1.199 12 N -0.354 5.354 13 C 0.289 3.711 14 O -0.427 6.427 15 C -0.174 4.174 16 C -0.236 4.236 17 S 0.252 5.748 18 C -0.168 4.168 19 N -0.181 5.181 20 N -0.026 5.026 21 N -0.074 5.074 22 N -0.169 5.169 23 C -0.055 4.055 24 H 0.034 0.966 25 H 0.046 0.954 26 H 0.109 0.891 27 H 0.075 0.925 28 H 0.222 0.778 29 H 0.118 0.882 30 H 0.118 0.882 31 H 0.130 0.870 32 H 0.130 0.870 33 H 0.113 0.887 34 H 0.124 0.876 35 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 6.127 -7.705 -20.566 22.801 hybrid contribution 0.305 -0.639 0.938 1.175 sum 6.433 -8.344 -19.628 22.277 Atomic orbital electron populations 1.22082 0.98411 0.99132 1.01003 1.18771 0.91072 0.94032 0.79892 0.93266 1.21207 1.32566 1.13286 0.90309 0.92051 1.24897 0.94783 0.94962 0.99098 1.69903 1.35731 1.22400 1.23955 0.86440 0.78626 0.79792 0.82184 1.20549 1.21061 1.19851 1.46514 1.64916 1.13605 1.10396 1.20041 0.79143 0.87518 0.84441 1.90713 1.51178 1.15888 1.84947 1.21462 1.04300 0.98765 0.92904 1.23505 1.07493 1.01094 0.91460 1.85532 1.81630 1.05738 1.01921 1.27763 0.99240 1.00321 0.89504 1.75066 1.23398 0.99132 1.20547 1.77906 1.08865 1.22240 0.93556 1.82470 1.20171 0.85714 1.19060 1.51509 1.46973 1.11223 1.07166 1.22257 1.01413 0.83631 0.98155 0.96582 0.95447 0.89122 0.92518 0.77803 0.88176 0.88243 0.87028 0.87018 0.88747 0.87641 0.87979 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.59 9.26 37.16 0.34 -3.25 16 2 C 0.26 6.51 2.56 -69.08 -0.18 6.34 16 3 H 0.05 1.42 7.58 -51.93 -0.39 1.02 16 4 C -0.54 -13.80 8.73 -34.44 -0.30 -14.10 16 5 H 0.06 1.50 7.74 -52.49 -0.41 1.09 16 6 C 0.07 1.75 5.30 -17.82 -0.09 1.65 16 7 N -0.88 -24.59 11.32 55.43 0.63 -23.97 16 8 Si 0.90 20.25 29.54 -169.99 -5.02 15.23 16 9 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 10 H -0.28 -6.40 7.11 56.52 0.40 -5.99 16 11 H -0.27 -5.98 7.11 56.52 0.40 -5.57 16 12 N -0.71 -13.65 5.07 -54.93 -0.28 -13.93 16 13 C 0.51 9.14 7.79 -10.98 -0.09 9.05 16 14 O -0.55 -12.41 15.64 5.55 0.09 -12.32 16 15 C -0.13 -1.53 5.70 -27.88 -0.16 -1.69 16 16 C -0.09 -1.04 4.52 37.16 0.17 -0.87 16 17 S 0.03 0.23 21.79 -107.50 -2.34 -2.11 16 18 C 0.22 2.56 8.15 -89.17 -0.73 1.84 16 19 N -0.33 -4.96 11.57 30.50 0.35 -4.60 16 20 N -0.03 -0.46 13.38 60.35 0.81 0.34 16 21 N -0.09 -1.15 13.93 60.35 0.84 -0.31 16 22 N -0.37 -3.77 4.09 -68.10 -0.28 -4.04 16 23 C 0.09 0.38 11.40 59.85 0.68 1.06 16 24 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 25 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 26 H 0.09 2.42 6.07 -51.93 -0.32 2.10 16 27 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 28 H 0.39 6.29 8.54 -40.82 -0.35 5.94 16 29 H 0.10 0.94 8.14 -51.92 -0.42 0.52 16 30 H 0.10 0.91 8.14 -51.93 -0.42 0.49 16 31 H 0.11 1.51 8.10 -51.92 -0.42 1.09 16 32 H 0.11 1.52 8.10 -51.92 -0.42 1.10 16 33 H 0.09 0.26 8.14 -51.93 -0.42 -0.17 16 34 H 0.11 0.30 8.14 -51.93 -0.42 -0.12 16 35 H 0.10 0.26 7.85 -51.93 -0.41 -0.14 16 LS Contribution 322.21 15.07 4.86 4.86 Total: -1.00 -33.48 322.21 -5.08 -38.56 By element: Atomic # 1 Polarization: 6.65 SS G_CDS: -4.38 Total: 2.27 kcal Atomic # 6 Polarization: 0.38 SS G_CDS: -0.35 Total: 0.03 kcal Atomic # 7 Polarization: -48.58 SS G_CDS: 2.07 Total: -46.51 kcal Atomic # 8 Polarization: -12.41 SS G_CDS: 0.09 Total: -12.32 kcal Atomic # 14 Polarization: 20.25 SS G_CDS: -5.02 Total: 15.23 kcal Atomic # 16 Polarization: 0.23 SS G_CDS: -2.34 Total: -2.11 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -33.48 -5.08 -38.56 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000194635600.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.051 kcal (2) G-P(sol) polarization free energy of solvation -33.477 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.574 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.082 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.559 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.492 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds