Wall clock time and date at job start Wed Apr 15 2020 11:47:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.09001 * 109.46796 * 2 1 4 4 C 1.50701 * 109.46578 * 119.99326 * 2 1 3 5 5 H 1.08002 * 120.00022 * 120.00506 * 4 2 1 6 6 C 1.37879 * 120.00302 * 300.00004 * 4 2 1 7 7 N 1.31516 * 119.99643 * 359.97438 * 6 4 2 8 8 Si 1.86797 * 120.00038 * 180.02562 * 6 4 2 9 9 H 1.48492 * 109.47455 * 89.99879 * 8 6 4 10 10 H 1.48499 * 109.47127 * 210.00038 * 8 6 4 11 11 H 1.48506 * 109.46974 * 329.99563 * 8 6 4 12 12 N 1.46497 * 109.47335 * 239.99136 * 2 1 3 13 13 C 1.34777 * 119.99525 * 84.99977 * 12 2 1 14 14 O 1.21283 * 120.00463 * 0.02562 * 13 12 2 15 15 C 1.50700 * 119.99675 * 179.72583 * 13 12 2 16 16 C 1.53004 * 109.47208 * 180.27843 * 15 13 12 17 17 S 1.80996 * 109.47346 * 179.97438 * 16 15 13 18 18 C 1.76197 * 100.00001 * 179.97438 * 17 16 15 19 19 N 1.31543 * 126.45608 * 0.02873 * 18 17 16 20 20 N 1.28413 * 110.50283 * 179.97438 * 19 18 17 21 21 N 1.28910 * 110.34120 * 0.02562 * 20 19 18 22 22 N 1.35398 * 126.45108 * 179.71274 * 18 17 16 23 23 C 1.46505 * 127.38573 * 359.97438 * 22 18 17 24 24 H 1.08998 * 109.46811 * 60.00625 * 1 2 3 25 25 H 1.08994 * 109.47201 * 180.02562 * 1 2 3 26 26 H 1.08995 * 109.47273 * 300.00977 * 1 2 3 27 27 H 0.96996 * 119.99343 * 179.97438 * 7 6 4 28 28 H 0.97000 * 120.00580 * 265.00723 * 12 2 1 29 29 H 1.09009 * 109.47352 * 300.27556 * 15 13 12 30 30 H 1.08998 * 109.47585 * 60.27844 * 15 13 12 31 31 H 1.09000 * 109.46887 * 300.00372 * 16 15 13 32 32 H 1.08998 * 109.46846 * 59.99549 * 16 15 13 33 33 H 1.08992 * 109.46951 * 89.99800 * 23 22 18 34 34 H 1.09004 * 109.46842 * 209.99992 * 23 22 18 35 35 H 1.08998 * 109.46831 * 329.99449 * 23 22 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7103 1.2306 5 1 2.6532 -1.5884 1.1317 6 6 1.6991 -0.2391 2.4828 7 7 0.9435 0.8305 2.6033 8 14 2.3223 -1.1192 4.0081 9 1 3.6302 -0.5438 4.4121 10 1 1.3442 -0.9485 5.1124 11 1 2.4877 -2.5651 3.7125 12 7 2.0185 -0.6908 -1.1960 13 6 2.1472 -0.0185 -2.3570 14 8 1.8591 1.1584 -2.4116 15 6 2.6554 -0.7275 -3.5859 16 6 2.7122 0.2568 -4.7558 17 16 3.3233 -0.5945 -6.2315 18 6 3.2871 0.7341 -7.3883 19 7 2.9049 1.9696 -7.1479 20 7 3.0021 2.6852 -8.2097 21 7 3.4447 1.9745 -9.1900 22 7 3.6530 0.6770 -8.6907 23 6 4.1560 -0.4878 -9.4231 24 1 -0.3633 0.5137 -0.8900 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5140 0.8898 27 1 0.7089 1.1617 3.4842 28 1 2.2491 -1.6319 -1.1524 29 1 3.6539 -1.1197 -3.3923 30 1 1.9842 -1.5494 -3.8349 31 1 1.7138 0.6491 -4.9494 32 1 3.3834 1.0788 -4.5068 33 1 3.3189 -1.0291 -9.8638 34 1 4.8309 -0.1569 -10.2125 35 1 4.6926 -1.1439 -8.7378 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000194635600.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:47:16 Heat of formation + Delta-G solvation = 46.341076 kcal Electronic energy + Delta-G solvation = -19241.576520 eV Core-core repulsion = 16016.560854 eV Total energy + Delta-G solvation = -3225.015666 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 285.100 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -44.03179 -40.57267 -36.77241 -36.26167 -34.35724 -33.97042 -33.35820 -30.79760 -29.26001 -27.32792 -26.12704 -24.55773 -24.20757 -22.64136 -21.08269 -19.16227 -18.93254 -17.93732 -17.86461 -17.60386 -17.11889 -16.71682 -16.09940 -15.63403 -15.07162 -14.89171 -14.69602 -14.47344 -14.29626 -13.78372 -13.59921 -13.55793 -13.15464 -12.93929 -12.87624 -12.73977 -12.53942 -12.33098 -12.23642 -12.10798 -12.07301 -11.83222 -11.54442 -11.08337 -10.73649 -10.55409 -9.71678 -9.09915 -8.15471 -6.32995 -0.43555 -0.29925 0.64793 0.97718 1.12240 1.47235 1.47518 1.58218 1.85533 2.38572 2.72667 3.10626 3.15429 3.55952 3.72014 3.89242 4.07059 4.11938 4.25283 4.47211 4.54168 4.58109 4.68876 4.79434 4.92301 4.95520 4.98313 5.13015 5.47017 5.64265 5.72517 5.93686 6.12997 6.76186 7.00059 7.19182 7.35403 7.61536 8.90842 Molecular weight = 285.10amu Principal moments of inertia in cm(-1) A = 0.043981 B = 0.002760 C = 0.002667 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 636.482586 B =10141.467016 C =10494.709106 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.269 3.731 3 H -0.004 1.004 4 C -0.544 4.544 5 H 0.078 0.922 6 C 0.011 3.989 7 N -0.920 5.920 8 Si 0.972 3.028 9 H -0.279 1.279 10 H -0.287 1.287 11 H -0.256 1.256 12 N -0.703 5.703 13 C 0.500 3.500 14 O -0.602 6.602 15 C -0.113 4.113 16 C -0.102 4.102 17 S 0.121 5.879 18 C 0.199 3.801 19 N -0.365 5.365 20 N -0.064 5.064 21 N -0.097 5.097 22 N -0.355 5.355 23 C 0.070 3.930 24 H 0.011 0.989 25 H 0.043 0.957 26 H 0.063 0.937 27 H 0.264 0.736 28 H 0.409 0.591 29 H 0.135 0.865 30 H 0.137 0.863 31 H 0.090 0.910 32 H 0.089 0.911 33 H 0.117 0.883 34 H 0.122 0.878 35 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.803 -12.722 -21.189 25.917 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.165 3.835 3 H 0.014 0.986 4 C -0.582 4.582 5 H 0.096 0.904 6 C -0.189 4.189 7 N -0.558 5.558 8 Si 0.797 3.203 9 H -0.205 1.205 10 H -0.213 1.213 11 H -0.180 1.180 12 N -0.352 5.352 13 C 0.285 3.715 14 O -0.484 6.484 15 C -0.154 4.154 16 C -0.252 4.252 17 S 0.347 5.653 18 C -0.186 4.186 19 N -0.223 5.223 20 N -0.060 5.060 21 N -0.085 5.085 22 N -0.156 5.156 23 C -0.069 4.069 24 H 0.030 0.970 25 H 0.062 0.938 26 H 0.082 0.918 27 H 0.073 0.927 28 H 0.245 0.755 29 H 0.153 0.847 30 H 0.155 0.845 31 H 0.109 0.891 32 H 0.107 0.893 33 H 0.135 0.865 34 H 0.141 0.859 35 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 7.620 -11.592 -21.668 25.728 hybrid contribution -0.110 0.493 1.149 1.255 sum 7.511 -11.099 -20.518 24.507 Atomic orbital electron populations 1.21905 0.98451 0.99563 0.99462 1.18319 0.91040 0.91912 0.82196 0.98611 1.21579 1.32406 1.13573 0.90684 0.90431 1.25834 0.94929 0.95606 1.02484 1.70068 1.37147 1.24083 1.24541 0.85339 0.77630 0.79339 0.77992 1.20508 1.21267 1.18022 1.46222 1.65091 1.14418 1.09497 1.21143 0.77630 0.87029 0.85650 1.90698 1.53154 1.18654 1.85886 1.21386 1.06640 0.98428 0.88993 1.23382 1.06226 1.01462 0.94129 1.85052 1.80331 1.01961 0.97980 1.28262 0.99059 1.00404 0.90829 1.74945 1.25073 1.00878 1.21370 1.77869 1.10540 1.23460 0.94132 1.82324 1.19988 0.87151 1.19031 1.51827 1.45596 1.11334 1.06808 1.22875 1.02877 0.82170 0.99007 0.96963 0.93791 0.91811 0.92664 0.75517 0.84688 0.84496 0.89115 0.89274 0.86453 0.85924 0.85532 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.72 9.26 71.98 0.67 -6.05 16 2 C 0.27 13.55 2.56 44.25 0.11 13.66 16 3 H 0.00 -0.24 7.58 -2.39 -0.02 -0.26 16 4 C -0.54 -27.88 8.73 25.60 0.22 -27.65 16 5 H 0.08 3.63 7.74 -2.91 -0.02 3.61 16 6 C 0.01 0.60 5.30 84.65 0.45 1.04 16 7 N -0.92 -52.62 11.32 21.45 0.24 -52.38 16 8 Si 0.97 41.12 29.54 68.60 2.03 43.14 16 9 H -0.28 -11.72 7.11 99.48 0.71 -11.01 16 10 H -0.29 -12.13 7.11 99.48 0.71 -11.42 16 11 H -0.26 -10.05 7.11 99.48 0.71 -9.35 16 12 N -0.70 -26.56 5.07 -446.08 -2.26 -28.82 16 13 C 0.50 17.80 7.79 87.66 0.68 18.48 16 14 O -0.60 -28.32 15.64 -3.04 -0.05 -28.37 16 15 C -0.11 -2.29 5.70 29.85 0.17 -2.12 16 16 C -0.10 -2.32 4.52 71.98 0.33 -2.00 16 17 S 0.12 1.75 21.79 -56.49 -1.23 0.51 16 18 C 0.20 4.42 8.15 179.84 1.47 5.89 16 19 N -0.37 -11.33 11.57 -57.41 -0.66 -12.00 16 20 N -0.06 -2.06 13.38 37.02 0.50 -1.56 16 21 N -0.10 -2.54 13.93 37.02 0.52 -2.03 16 22 N -0.36 -6.58 4.09 -369.36 -1.51 -8.09 16 23 C 0.07 0.36 11.40 127.77 1.46 1.82 16 24 H 0.01 0.56 8.14 -2.39 -0.02 0.54 16 25 H 0.04 1.98 8.14 -2.39 -0.02 1.96 16 26 H 0.06 3.52 6.07 -2.39 -0.01 3.51 16 27 H 0.26 14.35 8.31 -92.71 -0.77 13.58 16 28 H 0.41 12.15 8.54 -92.71 -0.79 11.36 16 29 H 0.14 1.89 8.14 -2.38 -0.02 1.87 16 30 H 0.14 1.85 8.14 -2.39 -0.02 1.83 16 31 H 0.09 2.47 8.10 -2.39 -0.02 2.45 16 32 H 0.09 2.46 8.10 -2.40 -0.02 2.44 16 33 H 0.12 0.16 8.14 -2.39 -0.02 0.14 16 34 H 0.12 0.28 8.14 -2.38 -0.02 0.26 16 35 H 0.13 0.07 7.85 -2.39 -0.02 0.05 16 Total: -1.00 -78.41 322.21 3.45 -74.96 By element: Atomic # 1 Polarization: 11.22 SS G_CDS: 0.33 Total: 11.55 kcal Atomic # 6 Polarization: -2.49 SS G_CDS: 5.55 Total: 3.07 kcal Atomic # 7 Polarization: -101.69 SS G_CDS: -3.18 Total: -104.87 kcal Atomic # 8 Polarization: -28.32 SS G_CDS: -0.05 Total: -28.37 kcal Atomic # 14 Polarization: 41.12 SS G_CDS: 2.03 Total: 43.14 kcal Atomic # 16 Polarization: 1.75 SS G_CDS: -1.23 Total: 0.51 kcal Total: -78.41 3.45 -74.96 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000194635600.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.301 kcal (2) G-P(sol) polarization free energy of solvation -78.409 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.893 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.448 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.960 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.341 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds