Wall clock time and date at job start Wed Apr 15 2020 11:47:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09004 * 109.46961 * 2 1 4 4 C 1.50697 * 109.47217 * 239.99523 * 2 1 3 5 5 H 1.08001 * 120.00040 * 245.46302 * 4 2 1 6 6 C 1.37877 * 120.00057 * 65.46521 * 4 2 1 7 7 N 1.31519 * 119.99869 * 9.55495 * 6 4 2 8 8 Si 1.86794 * 119.99998 * 189.55849 * 6 4 2 9 9 H 1.48504 * 109.47413 * 84.99254 * 8 6 4 10 10 H 1.48504 * 109.47330 * 204.99188 * 8 6 4 11 11 H 1.48498 * 109.47435 * 324.99361 * 8 6 4 12 12 N 1.46502 * 109.46937 * 119.99805 * 2 1 3 13 13 C 1.34780 * 119.99847 * 275.00212 * 12 2 1 14 14 O 1.21284 * 120.00075 * 359.97438 * 13 12 2 15 15 C 1.50697 * 120.00212 * 180.02562 * 13 12 2 16 16 C 1.52995 * 109.47444 * 179.97438 * 15 13 12 17 17 S 1.81003 * 109.47258 * 179.97438 * 16 15 13 18 18 C 1.76196 * 99.99965 * 180.02562 * 17 16 15 19 19 N 1.31541 * 126.45632 * 0.02988 * 18 17 16 20 20 N 1.28412 * 110.50402 * 180.02562 * 19 18 17 21 21 N 1.28903 * 110.34547 * 359.97438 * 20 19 18 22 22 N 1.35395 * 126.45243 * 179.71906 * 18 17 16 23 23 C 1.46503 * 127.38412 * 359.97261 * 22 18 17 24 24 H 1.08996 * 109.46715 * 303.68529 * 1 2 3 25 25 H 1.09005 * 109.46844 * 63.68135 * 1 2 3 26 26 H 1.08996 * 109.47156 * 183.67881 * 1 2 3 27 27 H 0.96999 * 120.00039 * 180.02562 * 7 6 4 28 28 H 0.96992 * 120.00532 * 95.00002 * 12 2 1 29 29 H 1.09000 * 109.47027 * 299.99913 * 15 13 12 30 30 H 1.08999 * 109.47130 * 59.99264 * 15 13 12 31 31 H 1.09000 * 109.47361 * 300.00227 * 16 15 13 32 32 H 1.09000 * 109.46761 * 60.00166 * 16 15 13 33 33 H 1.09001 * 109.47008 * 90.00608 * 23 22 18 34 34 H 1.09004 * 109.47289 * 210.00215 * 23 22 18 35 35 H 1.08994 * 109.47170 * 330.00462 * 23 22 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7105 -1.2304 5 1 2.5786 -1.6372 -1.1337 6 6 1.7947 -0.1775 -2.4796 7 7 1.2994 1.0355 -2.5936 8 14 2.1761 -1.1783 -4.0100 9 1 1.0241 -2.0613 -4.3239 10 1 2.4229 -0.2618 -5.1521 11 1 3.3845 -2.0076 -3.7708 12 7 2.0183 -0.6906 1.1962 13 6 2.1470 -0.0182 2.3572 14 8 1.8589 1.1587 2.4115 15 6 2.6498 -0.7283 3.5876 16 6 2.7017 0.2549 4.7586 17 16 3.3049 -0.5982 6.2366 18 6 3.2641 0.7294 7.3943 19 7 2.8831 1.9651 7.1533 20 7 2.9760 2.6798 8.2162 21 7 3.4144 1.9684 9.1977 22 7 3.6134 0.6683 8.7010 23 6 4.0978 -0.5012 9.4385 24 1 -0.3632 0.5700 0.8551 25 1 -0.3633 0.4557 -0.9212 26 1 -0.3633 -1.0255 0.0659 27 1 1.1319 1.4103 -3.4724 28 1 2.2490 -1.6317 1.1528 29 1 1.9776 -1.5506 3.8327 30 1 3.6491 -1.1202 3.3980 31 1 3.3741 1.0770 4.5133 32 1 1.7025 0.6470 4.9482 33 1 5.1850 -0.5465 9.3744 34 1 3.7985 -0.4213 10.4836 35 1 3.6703 -1.4059 9.0063 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000194635616.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:47:18 Heat of formation + Delta-G solvation = 70.271132 kcal Electronic energy + Delta-G solvation = -19235.437220 eV Core-core repulsion = 16011.459239 eV Total energy + Delta-G solvation = -3223.977981 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 285.100 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -43.09597 -39.03663 -35.49495 -34.94280 -32.97464 -32.46270 -32.24861 -29.08747 -28.65210 -25.31962 -24.98603 -23.59772 -23.25052 -20.98408 -19.48823 -18.32681 -17.41118 -17.06629 -17.01840 -15.95503 -15.62593 -15.26404 -14.75056 -14.40866 -14.18965 -13.98654 -13.53323 -13.14504 -12.77053 -12.62701 -12.44640 -12.28799 -11.91661 -11.63234 -11.39374 -11.18344 -11.06542 -11.02102 -10.91217 -10.79129 -10.74806 -10.39732 -10.30643 -9.17384 -9.10164 -8.53726 -8.35512 -8.00009 -6.17345 -4.23359 0.38424 0.59182 1.55964 1.80076 1.99066 3.22934 3.27087 3.30371 3.31338 3.83862 4.03670 4.35598 4.44333 4.49926 4.61632 4.78415 4.87063 5.04759 5.08843 5.16484 5.26706 5.59165 5.61181 5.65328 5.87567 6.72351 6.85457 7.04444 7.37237 7.49576 7.63610 7.80638 8.02942 8.16343 8.59253 8.75090 9.04492 9.42722 10.91133 Molecular weight = 285.10amu Principal moments of inertia in cm(-1) A = 0.044297 B = 0.002763 C = 0.002668 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 631.948459 B =10132.405940 C =10492.737938 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.262 3.738 3 H 0.057 0.943 4 C -0.538 4.538 5 H 0.061 0.939 6 C 0.069 3.931 7 N -0.880 5.880 8 Si 0.898 3.102 9 H -0.278 1.278 10 H -0.286 1.286 11 H -0.274 1.274 12 N -0.706 5.706 13 C 0.507 3.493 14 O -0.548 6.548 15 C -0.132 4.132 16 C -0.086 4.086 17 S 0.025 5.975 18 C 0.217 3.783 19 N -0.325 5.325 20 N -0.030 5.030 21 N -0.087 5.087 22 N -0.369 5.369 23 C 0.087 3.913 24 H 0.020 0.980 25 H 0.073 0.927 26 H 0.029 0.971 27 H 0.265 0.735 28 H 0.389 0.611 29 H 0.099 0.901 30 H 0.100 0.900 31 H 0.112 0.888 32 H 0.111 0.889 33 H 0.094 0.906 34 H 0.105 0.895 35 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.479 -9.332 20.283 22.990 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.160 3.840 3 H 0.074 0.926 4 C -0.577 4.577 5 H 0.080 0.920 6 C -0.135 4.135 7 N -0.517 5.517 8 Si 0.726 3.274 9 H -0.204 1.204 10 H -0.212 1.212 11 H -0.199 1.199 12 N -0.354 5.354 13 C 0.289 3.711 14 O -0.427 6.427 15 C -0.174 4.174 16 C -0.236 4.236 17 S 0.252 5.748 18 C -0.168 4.168 19 N -0.181 5.181 20 N -0.026 5.026 21 N -0.074 5.074 22 N -0.169 5.169 23 C -0.055 4.055 24 H 0.039 0.961 25 H 0.092 0.908 26 H 0.048 0.952 27 H 0.075 0.925 28 H 0.222 0.778 29 H 0.117 0.883 30 H 0.118 0.882 31 H 0.130 0.870 32 H 0.129 0.871 33 H 0.113 0.887 34 H 0.124 0.876 35 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 5.297 -8.107 20.719 22.871 hybrid contribution 0.181 -0.693 -0.977 1.211 sum 5.478 -8.800 19.743 22.298 Atomic orbital electron populations 1.22020 0.98814 0.98609 1.00630 1.18781 0.90595 0.94625 0.79958 0.92565 1.21155 1.37373 1.08700 0.90428 0.92047 1.24898 0.94951 0.94619 0.99081 1.69984 1.43659 1.13716 1.24311 0.86517 0.78709 0.79933 0.82263 1.20409 1.21154 1.19903 1.46496 1.64937 1.13585 1.10400 1.20043 0.79121 0.87523 0.84447 1.90716 1.51082 1.15875 1.84981 1.21457 1.04345 0.98752 0.92872 1.23506 1.07547 1.01097 0.91401 1.85531 1.81791 1.05746 1.01763 1.27761 0.99360 1.00321 0.89379 1.75066 1.23311 0.99230 1.20533 1.77902 1.08756 1.22315 0.93590 1.82472 1.20221 0.85539 1.19180 1.51511 1.47497 1.11015 1.06857 1.22256 1.01554 0.83302 0.98344 0.96090 0.90847 0.95231 0.92485 0.77827 0.88257 0.88161 0.86978 0.87058 0.88742 0.87646 0.87986 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.38 9.36 37.16 0.35 -3.03 16 2 C 0.26 6.44 2.42 -69.08 -0.17 6.27 16 3 H 0.06 1.63 7.52 -51.93 -0.39 1.24 16 4 C -0.54 -13.87 8.66 -34.44 -0.30 -14.17 16 5 H 0.06 1.50 7.74 -52.49 -0.41 1.09 16 6 C 0.07 1.82 5.17 -17.82 -0.09 1.73 16 7 N -0.88 -24.76 12.16 55.43 0.67 -24.09 16 8 Si 0.90 20.24 29.55 -169.99 -5.02 15.22 16 9 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 10 H -0.29 -6.48 7.11 56.52 0.40 -6.08 16 11 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 12 N -0.71 -13.59 5.07 -54.93 -0.28 -13.87 16 13 C 0.51 9.12 7.79 -10.99 -0.09 9.03 16 14 O -0.55 -12.39 15.64 5.55 0.09 -12.30 16 15 C -0.13 -1.53 5.70 -27.89 -0.16 -1.68 16 16 C -0.09 -1.04 4.52 37.15 0.17 -0.87 16 17 S 0.03 0.23 21.79 -107.50 -2.34 -2.12 16 18 C 0.22 2.57 8.15 -89.18 -0.73 1.84 16 19 N -0.33 -4.96 11.57 30.50 0.35 -4.61 16 20 N -0.03 -0.46 13.38 60.35 0.81 0.34 16 21 N -0.09 -1.15 13.93 60.35 0.84 -0.31 16 22 N -0.37 -3.77 4.09 -68.10 -0.28 -4.05 16 23 C 0.09 0.38 11.40 59.85 0.68 1.06 16 24 H 0.02 0.48 8.14 -51.93 -0.42 0.05 16 25 H 0.07 1.90 6.83 -51.93 -0.35 1.55 16 26 H 0.03 0.64 8.14 -51.93 -0.42 0.21 16 27 H 0.27 7.08 8.31 -40.82 -0.34 6.74 16 28 H 0.39 6.24 8.53 -40.82 -0.35 5.89 16 29 H 0.10 0.90 8.14 -51.93 -0.42 0.48 16 30 H 0.10 0.94 8.14 -51.93 -0.42 0.52 16 31 H 0.11 1.53 8.10 -51.92 -0.42 1.11 16 32 H 0.11 1.50 8.10 -51.92 -0.42 1.08 16 33 H 0.09 0.26 8.14 -51.93 -0.42 -0.16 16 34 H 0.10 0.30 8.14 -51.93 -0.42 -0.13 16 35 H 0.10 0.26 7.85 -51.93 -0.41 -0.15 16 LS Contribution 323.51 15.07 4.88 4.88 Total: -1.00 -33.66 323.51 -5.04 -38.70 By element: Atomic # 1 Polarization: 6.45 SS G_CDS: -4.42 Total: 2.03 kcal Atomic # 6 Polarization: 0.51 SS G_CDS: -0.33 Total: 0.18 kcal Atomic # 7 Polarization: -48.69 SS G_CDS: 2.12 Total: -46.58 kcal Atomic # 8 Polarization: -12.39 SS G_CDS: 0.09 Total: -12.30 kcal Atomic # 14 Polarization: 20.24 SS G_CDS: -5.02 Total: 15.22 kcal Atomic # 16 Polarization: 0.23 SS G_CDS: -2.34 Total: -2.12 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -33.66 -5.04 -38.70 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000194635616.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.966 kcal (2) G-P(sol) polarization free energy of solvation -33.659 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.307 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.036 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.695 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.271 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds