Wall clock time and date at job start Wed Apr 15 2020 11:47:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52997 * 109.47164 * 2 1 4 4 C 1.52997 * 109.47127 * 239.99836 * 2 1 3 5 5 N 1.46503 * 109.47014 * 184.99892 * 4 2 1 6 6 N 1.40589 * 127.38062 * 90.02843 * 5 4 2 7 7 N 1.28904 * 106.83104 * 180.02562 * 6 5 4 8 8 N 1.28416 * 110.34241 * 359.97438 * 7 6 5 9 9 C 1.31547 * 110.50007 * 359.72600 * 8 7 6 10 10 S 1.76197 * 126.45537 * 180.28523 * 9 8 7 11 11 C 1.81007 * 99.99861 * 0.18341 * 10 9 8 12 12 C 1.50697 * 109.47132 * 180.02562 * 11 10 9 13 13 O 1.21300 * 120.00215 * 359.97438 * 12 11 10 14 14 N 1.34778 * 120.00363 * 180.02562 * 12 11 10 15 15 C 1.37091 * 120.00381 * 180.02562 * 14 12 11 16 16 H 1.08003 * 119.99946 * 0.02562 * 15 14 12 17 17 C 1.38950 * 120.00325 * 179.97438 * 15 14 12 18 18 N 1.31414 * 119.99558 * 359.97438 * 17 15 14 19 19 Si 1.86792 * 120.00433 * 179.97438 * 17 15 14 20 20 H 1.48499 * 109.47182 * 0.02562 * 19 17 15 21 21 H 1.48504 * 109.47020 * 120.00121 * 19 17 15 22 22 H 1.48500 * 109.47383 * 240.00159 * 19 17 15 23 23 H 1.09001 * 109.47002 * 59.99738 * 1 2 3 24 24 H 1.08993 * 109.46955 * 180.02562 * 1 2 3 25 25 H 1.09000 * 109.47050 * 300.00004 * 1 2 3 26 26 H 1.09001 * 109.46998 * 119.99705 * 2 1 3 27 27 H 1.09001 * 109.47375 * 300.00034 * 3 2 1 28 28 H 1.09000 * 109.47140 * 60.00051 * 3 2 1 29 29 H 1.09001 * 109.47230 * 179.97438 * 3 2 1 30 30 H 1.08998 * 109.47192 * 305.00392 * 4 2 1 31 31 H 1.08998 * 109.46934 * 65.00238 * 4 2 1 32 32 H 1.08997 * 109.46825 * 300.00350 * 11 10 9 33 33 H 1.09006 * 109.47094 * 60.00076 * 11 10 9 34 34 H 0.97001 * 119.99230 * 359.97438 * 14 12 11 35 35 H 0.97000 * 119.99970 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0401 -0.7213 -1.2492 5 7 3.5001 -0.8264 -1.1905 6 7 4.2590 -1.8679 -0.6284 7 7 5.4991 -1.5571 -0.7934 8 7 5.6000 -0.4301 -1.4006 9 6 4.4078 0.0556 -1.6714 10 16 4.0581 1.5711 -2.4994 11 6 5.7428 2.1530 -2.8147 12 6 5.6909 3.4751 -3.5360 13 8 4.6201 3.9747 -3.8104 14 7 6.8341 4.1021 -3.8771 15 6 6.7868 5.3051 -4.5328 16 1 5.8334 5.7507 -4.7756 17 6 7.9655 5.9518 -4.8841 18 7 9.1255 5.4103 -4.5872 19 14 7.9011 7.5906 -5.7781 20 1 6.4848 7.9821 -5.9927 21 1 8.5824 8.6271 -4.9614 22 1 8.5850 7.4658 -7.0903 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 1.8934 -0.5138 0.8900 27 1 1.6767 1.9563 -0.8900 28 1 1.6767 1.9563 0.8900 29 1 3.1301 1.4425 0.0005 30 1 1.6054 -1.7198 -1.2951 31 1 1.7517 -0.1583 -2.1369 32 1 6.2677 2.2766 -1.8674 33 1 6.2700 1.4236 -3.4297 34 1 7.6904 3.7024 -3.6580 35 1 9.9484 5.8615 -4.8327 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000330511384.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:47:20 Heat of formation + Delta-G solvation = 45.650975 kcal Electronic energy + Delta-G solvation = -19757.147527 eV Core-core repulsion = 16532.101936 eV Total energy + Delta-G solvation = -3225.045591 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 285.100 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -44.01487 -40.17113 -38.19561 -36.09910 -34.52081 -33.54748 -33.31109 -31.00596 -28.65927 -28.05714 -26.72247 -24.66363 -24.28284 -21.59934 -21.34130 -20.10577 -19.17911 -18.00121 -17.81787 -17.73489 -16.54196 -16.31267 -16.20929 -16.02400 -15.33018 -15.16399 -14.71242 -14.40640 -14.09746 -13.90717 -13.55457 -13.45487 -13.15838 -12.97037 -12.91849 -12.74844 -12.44846 -12.38283 -12.22427 -12.09118 -11.88237 -11.84756 -11.68634 -11.58186 -11.32542 -10.64589 -10.11360 -9.02004 -8.51452 -6.01671 -0.40893 -0.25755 0.71725 1.02026 1.06524 1.35387 1.44947 1.58882 1.87007 2.28196 2.97632 3.14354 3.15114 3.56339 3.63850 3.95395 3.96343 4.05527 4.12401 4.14016 4.28623 4.38556 4.55908 4.57900 4.77434 4.81764 5.00666 5.04573 5.14609 5.33443 5.39043 5.41309 5.89202 6.44839 7.02378 7.23381 7.40721 7.91194 8.65514 Molecular weight = 285.10amu Principal moments of inertia in cm(-1) A = 0.028340 B = 0.003655 C = 0.003319 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 987.782309 B = 7659.835553 C = 8434.424569 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.104 4.104 3 C -0.162 4.162 4 C 0.109 3.891 5 N -0.347 5.347 6 N -0.093 5.093 7 N -0.060 5.060 8 N -0.360 5.360 9 C 0.199 3.801 10 S 0.145 5.855 11 C -0.136 4.136 12 C 0.454 3.546 13 O -0.616 6.616 14 N -0.554 5.554 15 C -0.336 4.336 16 H 0.089 0.911 17 C -0.009 4.009 18 N -0.915 5.915 19 Si 0.996 3.004 20 H -0.268 1.268 21 H -0.272 1.272 22 H -0.272 1.272 23 H 0.071 0.929 24 H 0.073 0.927 25 H 0.069 0.931 26 H 0.072 0.928 27 H 0.071 0.929 28 H 0.071 0.929 29 H 0.032 0.968 30 H 0.134 0.866 31 H 0.123 0.877 32 H 0.127 0.873 33 H 0.127 0.873 34 H 0.400 0.600 35 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.657 -10.149 7.062 19.176 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.124 4.124 3 C -0.220 4.220 4 C -0.011 4.011 5 N -0.147 5.147 6 N -0.081 5.081 7 N -0.055 5.055 8 N -0.218 5.218 9 C -0.186 4.186 10 S 0.369 5.631 11 C -0.288 4.288 12 C 0.239 3.761 13 O -0.504 6.504 14 N -0.189 5.189 15 C -0.465 4.465 16 H 0.107 0.893 17 C -0.210 4.210 18 N -0.555 5.555 19 Si 0.819 3.181 20 H -0.192 1.192 21 H -0.197 1.197 22 H -0.197 1.197 23 H 0.090 0.910 24 H 0.092 0.908 25 H 0.088 0.912 26 H 0.091 0.909 27 H 0.090 0.910 28 H 0.090 0.910 29 H 0.052 0.948 30 H 0.152 0.848 31 H 0.141 0.859 32 H 0.145 0.855 33 H 0.145 0.855 34 H 0.234 0.766 35 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -15.307 -10.261 7.106 19.751 hybrid contribution 1.476 0.381 -0.170 1.534 sum -13.831 -9.880 6.937 18.358 Atomic orbital electron populations 1.21755 0.90817 1.03479 1.03618 1.21522 0.98701 0.95971 0.96174 1.22110 1.00166 0.96021 1.03680 1.22827 0.70020 1.06174 1.02094 1.51818 1.10170 1.13071 1.39608 1.82301 0.97636 1.09527 1.18597 1.77799 1.11220 1.06848 1.09660 1.74900 1.20542 1.06505 1.19858 1.28423 0.88566 1.01071 1.00500 1.86341 1.06880 1.05503 1.64373 1.23676 0.99318 0.99207 1.06623 1.19483 0.84663 0.86906 0.85028 1.90539 1.29618 1.69045 1.61182 1.41808 1.07300 1.19658 1.50157 1.19802 0.94627 0.97437 1.34632 0.89309 1.26127 0.93916 1.03065 0.97887 1.69687 0.98157 1.40965 1.46685 0.84819 0.78597 0.76806 0.77839 1.19244 1.19702 1.19693 0.91047 0.90765 0.91176 0.90946 0.90991 0.90951 0.94839 0.84764 0.85902 0.85451 0.85456 0.76614 0.91043 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.15 9.19 71.98 0.66 -0.49 16 2 C -0.10 -1.42 3.13 -10.79 -0.03 -1.45 16 3 C -0.16 -2.86 7.97 71.98 0.57 -2.29 16 4 C 0.11 1.61 5.79 86.38 0.50 2.11 16 5 N -0.35 -8.43 3.49 -347.87 -1.22 -9.64 16 6 N -0.09 -2.71 13.93 37.02 0.52 -2.19 16 7 N -0.06 -2.00 13.38 37.02 0.50 -1.50 16 8 N -0.36 -11.99 11.57 -57.41 -0.66 -12.65 16 9 C 0.20 5.66 6.88 179.84 1.24 6.90 16 10 S 0.14 4.15 18.84 -56.49 -1.06 3.09 16 11 C -0.14 -4.58 5.72 71.23 0.41 -4.17 16 12 C 0.45 20.15 7.80 87.66 0.68 20.83 16 13 O -0.62 -30.92 15.44 -3.09 -0.05 -30.97 16 14 N -0.55 -27.05 5.29 -306.98 -1.62 -28.68 16 15 C -0.34 -18.05 9.68 84.04 0.81 -17.24 16 16 H 0.09 5.02 7.16 -2.91 -0.02 5.00 16 17 C -0.01 -0.46 5.50 84.93 0.47 0.01 16 18 N -0.92 -47.83 13.05 21.66 0.28 -47.55 16 19 Si 1.00 40.93 29.55 68.60 2.03 42.96 16 20 H -0.27 -10.99 7.11 99.48 0.71 -10.29 16 21 H -0.27 -10.77 7.11 99.48 0.71 -10.06 16 22 H -0.27 -10.76 7.11 99.48 0.71 -10.05 16 23 H 0.07 0.52 8.14 -2.39 -0.02 0.50 16 24 H 0.07 0.43 8.14 -2.39 -0.02 0.41 16 25 H 0.07 0.57 8.14 -2.39 -0.02 0.55 16 26 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 27 H 0.07 1.24 7.90 -2.39 -0.02 1.22 16 28 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 29 H 0.03 0.75 5.89 -2.39 -0.01 0.74 16 30 H 0.13 1.36 8.14 -2.39 -0.02 1.34 16 31 H 0.12 1.52 7.84 -2.39 -0.02 1.50 16 32 H 0.13 3.99 8.14 -2.40 -0.02 3.97 16 33 H 0.13 3.97 8.14 -2.39 -0.02 3.95 16 34 H 0.40 18.78 7.90 -92.71 -0.73 18.05 16 35 H 0.28 13.68 8.31 -92.71 -0.77 12.91 16 Total: -1.00 -65.36 317.65 4.41 -60.95 By element: Atomic # 1 Polarization: 21.59 SS G_CDS: 0.39 Total: 21.98 kcal Atomic # 6 Polarization: -1.11 SS G_CDS: 5.31 Total: 4.20 kcal Atomic # 7 Polarization: -100.01 SS G_CDS: -2.21 Total: -102.22 kcal Atomic # 8 Polarization: -30.92 SS G_CDS: -0.05 Total: -30.97 kcal Atomic # 14 Polarization: 40.93 SS G_CDS: 2.03 Total: 42.96 kcal Atomic # 16 Polarization: 4.15 SS G_CDS: -1.06 Total: 3.09 kcal Total: -65.36 4.41 -60.95 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330511384.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.605 kcal (2) G-P(sol) polarization free energy of solvation -65.362 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.243 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.408 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.954 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.651 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds