Wall clock time and date at job start Wed Apr 15 2020 11:47:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52999 * 109.47272 * 2 1 4 4 C 1.53004 * 109.46911 * 180.02562 * 3 2 1 5 5 H 1.08994 * 109.47134 * 304.99854 * 4 3 2 6 6 N 1.46501 * 109.47093 * 65.00312 * 4 3 2 7 7 C 1.34776 * 119.99950 * 204.99923 * 6 4 3 8 8 O 1.21288 * 119.99657 * 359.97438 * 7 6 4 9 9 C 1.50699 * 120.00150 * 179.97438 * 7 6 4 10 10 S 1.81006 * 109.47123 * 179.97438 * 9 7 6 11 11 C 1.76195 * 100.00009 * 179.97438 * 10 9 7 12 12 H 1.08006 * 119.99847 * 0.02562 * 11 10 9 13 13 C 1.38799 * 120.00024 * 179.97438 * 11 10 9 14 14 N 1.31628 * 119.99880 * 0.02562 * 13 11 10 15 15 Si 1.86795 * 119.99953 * 180.02562 * 13 11 10 16 16 H 1.48502 * 109.47343 * 59.99953 * 15 13 11 17 17 H 1.48499 * 109.47215 * 179.97438 * 15 13 11 18 18 H 1.48502 * 109.47417 * 299.99805 * 15 13 11 19 19 C 1.50697 * 109.46632 * 184.99786 * 4 3 2 20 20 N 1.33317 * 126.55417 * 284.99666 * 19 4 3 21 21 N 1.28997 * 107.35563 * 179.74234 * 20 19 4 22 22 N 1.28781 * 108.72759 * 0.43032 * 21 20 19 23 23 H 0.97001 * 125.45314 * 179.83474 * 22 21 20 24 24 N 1.28887 * 109.10175 * 359.56115 * 22 21 20 25 25 H 1.08998 * 109.47691 * 59.99748 * 1 2 3 26 26 H 1.08996 * 109.47293 * 180.02562 * 1 2 3 27 27 H 1.09009 * 109.46579 * 299.99548 * 1 2 3 28 28 H 1.09006 * 109.46639 * 239.99918 * 2 1 3 29 29 H 1.09004 * 109.47356 * 120.00872 * 2 1 3 30 30 H 1.08993 * 109.47193 * 60.00482 * 3 2 1 31 31 H 1.08996 * 109.47019 * 300.00151 * 3 2 1 32 32 H 0.96999 * 120.00240 * 24.99671 * 6 4 3 33 33 H 1.08997 * 109.46781 * 299.99480 * 9 7 6 34 34 H 1.09000 * 109.46766 * 60.00035 * 9 7 6 35 35 H 0.97000 * 120.00026 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5701 1.4424 -0.0006 5 1 3.9337 0.8528 0.8409 6 7 4.0578 0.8589 -1.2528 7 6 5.2797 0.2923 -1.3012 8 8 5.9757 0.2659 -0.3082 9 6 5.7813 -0.3085 -2.5890 10 16 7.4410 -0.9840 -2.3336 11 6 7.7713 -1.6036 -3.9496 12 1 7.0326 -1.4967 -4.7303 13 6 8.9811 -2.2281 -4.2196 14 7 9.8814 -2.3580 -3.2682 15 14 9.3314 -2.8844 -5.9330 16 1 9.2777 -1.7683 -6.9111 17 1 10.6820 -3.5012 -5.9602 18 1 8.3134 -3.9049 -6.2900 19 6 4.0724 2.8577 0.1231 20 7 4.0754 3.7858 -0.8340 21 7 4.5801 4.8594 -0.3274 22 7 4.8965 4.6286 0.8994 23 1 5.2974 5.2695 1.5072 24 7 4.5899 3.4114 1.1922 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3633 0.5138 0.8901 28 1 1.8933 -0.5139 -0.8901 29 1 1.8934 -0.5140 0.8899 30 1 1.6768 1.9563 0.8900 31 1 1.6767 1.9563 -0.8899 32 1 3.5014 0.8803 -2.0470 33 1 5.1086 -1.1061 -2.9040 34 1 5.8175 0.4618 -3.3594 35 1 10.7267 -2.7947 -3.4568 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000343722247.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:47:23 Heat of formation + Delta-G solvation = 42.384684 kcal Electronic energy + Delta-G solvation = -19767.541322 eV Core-core repulsion = 16542.354094 eV Total energy + Delta-G solvation = -3225.187228 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 285.100 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -45.51133 -40.84676 -37.78365 -35.21416 -34.58779 -34.50019 -34.01332 -31.39531 -29.33956 -27.64110 -25.91295 -25.60534 -23.06216 -22.08994 -21.85906 -20.09713 -19.84480 -18.14841 -17.92919 -17.28932 -16.96144 -16.86808 -16.08899 -15.86192 -15.44278 -14.97864 -14.89309 -14.47911 -14.33156 -13.60472 -13.55295 -13.16297 -13.15844 -12.86074 -12.70160 -12.61806 -12.49147 -12.32580 -12.12236 -11.92197 -11.74830 -11.54445 -11.34654 -11.12060 -10.96595 -10.44021 -10.27880 -8.66107 -8.33880 -6.11890 0.10056 0.91975 1.27610 1.38421 1.44791 1.47603 1.57030 1.61992 2.20569 2.28656 2.78922 3.00488 3.28372 3.36496 3.73936 3.91641 4.03281 4.13183 4.30958 4.42788 4.46127 4.52548 4.57401 4.67425 4.80141 4.95020 5.05303 5.25236 5.32626 5.41532 5.42699 5.53234 5.61363 6.20525 6.43052 7.07541 7.15005 7.18023 8.75144 Molecular weight = 285.10amu Principal moments of inertia in cm(-1) A = 0.018630 B = 0.003948 C = 0.003483 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1502.611162 B = 7090.141360 C = 8036.526703 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.124 4.124 3 C -0.106 4.106 4 C 0.245 3.755 5 H 0.105 0.895 6 N -0.697 5.697 7 C 0.539 3.461 8 O -0.558 6.558 9 C -0.129 4.129 10 S -0.150 6.150 11 C -0.547 4.547 12 H 0.083 0.917 13 C 0.015 3.985 14 N -0.912 5.912 15 Si 0.997 3.003 16 H -0.263 1.263 17 H -0.279 1.279 18 H -0.260 1.260 19 C 0.154 3.846 20 N -0.286 5.286 21 N -0.063 5.063 22 N -0.207 5.207 23 H 0.491 0.509 24 N -0.300 5.300 25 H 0.061 0.939 26 H 0.057 0.943 27 H 0.058 0.942 28 H 0.067 0.933 29 H 0.062 0.938 30 H 0.091 0.909 31 H 0.089 0.911 32 H 0.422 0.578 33 H 0.117 0.883 34 H 0.106 0.894 35 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.669 10.815 6.342 23.325 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.161 4.161 3 C -0.145 4.145 4 C 0.136 3.864 5 H 0.123 0.877 6 N -0.352 5.352 7 C 0.325 3.675 8 O -0.435 6.435 9 C -0.280 4.280 10 S 0.077 5.923 11 C -0.695 4.695 12 H 0.102 0.898 13 C -0.190 4.190 14 N -0.549 5.549 15 Si 0.819 3.181 16 H -0.188 1.188 17 H -0.204 1.204 18 H -0.185 1.185 19 C -0.131 4.131 20 N -0.158 5.158 21 N -0.059 5.059 22 N -0.058 5.058 23 H 0.350 0.650 24 N -0.152 5.152 25 H 0.080 0.920 26 H 0.076 0.924 27 H 0.077 0.923 28 H 0.086 0.914 29 H 0.080 0.920 30 H 0.110 0.890 31 H 0.108 0.892 32 H 0.260 0.740 33 H 0.135 0.865 34 H 0.124 0.876 35 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -18.245 11.292 7.811 22.834 hybrid contribution 0.039 -0.262 -1.588 1.610 sum -18.207 11.030 6.223 22.178 Atomic orbital electron populations 1.21734 0.94288 1.02193 1.02384 1.21525 0.96938 0.94820 1.02859 1.21852 0.88272 0.99406 1.04981 1.19247 0.96067 0.82109 0.88958 0.87739 1.45683 1.17035 1.58472 1.14033 1.20140 0.81320 0.76900 0.89143 1.90711 1.56847 1.58437 1.37526 1.23362 1.01903 1.04317 0.98423 1.85554 1.14144 1.74521 1.18102 1.23182 1.05746 1.44070 0.96473 0.89847 1.26110 0.94640 0.95384 1.02875 1.70176 1.07662 1.41915 1.35102 0.85018 0.77684 0.78726 0.76670 1.18801 1.20438 1.18459 1.26467 1.00281 1.00597 0.85728 1.75784 1.17344 0.96468 1.26233 1.78867 1.12186 1.20207 0.94606 1.47840 1.39106 1.08901 1.09929 0.65048 1.74690 1.17693 0.95214 1.27640 0.91981 0.92355 0.92254 0.91424 0.91960 0.89007 0.89198 0.73971 0.86480 0.87596 0.92019 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.63 9.91 71.98 0.71 -0.92 16 2 C -0.12 -1.71 5.82 30.59 0.18 -1.53 16 3 C -0.11 -1.56 4.74 30.60 0.14 -1.42 16 4 C 0.25 5.63 2.51 44.25 0.11 5.75 16 5 H 0.10 2.75 7.58 -2.39 -0.02 2.73 16 6 N -0.70 -17.57 4.52 -446.10 -2.01 -19.59 16 7 C 0.54 19.70 7.80 87.66 0.68 20.38 16 8 O -0.56 -25.57 15.53 -3.05 -0.05 -25.62 16 9 C -0.13 -5.09 6.16 71.24 0.44 -4.65 16 10 S -0.15 -8.36 20.57 -56.49 -1.16 -9.53 16 11 C -0.55 -31.29 9.50 67.95 0.65 -30.65 16 12 H 0.08 4.41 7.80 -2.91 -0.02 4.39 16 13 C 0.01 0.84 5.49 84.86 0.47 1.30 16 14 N -0.91 -56.25 13.22 21.65 0.29 -55.97 16 15 Si 1.00 43.66 29.55 68.60 2.03 45.69 16 16 H -0.26 -10.99 7.11 99.48 0.71 -10.28 16 17 H -0.28 -11.93 7.11 99.48 0.71 -11.22 16 18 H -0.26 -10.74 7.11 99.48 0.71 -10.03 16 19 C 0.15 4.04 7.16 138.55 0.99 5.03 16 20 N -0.29 -7.82 12.50 -51.26 -0.64 -8.47 16 21 N -0.06 -1.56 13.48 37.02 0.50 -1.06 16 22 N -0.21 -4.05 7.91 37.00 0.29 -3.76 16 23 H 0.49 4.66 8.96 -347.67 -3.12 1.54 16 24 N -0.30 -7.50 12.36 -51.20 -0.63 -8.13 16 25 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 26 H 0.06 0.63 8.14 -2.39 -0.02 0.62 16 27 H 0.06 0.59 8.14 -2.38 -0.02 0.57 16 28 H 0.07 0.98 7.75 -2.38 -0.02 0.97 16 29 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 30 H 0.09 1.19 8.14 -2.39 -0.02 1.17 16 31 H 0.09 1.16 8.14 -2.39 -0.02 1.15 16 32 H 0.42 7.88 8.60 -92.71 -0.80 7.08 16 33 H 0.12 4.04 8.14 -2.40 -0.02 4.02 16 34 H 0.11 3.89 8.14 -2.40 -0.02 3.87 16 35 H 0.27 15.54 8.31 -92.71 -0.77 14.77 16 Total: -1.00 -80.47 324.21 0.20 -80.27 By element: Atomic # 1 Polarization: 15.64 SS G_CDS: -2.78 Total: 12.86 kcal Atomic # 6 Polarization: -11.08 SS G_CDS: 4.37 Total: -6.70 kcal Atomic # 7 Polarization: -94.76 SS G_CDS: -2.21 Total: -96.97 kcal Atomic # 8 Polarization: -25.57 SS G_CDS: -0.05 Total: -25.62 kcal Atomic # 14 Polarization: 43.66 SS G_CDS: 2.03 Total: 45.69 kcal Atomic # 16 Polarization: -8.36 SS G_CDS: -1.16 Total: -9.53 kcal Total: -80.47 0.20 -80.27 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343722247.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.655 kcal (2) G-P(sol) polarization free energy of solvation -80.474 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.181 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.204 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.270 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.385 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds