Wall clock time and date at job start Wed Apr 15 2020 11:47:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52995 * 109.47304 * 2 1 4 4 C 1.53003 * 109.47190 * 179.97438 * 3 2 1 5 5 H 1.09001 * 109.47121 * 55.00181 * 4 3 2 6 6 N 1.46494 * 109.47259 * 294.99795 * 4 3 2 7 7 C 1.34777 * 120.00122 * 154.99714 * 6 4 3 8 8 O 1.21278 * 119.99972 * 0.02562 * 7 6 4 9 9 C 1.50701 * 120.00223 * 180.02562 * 7 6 4 10 10 S 1.80998 * 109.47362 * 180.02562 * 9 7 6 11 11 C 1.76203 * 99.99963 * 179.97438 * 10 9 7 12 12 H 1.07997 * 120.00083 * 359.97438 * 11 10 9 13 13 C 1.38798 * 119.99490 * 179.97438 * 11 10 9 14 14 N 1.31630 * 119.99659 * 180.02562 * 13 11 10 15 15 Si 1.86793 * 120.00381 * 359.97438 * 13 11 10 16 16 H 1.48500 * 109.46946 * 90.00162 * 15 13 11 17 17 H 1.48501 * 109.47298 * 210.00097 * 15 13 11 18 18 H 1.48498 * 109.47171 * 330.00337 * 15 13 11 19 19 C 1.50702 * 109.47060 * 174.99845 * 4 3 2 20 20 N 1.33321 * 126.54985 * 74.69257 * 19 4 3 21 21 N 1.28993 * 107.35299 * 180.26226 * 20 19 4 22 22 N 1.28782 * 108.72863 * 359.97438 * 21 20 19 23 23 H 0.97003 * 125.45096 * 180.02562 * 22 21 20 24 24 N 1.28878 * 109.10297 * 0.02562 * 22 21 20 25 25 H 1.09004 * 109.47026 * 59.99989 * 1 2 3 26 26 H 1.08995 * 109.47682 * 180.02562 * 1 2 3 27 27 H 1.09008 * 109.46999 * 300.00188 * 1 2 3 28 28 H 1.08994 * 109.47106 * 239.99663 * 2 1 3 29 29 H 1.09004 * 109.47026 * 120.00011 * 2 1 3 30 30 H 1.09002 * 109.47649 * 59.99849 * 3 2 1 31 31 H 1.08997 * 109.47223 * 299.99591 * 3 2 1 32 32 H 0.97002 * 120.00341 * 335.00317 * 6 4 3 33 33 H 1.09001 * 109.47398 * 300.00363 * 9 7 6 34 34 H 1.08997 * 109.47139 * 59.99930 * 9 7 6 35 35 H 0.97001 * 120.00347 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5700 1.4424 0.0006 5 1 3.9337 0.8528 -0.8410 6 7 4.0578 0.8589 1.2527 7 6 5.2797 0.2923 1.3011 8 8 5.9756 0.2659 0.3082 9 6 5.7813 -0.3084 2.5889 10 16 7.4410 -0.9839 2.3335 11 6 7.7719 -1.6022 3.9500 12 1 7.0336 -1.4947 4.7308 13 6 8.9814 -2.2273 4.2197 14 7 9.2284 -2.6896 5.4272 15 14 10.2581 -2.4138 2.8690 16 1 11.1543 -1.2297 2.8681 17 1 11.0591 -3.6406 3.1109 18 1 9.5759 -2.5192 1.5542 19 6 4.0724 2.8578 -0.1232 20 7 4.0701 3.7876 0.8322 21 7 4.5768 4.8605 0.3262 22 7 4.8917 4.6301 -0.9010 23 1 5.2918 5.2713 -1.5091 24 7 4.5901 3.4114 -1.1922 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 1.8933 -0.5139 -0.8899 29 1 1.8933 -0.5139 0.8900 30 1 1.6767 1.9564 0.8900 31 1 1.6767 1.9563 -0.8900 32 1 3.5014 0.8803 2.0470 33 1 5.8176 0.4618 3.3594 34 1 5.1086 -1.1060 2.9041 35 1 10.0738 -3.1261 5.6159 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000343722248.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:47:26 Heat of formation + Delta-G solvation = 70.620285 kcal Electronic energy + Delta-G solvation = -19818.728765 eV Core-core repulsion = 16594.765924 eV Total energy + Delta-G solvation = -3223.962841 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 285.100 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -44.57582 -39.60096 -36.78685 -34.30693 -33.65889 -32.94863 -32.43123 -30.23114 -28.27285 -25.61772 -25.11238 -24.66125 -22.16151 -21.34274 -20.68211 -19.16523 -17.90351 -17.19860 -16.59143 -16.14714 -15.90185 -15.11115 -14.94983 -14.51917 -14.06679 -13.94662 -13.76870 -13.29166 -12.83755 -12.76826 -12.40867 -12.24414 -11.88862 -11.77230 -11.39543 -11.29945 -11.26563 -11.15631 -11.00910 -10.94708 -10.63837 -10.44194 -9.85646 -9.58486 -9.28143 -8.99577 -8.50198 -6.91561 -6.28265 -4.00022 1.02782 1.92445 2.16982 2.74337 2.88285 3.25828 3.33553 3.50371 3.61482 3.71520 4.28431 4.33469 4.51455 4.67860 4.72607 4.77071 5.10788 5.12970 5.21332 5.26228 5.33490 5.44003 5.49193 5.59570 5.68171 5.77440 5.83745 5.93675 6.02659 6.06906 6.28493 6.39124 7.52563 7.94907 8.11306 8.40849 8.42960 9.17923 10.81031 Molecular weight = 285.10amu Principal moments of inertia in cm(-1) A = 0.018251 B = 0.004225 C = 0.003693 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1533.760061 B = 6625.323180 C = 7581.093466 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.124 4.124 3 C -0.120 4.120 4 C 0.246 3.754 5 H 0.119 0.881 6 N -0.721 5.721 7 C 0.533 3.467 8 O -0.514 6.514 9 C -0.123 4.123 10 S -0.142 6.142 11 C -0.521 4.521 12 H 0.089 0.911 13 C 0.096 3.904 14 N -0.880 5.880 15 Si 0.856 3.144 16 H -0.268 1.268 17 H -0.274 1.274 18 H -0.235 1.235 19 C 0.164 3.836 20 N -0.265 5.265 21 N -0.056 5.056 22 N -0.232 5.232 23 H 0.473 0.527 24 N -0.288 5.288 25 H 0.053 0.947 26 H 0.056 0.944 27 H 0.055 0.945 28 H 0.067 0.933 29 H 0.071 0.929 30 H 0.079 0.921 31 H 0.080 0.920 32 H 0.407 0.593 33 H 0.099 0.901 34 H 0.100 0.900 35 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.709 11.299 -12.796 23.887 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.162 4.162 3 C -0.159 4.159 4 C 0.137 3.863 5 H 0.136 0.864 6 N -0.376 5.376 7 C 0.320 3.680 8 O -0.388 6.388 9 C -0.274 4.274 10 S 0.084 5.916 11 C -0.668 4.668 12 H 0.107 0.893 13 C -0.112 4.112 14 N -0.517 5.517 15 Si 0.681 3.319 16 H -0.193 1.193 17 H -0.199 1.199 18 H -0.159 1.159 19 C -0.121 4.121 20 N -0.138 5.138 21 N -0.051 5.051 22 N -0.078 5.078 23 H 0.327 0.673 24 N -0.140 5.140 25 H 0.072 0.928 26 H 0.075 0.925 27 H 0.074 0.926 28 H 0.086 0.914 29 H 0.090 0.910 30 H 0.097 0.903 31 H 0.098 0.902 32 H 0.242 0.758 33 H 0.117 0.883 34 H 0.119 0.881 35 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -15.295 11.706 -14.089 23.864 hybrid contribution -0.031 0.008 0.701 0.701 sum -15.327 11.714 -13.388 23.481 Atomic orbital electron populations 1.21758 0.95448 1.01907 1.01783 1.21525 0.96007 0.95380 1.03283 1.21889 0.91255 0.98783 1.03924 1.19043 0.93946 0.83049 0.90305 0.86365 1.45930 1.18721 1.60148 1.12784 1.20403 0.80374 0.76869 0.90381 1.90716 1.55226 1.56496 1.36335 1.23270 1.03237 1.03659 0.97192 1.84783 1.13420 1.74624 1.18796 1.22315 1.06564 1.43670 0.94279 0.89304 1.24699 0.97370 0.93616 0.95545 1.69937 1.24728 1.37300 1.19714 0.86748 0.82503 0.78657 0.84020 1.19280 1.19908 1.15932 1.26259 1.00010 1.00112 0.85703 1.75824 1.16241 0.96058 1.25664 1.78946 1.11872 1.20467 0.93806 1.47800 1.40631 1.09130 1.10217 0.67320 1.74709 1.17590 0.94290 1.27395 0.92835 0.92454 0.92604 0.91375 0.91015 0.90258 0.90179 0.75753 0.88304 0.88136 0.91943 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.96 9.91 37.15 0.37 -0.60 16 2 C -0.12 -0.92 5.82 -26.74 -0.16 -1.08 16 3 C -0.12 -0.95 4.74 -26.73 -0.13 -1.08 16 4 C 0.25 2.81 2.51 -69.08 -0.17 2.64 16 5 H 0.12 1.48 7.58 -51.93 -0.39 1.09 16 6 N -0.72 -9.06 4.52 -54.93 -0.25 -9.31 16 7 C 0.53 9.33 7.80 -10.98 -0.09 9.25 16 8 O -0.51 -10.93 15.52 5.56 0.09 -10.84 16 9 C -0.12 -2.36 6.16 36.01 0.22 -2.14 16 10 S -0.14 -3.62 18.55 -107.50 -1.99 -5.61 16 11 C -0.52 -15.03 10.04 30.94 0.31 -14.72 16 12 H 0.09 2.67 8.03 -52.49 -0.42 2.25 16 13 C 0.10 2.83 5.50 -17.43 -0.10 2.73 16 14 N -0.88 -26.64 13.97 55.49 0.78 -25.86 16 15 Si 0.86 21.87 27.74 -169.99 -4.71 17.16 16 16 H -0.27 -6.79 7.11 56.52 0.40 -6.39 16 17 H -0.27 -6.72 7.11 56.52 0.40 -6.32 16 18 H -0.24 -5.99 6.74 56.52 0.38 -5.61 16 19 C 0.16 2.14 7.17 -156.62 -1.12 1.02 16 20 N -0.26 -3.66 12.50 32.45 0.41 -3.26 16 21 N -0.06 -0.69 13.48 60.35 0.81 0.12 16 22 N -0.23 -2.30 7.91 60.34 0.48 -1.82 16 23 H 0.47 2.35 8.96 -340.52 -3.05 -0.70 16 24 N -0.29 -3.57 12.36 32.47 0.40 -3.17 16 25 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 26 H 0.06 0.36 8.14 -51.93 -0.42 -0.07 16 27 H 0.05 0.34 8.14 -51.92 -0.42 -0.09 16 28 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 29 H 0.07 0.56 7.75 -51.93 -0.40 0.16 16 30 H 0.08 0.60 8.14 -51.93 -0.42 0.17 16 31 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.41 4.03 8.60 -40.82 -0.35 3.68 16 33 H 0.10 1.81 8.14 -51.91 -0.42 1.39 16 34 H 0.10 1.75 8.14 -51.92 -0.42 1.33 16 35 H 0.27 7.61 8.31 -40.82 -0.34 7.27 16 LS Contribution 321.52 15.07 4.85 4.85 Total: -1.00 -36.24 321.52 -7.17 -43.40 By element: Atomic # 1 Polarization: 5.47 SS G_CDS: -7.16 Total: -1.69 kcal Atomic # 6 Polarization: -3.12 SS G_CDS: -0.86 Total: -3.97 kcal Atomic # 7 Polarization: -45.92 SS G_CDS: 2.63 Total: -43.29 kcal Atomic # 8 Polarization: -10.93 SS G_CDS: 0.09 Total: -10.84 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -4.71 Total: 17.16 kcal Atomic # 16 Polarization: -3.62 SS G_CDS: -1.99 Total: -5.61 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -36.24 -7.17 -43.40 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343722248.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.025 kcal (2) G-P(sol) polarization free energy of solvation -36.235 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.789 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.169 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.405 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.620 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds