Wall clock time and date at job start Wed Apr 15 2020 11:47:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52995 * 109.47304 * 2 1 4 4 C 1.53003 * 109.47190 * 179.97438 * 3 2 1 5 5 H 1.09001 * 109.47121 * 55.00181 * 4 3 2 6 6 N 1.46494 * 109.47259 * 294.99795 * 4 3 2 7 7 C 1.34777 * 120.00122 * 154.99714 * 6 4 3 8 8 O 1.21278 * 119.99972 * 0.02562 * 7 6 4 9 9 C 1.50701 * 120.00223 * 180.02562 * 7 6 4 10 10 S 1.80998 * 109.47362 * 180.02562 * 9 7 6 11 11 C 1.76203 * 99.99963 * 179.97438 * 10 9 7 12 12 H 1.07997 * 120.00083 * 359.97438 * 11 10 9 13 13 C 1.38798 * 119.99490 * 179.97438 * 11 10 9 14 14 N 1.31630 * 119.99659 * 180.02562 * 13 11 10 15 15 Si 1.86793 * 120.00381 * 359.97438 * 13 11 10 16 16 H 1.48500 * 109.46946 * 90.00162 * 15 13 11 17 17 H 1.48501 * 109.47298 * 210.00097 * 15 13 11 18 18 H 1.48498 * 109.47171 * 330.00337 * 15 13 11 19 19 C 1.50702 * 109.47060 * 174.99845 * 4 3 2 20 20 N 1.33321 * 126.54985 * 74.69257 * 19 4 3 21 21 N 1.28993 * 107.35299 * 180.26226 * 20 19 4 22 22 N 1.28782 * 108.72863 * 359.97438 * 21 20 19 23 23 H 0.97003 * 125.45096 * 180.02562 * 22 21 20 24 24 N 1.28878 * 109.10297 * 0.02562 * 22 21 20 25 25 H 1.09004 * 109.47026 * 59.99989 * 1 2 3 26 26 H 1.08995 * 109.47682 * 180.02562 * 1 2 3 27 27 H 1.09008 * 109.46999 * 300.00188 * 1 2 3 28 28 H 1.08994 * 109.47106 * 239.99663 * 2 1 3 29 29 H 1.09004 * 109.47026 * 120.00011 * 2 1 3 30 30 H 1.09002 * 109.47649 * 59.99849 * 3 2 1 31 31 H 1.08997 * 109.47223 * 299.99591 * 3 2 1 32 32 H 0.97002 * 120.00341 * 335.00317 * 6 4 3 33 33 H 1.09001 * 109.47398 * 300.00363 * 9 7 6 34 34 H 1.08997 * 109.47139 * 59.99930 * 9 7 6 35 35 H 0.97001 * 120.00347 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5700 1.4424 0.0006 5 1 3.9337 0.8528 -0.8410 6 7 4.0578 0.8589 1.2527 7 6 5.2797 0.2923 1.3011 8 8 5.9756 0.2659 0.3082 9 6 5.7813 -0.3084 2.5889 10 16 7.4410 -0.9839 2.3335 11 6 7.7719 -1.6022 3.9500 12 1 7.0336 -1.4947 4.7308 13 6 8.9814 -2.2273 4.2197 14 7 9.2284 -2.6896 5.4272 15 14 10.2581 -2.4138 2.8690 16 1 11.1543 -1.2297 2.8681 17 1 11.0591 -3.6406 3.1109 18 1 9.5759 -2.5192 1.5542 19 6 4.0724 2.8578 -0.1232 20 7 4.0701 3.7876 0.8322 21 7 4.5768 4.8605 0.3262 22 7 4.8917 4.6301 -0.9010 23 1 5.2918 5.2713 -1.5091 24 7 4.5901 3.4114 -1.1922 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 1.8933 -0.5139 -0.8899 29 1 1.8933 -0.5139 0.8900 30 1 1.6767 1.9564 0.8900 31 1 1.6767 1.9563 -0.8900 32 1 3.5014 0.8803 2.0470 33 1 5.8176 0.4618 3.3594 34 1 5.1086 -1.1060 2.9041 35 1 10.0738 -3.1261 5.6159 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000343722248.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:47:25 Heat of formation + Delta-G solvation = 42.884728 kcal Electronic energy + Delta-G solvation = -19819.931469 eV Core-core repulsion = 16594.765924 eV Total energy + Delta-G solvation = -3225.165545 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 285.100 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -45.51492 -40.89268 -37.80520 -35.21620 -34.67621 -34.51861 -34.02649 -31.45129 -29.37226 -27.84160 -25.92003 -25.60910 -23.08119 -22.11664 -21.87869 -20.10236 -19.90278 -18.15512 -17.99105 -17.34765 -17.06323 -16.97624 -16.08889 -15.83346 -15.40736 -15.02243 -14.96907 -14.82839 -14.34793 -13.69488 -13.56900 -13.34687 -13.16888 -13.02637 -12.71183 -12.64749 -12.49449 -12.32373 -12.12332 -11.92491 -11.86420 -11.54967 -11.35344 -11.17339 -11.01719 -10.54075 -10.46893 -8.99555 -8.51280 -6.21982 0.09993 0.87863 1.02833 1.30682 1.36183 1.46156 1.54607 1.59089 2.16057 2.25094 2.70534 2.78501 2.87128 3.32430 3.70922 3.85181 3.99965 4.12952 4.23880 4.42174 4.45564 4.48442 4.56784 4.67025 4.79382 4.95084 5.05005 5.22916 5.32659 5.40871 5.53093 5.61276 5.71306 6.12350 6.38438 6.93993 7.10538 7.16504 8.61255 Molecular weight = 285.10amu Principal moments of inertia in cm(-1) A = 0.018251 B = 0.004225 C = 0.003693 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1533.760061 B = 6625.323180 C = 7581.093466 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.123 4.123 3 C -0.107 4.107 4 C 0.246 3.754 5 H 0.108 0.892 6 N -0.697 5.697 7 C 0.540 3.460 8 O -0.555 6.555 9 C -0.111 4.111 10 S -0.175 6.175 11 C -0.528 4.528 12 H 0.063 0.937 13 C 0.047 3.953 14 N -0.917 5.917 15 Si 0.913 3.087 16 H -0.265 1.265 17 H -0.258 1.258 18 H -0.236 1.236 19 C 0.153 3.847 20 N -0.286 5.286 21 N -0.064 5.064 22 N -0.207 5.207 23 H 0.491 0.509 24 N -0.298 5.298 25 H 0.059 0.941 26 H 0.057 0.943 27 H 0.060 0.940 28 H 0.063 0.937 29 H 0.067 0.933 30 H 0.088 0.912 31 H 0.092 0.908 32 H 0.422 0.578 33 H 0.110 0.890 34 H 0.121 0.879 35 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.830 12.076 -13.982 25.676 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.161 4.161 3 C -0.146 4.146 4 C 0.137 3.863 5 H 0.126 0.874 6 N -0.352 5.352 7 C 0.326 3.674 8 O -0.432 6.432 9 C -0.262 4.262 10 S 0.051 5.949 11 C -0.676 4.676 12 H 0.081 0.919 13 C -0.158 4.158 14 N -0.555 5.555 15 Si 0.735 3.265 16 H -0.190 1.190 17 H -0.182 1.182 18 H -0.160 1.160 19 C -0.131 4.131 20 N -0.159 5.159 21 N -0.059 5.059 22 N -0.058 5.058 23 H 0.350 0.650 24 N -0.151 5.151 25 H 0.078 0.922 26 H 0.076 0.924 27 H 0.079 0.921 28 H 0.082 0.918 29 H 0.086 0.914 30 H 0.107 0.893 31 H 0.110 0.890 32 H 0.261 0.739 33 H 0.128 0.872 34 H 0.139 0.861 35 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -16.462 12.515 -15.260 25.700 hybrid contribution 0.189 -0.118 1.055 1.078 sum -16.273 12.397 -14.205 24.905 Atomic orbital electron populations 1.21738 0.94419 1.02175 1.02349 1.21521 0.96857 0.94824 1.02915 1.21858 0.88377 0.99404 1.04972 1.19256 0.96000 0.82139 0.88885 0.87405 1.45677 1.17011 1.58346 1.14164 1.20025 0.81440 0.76987 0.88934 1.90706 1.56743 1.58465 1.37291 1.23260 0.99601 1.04508 0.98809 1.84690 1.18468 1.75156 1.16558 1.22464 1.06149 1.43566 0.95431 0.91862 1.25535 0.99315 0.93388 0.97588 1.70015 1.25725 1.38295 1.21465 0.85891 0.80147 0.79225 0.81254 1.18968 1.18224 1.15969 1.26462 1.00300 1.00577 0.85810 1.75800 1.17242 0.96491 1.26340 1.78882 1.12174 1.20270 0.94587 1.47850 1.39171 1.08846 1.09889 0.65037 1.74681 1.17776 0.95081 1.27546 0.92238 0.92381 0.92090 0.91799 0.91417 0.89306 0.88976 0.73922 0.87214 0.86065 0.91368 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.55 9.91 71.98 0.71 -0.84 16 2 C -0.12 -1.57 5.82 30.59 0.18 -1.39 16 3 C -0.11 -1.45 4.74 30.59 0.14 -1.31 16 4 C 0.25 5.21 2.51 44.25 0.11 5.32 16 5 H 0.11 2.58 7.58 -2.39 -0.02 2.56 16 6 N -0.70 -16.28 4.52 -446.10 -2.01 -18.30 16 7 C 0.54 18.22 7.80 87.66 0.68 18.90 16 8 O -0.55 -23.21 15.52 -3.02 -0.05 -23.26 16 9 C -0.11 -4.14 6.16 71.24 0.44 -3.70 16 10 S -0.18 -8.84 18.55 -56.49 -1.05 -9.89 16 11 C -0.53 -30.79 10.04 67.95 0.68 -30.11 16 12 H 0.06 3.88 8.03 -2.91 -0.02 3.86 16 13 C 0.05 2.77 5.50 84.86 0.47 3.24 16 14 N -0.92 -55.98 13.97 21.65 0.30 -55.67 16 15 Si 0.91 45.11 27.74 68.60 1.90 47.01 16 16 H -0.26 -12.85 7.11 99.48 0.71 -12.14 16 17 H -0.26 -11.92 7.11 99.48 0.71 -11.22 16 18 H -0.24 -11.59 6.74 99.48 0.67 -10.92 16 19 C 0.15 3.76 7.17 138.55 0.99 4.75 16 20 N -0.29 -7.46 12.50 -51.26 -0.64 -8.10 16 21 N -0.06 -1.49 13.48 37.02 0.50 -0.99 16 22 N -0.21 -3.74 7.91 37.00 0.29 -3.44 16 23 H 0.49 3.95 8.96 -347.67 -3.12 0.84 16 24 N -0.30 -6.92 12.36 -51.19 -0.63 -7.56 16 25 H 0.06 0.55 8.14 -2.39 -0.02 0.53 16 26 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 27 H 0.06 0.58 8.14 -2.38 -0.02 0.56 16 28 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 29 H 0.07 0.92 7.75 -2.39 -0.02 0.90 16 30 H 0.09 1.08 8.14 -2.39 -0.02 1.06 16 31 H 0.09 1.09 8.14 -2.39 -0.02 1.07 16 32 H 0.42 7.34 8.60 -92.71 -0.80 6.54 16 33 H 0.11 3.88 8.14 -2.40 -0.02 3.86 16 34 H 0.12 4.03 8.14 -2.40 -0.02 4.01 16 35 H 0.28 15.62 8.31 -92.71 -0.77 14.85 16 Total: -1.00 -77.74 321.52 0.21 -77.53 By element: Atomic # 1 Polarization: 10.62 SS G_CDS: -2.82 Total: 7.81 kcal Atomic # 6 Polarization: -9.55 SS G_CDS: 4.41 Total: -5.14 kcal Atomic # 7 Polarization: -91.87 SS G_CDS: -2.19 Total: -94.06 kcal Atomic # 8 Polarization: -23.21 SS G_CDS: -0.05 Total: -23.26 kcal Atomic # 14 Polarization: 45.11 SS G_CDS: 1.90 Total: 47.01 kcal Atomic # 16 Polarization: -8.84 SS G_CDS: -1.05 Total: -9.89 kcal Total: -77.74 0.21 -77.53 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343722248.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.414 kcal (2) G-P(sol) polarization free energy of solvation -77.740 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.674 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.210 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.529 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.885 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds