Wall clock time and date at job start Wed Apr 15 2020 11:47:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08999 * 109.46883 * 2 1 4 4 N 1.46907 * 109.46967 * 119.99717 * 2 1 3 5 5 C 1.46902 * 111.00225 * 275.00520 * 4 2 1 6 6 C 1.50693 * 109.47464 * 180.02562 * 5 4 2 7 7 O 1.21297 * 119.99550 * 359.97438 * 6 5 4 8 8 N 1.34770 * 120.00333 * 179.97438 * 6 5 4 9 9 C 1.37098 * 120.00344 * 179.97438 * 8 6 5 10 10 H 1.08007 * 119.99674 * 0.02562 * 9 8 6 11 11 C 1.38946 * 120.00390 * 180.02562 * 9 8 6 12 12 N 1.31410 * 119.99573 * 359.97438 * 11 9 8 13 13 Si 1.86800 * 120.00403 * 180.02562 * 11 9 8 14 14 H 1.48504 * 109.46619 * 359.97438 * 13 11 9 15 15 H 1.48501 * 109.47386 * 119.99741 * 13 11 9 16 16 H 1.48499 * 109.47007 * 240.00131 * 13 11 9 17 17 C 1.50693 * 109.47742 * 239.99716 * 2 1 3 18 18 C 1.38822 * 120.80901 * 104.99622 * 17 2 1 19 19 F 1.35096 * 120.42983 * 359.96511 * 18 17 2 20 20 C 1.38451 * 119.14051 * 179.97438 * 18 17 2 21 21 N 1.31854 * 120.78345 * 359.97438 * 20 18 17 22 22 C 1.31844 * 121.77138 * 0.02562 * 21 20 18 23 23 C 1.38453 * 120.78408 * 359.97438 * 22 21 20 24 24 F 1.35101 * 120.42745 * 179.97438 * 23 22 21 25 25 H 1.09000 * 109.46576 * 60.00560 * 1 2 3 26 26 H 1.08997 * 109.46685 * 179.97438 * 1 2 3 27 27 H 1.08995 * 109.47316 * 300.00176 * 1 2 3 28 28 H 1.00899 * 110.99675 * 151.04835 * 4 2 1 29 29 H 1.09003 * 109.46655 * 300.00047 * 5 4 2 30 30 H 1.08997 * 109.47090 * 59.99639 * 5 4 2 31 31 H 0.97004 * 120.00009 * 0.02562 * 8 6 5 32 32 H 0.97005 * 119.99896 * 180.02562 * 12 11 9 33 33 H 1.07998 * 119.60963 * 180.02562 * 20 18 17 34 34 H 1.08004 * 119.60382 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0197 -0.6925 1.1995 5 6 2.0824 0.2226 2.3470 6 6 2.5884 -0.5214 3.5559 7 8 2.8687 -1.6984 3.4700 8 7 2.7294 0.1209 4.7322 9 6 3.1892 -0.5561 5.8322 10 1 3.4389 -1.6041 5.7558 11 6 3.3341 0.1060 7.0451 12 7 3.0308 1.3812 7.1379 13 14 3.9613 -0.8163 8.5436 14 1 4.2298 -2.2303 8.1779 15 1 5.2148 -0.1827 9.0260 16 1 2.9375 -0.7692 9.6182 17 6 2.0325 -0.7104 -1.2303 18 6 2.5604 0.0032 -2.2976 19 9 2.6320 1.3515 -2.2508 20 6 3.0125 -0.6847 -3.4108 21 7 2.9464 -2.0005 -3.4639 22 6 2.4515 -2.7113 -2.4698 23 6 1.9798 -2.0944 -1.3237 24 9 1.4737 -2.8298 -0.3096 25 1 -0.3632 0.5138 -0.8901 26 1 -0.3632 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8899 28 1 2.9173 -1.1204 1.0288 29 1 2.7587 1.0462 2.1183 30 1 1.0870 0.6163 2.5526 31 1 2.5048 1.0621 4.8009 32 1 3.1323 1.8436 7.9846 33 1 3.4251 -0.1371 -4.2453 34 1 2.4137 -3.7877 -2.5507 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000353231128.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:47:27 Heat of formation + Delta-G solvation = -107.918779 kcal Electronic energy + Delta-G solvation = -21999.355673 eV Core-core repulsion = 18181.517660 eV Total energy + Delta-G solvation = -3817.838013 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 285.103 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -50.20757 -49.98714 -41.16569 -40.20061 -37.93909 -35.97273 -33.74707 -33.21926 -31.74985 -30.88676 -28.24405 -26.33411 -25.20081 -24.55751 -22.05018 -21.18532 -19.97314 -19.20634 -19.13332 -18.37193 -17.39235 -17.32384 -16.92906 -16.76915 -16.46666 -16.38115 -16.03747 -15.58708 -15.40926 -15.07168 -14.70055 -14.63655 -14.21532 -14.18308 -13.53605 -13.43744 -13.37883 -13.14972 -12.90619 -12.81693 -12.41984 -12.28852 -12.12187 -11.53255 -10.97427 -10.73621 -10.37553 -10.03614 -10.01122 -9.51563 -8.48507 -5.97350 -0.38260 -0.33026 1.35674 1.41310 1.55528 2.01882 2.25314 2.30348 2.61649 2.72031 2.97114 3.10761 3.18834 3.32184 3.35106 3.62814 3.92343 4.09271 4.16475 4.27079 4.40466 4.46267 4.48741 4.54087 4.69352 4.78042 4.86185 5.22759 5.39689 5.41344 5.76283 6.01999 6.15811 6.51401 6.57610 7.10668 7.53257 8.08599 8.69103 Molecular weight = 285.10amu Principal moments of inertia in cm(-1) A = 0.029827 B = 0.003510 C = 0.003357 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 938.514557 B = 7975.303205 C = 8339.348841 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.124 3.876 3 H 0.073 0.927 4 N -0.666 5.666 5 C 0.065 3.935 6 C 0.438 3.562 7 O -0.622 6.622 8 N -0.571 5.571 9 C -0.334 4.334 10 H 0.078 0.922 11 C -0.012 4.012 12 N -0.920 5.920 13 Si 0.993 3.007 14 H -0.274 1.274 15 H -0.270 1.270 16 H -0.270 1.270 17 C -0.130 4.130 18 C 0.082 3.918 19 F -0.120 7.120 20 C 0.071 3.929 21 N -0.439 5.439 22 C 0.066 3.934 23 C 0.088 3.912 24 F -0.115 7.115 25 H 0.077 0.923 26 H 0.055 0.945 27 H 0.068 0.932 28 H 0.341 0.659 29 H 0.069 0.931 30 H 0.109 0.891 31 H 0.397 0.603 32 H 0.278 0.722 33 H 0.206 0.794 34 H 0.198 0.802 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.015 0.819 -20.504 20.740 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.015 3.985 3 H 0.091 0.909 4 N -0.299 5.299 5 C -0.067 4.067 6 C 0.225 3.775 7 O -0.508 6.508 8 N -0.209 5.209 9 C -0.464 4.464 10 H 0.096 0.904 11 C -0.212 4.212 12 N -0.560 5.560 13 Si 0.817 3.183 14 H -0.198 1.198 15 H -0.195 1.195 16 H -0.195 1.195 17 C -0.139 4.139 18 C 0.060 3.940 19 F -0.098 7.098 20 C -0.088 4.088 21 N -0.146 5.146 22 C -0.092 4.092 23 C 0.066 3.934 24 F -0.093 7.093 25 H 0.095 0.905 26 H 0.074 0.926 27 H 0.087 0.913 28 H 0.160 0.840 29 H 0.086 0.914 30 H 0.127 0.873 31 H 0.231 0.769 32 H 0.087 0.913 33 H 0.223 0.777 34 H 0.215 0.785 Dipole moment (debyes) X Y Z Total from point charges -3.157 -0.478 -20.924 21.167 hybrid contribution 0.537 1.180 1.821 2.235 sum -2.620 0.702 -19.104 19.295 Atomic orbital electron populations 1.21787 0.91755 1.02710 1.02882 1.20468 0.97637 0.95718 0.84672 0.90883 1.60253 1.34495 1.32172 1.02983 1.21610 1.02712 0.93545 0.88864 1.20761 0.83370 0.87956 0.85373 1.90505 1.56599 1.18160 1.85544 1.41911 1.58193 1.12591 1.08163 1.19702 1.42153 0.95954 0.88565 0.90376 1.26036 0.97162 0.96618 1.01341 1.69675 1.48555 1.09667 1.28145 0.84871 0.78206 0.78024 0.77234 1.19848 1.19510 1.19548 1.20725 1.01799 0.93559 0.97847 1.18501 1.01488 0.78264 0.95769 1.91549 1.93969 1.27865 1.96446 1.23446 0.97866 0.90215 0.97227 1.67877 1.12561 1.07048 1.27159 1.23393 0.95687 1.02840 0.87271 1.18652 0.98726 0.88521 0.87539 1.91643 1.84010 1.75899 1.57780 0.90460 0.92612 0.91265 0.83987 0.91367 0.87286 0.76918 0.91251 0.77707 0.78538 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.96 9.36 71.98 0.67 -2.28 16 2 C 0.12 3.05 2.66 44.17 0.12 3.17 16 3 H 0.07 1.67 7.03 -2.39 -0.02 1.65 16 4 N -0.67 -21.60 4.74 -499.46 -2.37 -23.97 16 5 C 0.06 2.24 5.97 85.55 0.51 2.75 16 6 C 0.44 21.06 7.82 87.66 0.69 21.75 16 7 O -0.62 -35.03 15.78 -3.08 -0.05 -35.08 16 8 N -0.57 -29.49 5.29 -306.99 -1.62 -31.11 16 9 C -0.33 -19.13 9.68 84.04 0.81 -18.32 16 10 H 0.08 4.79 7.16 -2.91 -0.02 4.77 16 11 C -0.01 -0.63 5.50 84.93 0.47 -0.16 16 12 N -0.92 -49.62 13.05 21.66 0.28 -49.34 16 13 Si 0.99 43.08 29.55 68.60 2.03 45.11 16 14 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16 15 H -0.27 -11.17 7.11 99.48 0.71 -10.46 16 16 H -0.27 -11.21 7.11 99.48 0.71 -10.51 16 17 C -0.13 -2.91 4.69 -19.59 -0.09 -3.00 16 18 C 0.08 1.54 7.29 22.46 0.16 1.70 16 19 F -0.12 -2.26 16.40 44.97 0.74 -1.53 16 20 C 0.07 1.11 11.17 84.74 0.95 2.06 16 21 N -0.44 -8.01 10.36 -195.48 -2.02 -10.03 16 22 C 0.07 1.23 11.17 84.74 0.95 2.17 16 23 C 0.09 2.02 6.89 22.46 0.15 2.18 16 24 F -0.12 -3.31 15.57 44.97 0.70 -2.61 16 25 H 0.08 1.37 8.14 -2.39 -0.02 1.35 16 26 H 0.05 1.38 7.81 -2.39 -0.02 1.36 16 27 H 0.07 1.52 7.45 -2.39 -0.02 1.50 16 28 H 0.34 12.00 7.80 -89.69 -0.70 11.30 16 29 H 0.07 2.06 8.06 -2.39 -0.02 2.04 16 30 H 0.11 3.35 7.44 -2.39 -0.02 3.34 16 31 H 0.40 19.35 7.90 -92.71 -0.73 18.62 16 32 H 0.28 13.98 8.31 -92.70 -0.77 13.21 16 33 H 0.21 1.80 8.06 -2.91 -0.02 1.77 16 34 H 0.20 2.64 8.06 -2.91 -0.02 2.61 16 Total: -1.00 -68.14 307.46 2.81 -65.32 By element: Atomic # 1 Polarization: 31.47 SS G_CDS: -0.26 Total: 31.22 kcal Atomic # 6 Polarization: 6.62 SS G_CDS: 5.39 Total: 12.01 kcal Atomic # 7 Polarization: -108.72 SS G_CDS: -5.73 Total: -114.45 kcal Atomic # 8 Polarization: -35.03 SS G_CDS: -0.05 Total: -35.08 kcal Atomic # 9 Polarization: -5.57 SS G_CDS: 1.44 Total: -4.13 kcal Atomic # 14 Polarization: 43.08 SS G_CDS: 2.03 Total: 45.11 kcal Total: -68.14 2.81 -65.32 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000353231128.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.594 kcal (2) G-P(sol) polarization free energy of solvation -68.139 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.733 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.814 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.325 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.919 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds