Wall clock time and date at job start Wed Apr 15 2020 11:47:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 N 1.31109 * 119.12465 * 2 1 4 4 C 1.33645 * 121.32389 * 179.97438 * 3 2 1 5 5 C 1.40606 * 121.08809 * 179.97438 * 4 3 2 6 6 C 1.36066 * 119.75211 * 180.02562 * 5 4 3 7 7 C 1.39365 * 121.07131 * 0.02562 * 6 5 4 8 8 C 1.36134 * 120.87382 * 359.97438 * 7 6 5 9 9 C 1.40436 * 119.60883 * 0.02562 * 8 7 6 10 10 C 1.40740 * 121.37509 * 179.97438 * 9 8 7 11 11 C 1.50697 * 120.92629 * 0.04489 * 10 9 8 12 12 C 1.36613 * 118.14825 * 180.02562 * 10 9 8 13 13 C 1.50699 * 120.03089 * 179.97438 * 12 10 9 14 14 C 1.50699 * 109.47117 * 270.02389 * 13 12 10 15 15 O 1.21213 * 120.00175 * 0.02562 * 14 13 12 16 16 O 1.34310 * 119.99640 * 180.02562 * 14 13 12 17 17 C 1.34926 * 116.99812 * 180.02562 * 16 14 13 18 18 H 1.08001 * 119.99871 * 359.97438 * 17 16 14 19 19 C 1.38750 * 120.00075 * 179.97438 * 17 16 14 20 20 N 1.31444 * 120.00036 * 0.02562 * 19 17 16 21 21 Si 1.86802 * 120.00023 * 179.97438 * 19 17 16 22 22 H 1.48504 * 109.46679 * 60.00413 * 21 19 17 23 23 H 1.48504 * 109.47015 * 180.02562 * 21 19 17 24 24 H 1.48493 * 109.47253 * 300.00323 * 21 19 17 25 25 H 1.09003 * 109.47434 * 90.00414 * 1 2 3 26 26 H 1.09003 * 109.47232 * 209.99729 * 1 2 3 27 27 H 1.09001 * 109.47450 * 330.00384 * 1 2 3 28 28 H 1.08002 * 120.12306 * 359.97438 * 5 4 3 29 29 H 1.07998 * 119.46835 * 179.97438 * 6 5 4 30 30 H 1.08001 * 119.56699 * 179.70421 * 7 6 5 31 31 H 1.07996 * 120.19725 * 179.97438 * 8 7 6 32 32 H 1.09004 * 109.47133 * 270.00084 * 11 10 9 33 33 H 1.08999 * 109.46918 * 29.99909 * 11 10 9 34 34 H 1.09005 * 109.47160 * 149.99690 * 11 10 9 35 35 H 1.09000 * 109.46860 * 30.02422 * 13 12 10 36 36 H 1.09005 * 109.46797 * 150.02782 * 13 12 10 37 37 H 0.96994 * 119.99832 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.1451 1.1453 0.0000 4 6 3.4805 1.1966 0.0005 5 6 4.1598 2.4277 0.0000 6 6 5.5203 2.4482 0.0000 7 6 6.2575 1.2655 0.0000 8 6 5.6354 0.0546 0.0005 9 6 4.2323 -0.0046 0.0005 10 6 3.5509 -1.2361 0.0005 11 6 4.3070 -2.5396 0.0015 12 6 2.1849 -1.2168 -0.0001 13 6 1.4123 -2.5107 -0.0007 14 6 1.1559 -2.9419 -1.4217 15 8 1.5608 -2.2659 -2.3427 16 8 0.4787 -4.0755 -1.6676 17 6 0.2840 -4.4042 -2.9616 18 1 0.6663 -3.7658 -3.7443 19 6 -0.4073 -5.5625 -3.2867 20 7 -0.8729 -6.3392 -2.3341 21 14 -0.6774 -6.0173 -5.0783 22 1 0.6365 -6.1830 -5.7503 23 1 -1.4381 -7.2903 -5.1566 24 1 -1.4456 -4.9399 -5.7521 25 1 -0.3634 -0.0001 -1.0277 26 1 -0.3634 -0.8900 0.5138 27 1 -0.3634 0.8900 0.5138 28 1 3.6038 3.3536 -0.0013 29 1 6.0374 3.3964 -0.0009 30 1 7.3366 1.3101 -0.0048 31 1 6.2174 -0.8551 0.0001 32 1 4.4900 -2.8543 -1.0260 33 1 5.2588 -2.4071 0.5159 34 1 3.7191 -3.3003 0.5153 35 1 1.9898 -3.2789 0.5136 36 1 0.4615 -2.3663 0.5124 37 1 -1.3565 -7.1487 -2.5614 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000011196373.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:47:25 Heat of formation + Delta-G solvation = -33.336920 kcal Electronic energy + Delta-G solvation = -21816.326827 eV Core-core repulsion = 18523.659705 eV Total energy + Delta-G solvation = -3292.667122 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 285.115 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.00569 -39.01779 -37.42750 -35.38572 -34.64571 -32.57417 -32.13693 -30.89424 -28.61544 -27.80406 -27.09029 -25.17801 -22.76324 -22.46910 -20.63430 -20.08820 -17.93748 -17.74093 -17.08829 -16.61822 -15.85596 -15.05145 -14.86312 -14.47114 -14.31949 -14.26476 -14.02932 -13.56350 -13.30520 -13.13401 -12.75070 -12.71954 -12.33917 -12.15315 -12.12144 -11.62836 -11.55687 -11.39461 -11.20729 -11.07189 -10.96737 -10.47771 -10.34817 -9.97146 -9.82750 -9.30099 -9.06327 -8.58707 -8.42165 -8.05472 -6.42280 -4.10301 0.50084 0.93222 2.09752 2.95010 3.11885 3.18250 3.22131 3.51045 3.93468 4.17923 4.32080 4.56890 4.65198 4.74230 4.84219 4.86907 5.05186 5.12354 5.15537 5.28570 5.40851 5.42591 5.57373 5.63045 5.66855 5.78746 5.94022 5.97196 5.99953 6.09664 6.18210 6.22273 6.30949 6.40959 6.57010 6.67360 6.77157 6.98345 7.38330 7.94186 8.11794 8.70459 9.06751 9.83998 10.75567 Molecular weight = 285.12amu Principal moments of inertia in cm(-1) A = 0.026837 B = 0.004058 C = 0.003884 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1043.085116 B = 6898.861141 C = 7207.135927 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C 0.188 3.812 3 N -0.487 5.487 4 C 0.134 3.866 5 C -0.096 4.096 6 C -0.106 4.106 7 C -0.130 4.130 8 C -0.090 4.090 9 C -0.104 4.104 10 C -0.010 4.010 11 C -0.124 4.124 12 C -0.111 4.111 13 C -0.072 4.072 14 C 0.401 3.599 15 O -0.548 6.548 16 O -0.214 6.214 17 C -0.382 4.382 18 H 0.094 0.906 19 C 0.043 3.957 20 N -0.866 5.866 21 Si 0.942 3.058 22 H -0.270 1.270 23 H -0.279 1.279 24 H -0.270 1.270 25 H 0.086 0.914 26 H 0.081 0.919 27 H 0.077 0.923 28 H 0.132 0.868 29 H 0.125 0.875 30 H 0.123 0.877 31 H 0.129 0.871 32 H 0.085 0.915 33 H 0.071 0.929 34 H 0.080 0.920 35 H 0.105 0.895 36 H 0.107 0.893 37 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.929 11.016 7.922 16.813 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.035 3.965 3 N -0.197 5.197 4 C 0.012 3.988 5 C -0.115 4.115 6 C -0.126 4.126 7 C -0.148 4.148 8 C -0.109 4.109 9 C -0.106 4.106 10 C -0.017 4.017 11 C -0.180 4.180 12 C -0.113 4.113 13 C -0.110 4.110 14 C 0.247 3.753 15 O -0.445 6.445 16 O -0.122 6.122 17 C -0.458 4.458 18 H 0.112 0.888 19 C -0.161 4.161 20 N -0.503 5.503 21 Si 0.767 3.233 22 H -0.195 1.195 23 H -0.204 1.204 24 H -0.195 1.195 25 H 0.105 0.895 26 H 0.100 0.900 27 H 0.096 0.904 28 H 0.149 0.851 29 H 0.143 0.857 30 H 0.141 0.859 31 H 0.147 0.853 32 H 0.103 0.897 33 H 0.090 0.910 34 H 0.098 0.902 35 H 0.123 0.877 36 H 0.125 0.875 37 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 9.514 11.820 7.700 17.015 hybrid contribution 0.342 -1.014 -0.976 1.448 sum 9.856 10.806 6.724 16.098 Atomic orbital electron populations 1.20906 0.88693 1.03437 1.04030 1.21257 0.97016 0.87420 0.90757 1.67867 1.08190 1.28324 1.15286 1.18832 0.89317 0.92760 0.97884 1.20739 0.94019 0.96346 1.00394 1.20825 0.93782 0.98415 0.99564 1.20827 0.99995 0.92377 1.01581 1.21008 0.92798 0.98449 0.98624 1.18658 0.94640 0.93334 1.04018 1.19945 0.93194 0.94810 0.93789 1.20955 0.99783 0.93530 1.03737 1.19782 0.93549 0.95364 1.02605 1.20156 1.01870 0.94412 0.94522 1.22858 0.80036 0.81866 0.90550 1.90586 1.52091 1.55283 1.46525 1.83873 1.61527 1.35904 1.30873 1.21154 1.36664 1.07921 0.80094 0.88823 1.25304 0.95751 0.94943 1.00078 1.69977 1.34645 1.13211 1.32461 0.85770 0.78880 0.78056 0.80636 1.19526 1.20351 1.19488 0.89518 0.90015 0.90388 0.85053 0.85686 0.85875 0.85319 0.89662 0.91003 0.90183 0.87700 0.87486 0.92035 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.68 9.73 36.00 0.35 -1.33 16 2 C 0.19 3.26 6.78 -82.51 -0.56 2.70 16 3 N -0.49 -8.57 10.24 -7.23 -0.07 -8.65 16 4 C 0.13 2.20 6.60 -84.86 -0.56 1.64 16 5 C -0.10 -1.28 9.98 -39.47 -0.39 -1.68 16 6 C -0.11 -1.15 9.94 -39.94 -0.40 -1.55 16 7 C -0.13 -1.40 9.95 -39.92 -0.40 -1.80 16 8 C -0.09 -1.13 9.31 -39.51 -0.37 -1.50 16 9 C -0.10 -1.64 5.74 -106.80 -0.61 -2.25 16 10 C -0.01 -0.16 5.92 -104.27 -0.62 -0.78 16 11 C -0.12 -1.68 9.19 36.00 0.33 -1.35 16 12 C -0.11 -1.94 4.35 -104.82 -0.46 -2.39 16 13 C -0.07 -1.27 5.13 -29.04 -0.15 -1.42 16 14 C 0.40 9.60 7.90 36.01 0.28 9.88 16 15 O -0.55 -14.60 15.27 -19.05 -0.29 -14.89 16 16 O -0.21 -5.99 9.75 -20.72 -0.20 -6.19 16 17 C -0.38 -11.17 9.65 30.92 0.30 -10.87 16 18 H 0.09 2.78 6.86 -52.49 -0.36 2.42 16 19 C 0.04 1.20 5.49 -17.53 -0.10 1.11 16 20 N -0.87 -25.00 13.67 55.48 0.76 -24.25 16 21 Si 0.94 21.21 29.55 -169.99 -5.02 16.18 16 22 H -0.27 -5.96 7.11 56.52 0.40 -5.56 16 23 H -0.28 -6.00 7.11 56.52 0.40 -5.60 16 24 H -0.27 -5.97 7.11 56.52 0.40 -5.56 16 25 H 0.09 1.38 8.14 -51.93 -0.42 0.96 16 26 H 0.08 1.08 5.88 -51.93 -0.31 0.78 16 27 H 0.08 1.00 8.14 -51.93 -0.42 0.57 16 28 H 0.13 1.54 8.06 -52.49 -0.42 1.12 16 29 H 0.13 0.97 8.06 -52.49 -0.42 0.55 16 30 H 0.12 0.96 8.06 -52.49 -0.42 0.54 16 31 H 0.13 1.32 6.45 -52.49 -0.34 0.99 16 32 H 0.08 1.26 8.14 -51.93 -0.42 0.84 16 33 H 0.07 0.76 6.52 -51.93 -0.34 0.42 16 34 H 0.08 1.02 6.01 -51.93 -0.31 0.71 16 35 H 0.10 1.63 6.00 -51.93 -0.31 1.31 16 36 H 0.11 1.66 5.90 -51.93 -0.31 1.35 16 37 H 0.27 7.17 8.31 -40.82 -0.34 6.83 16 LS Contribution 316.00 15.07 4.76 4.76 Total: -1.00 -34.60 316.00 -7.36 -41.96 By element: Atomic # 1 Polarization: 6.60 SS G_CDS: -3.94 Total: 2.66 kcal Atomic # 6 Polarization: -8.25 SS G_CDS: -3.34 Total: -11.60 kcal Atomic # 7 Polarization: -33.58 SS G_CDS: 0.68 Total: -32.89 kcal Atomic # 8 Polarization: -20.58 SS G_CDS: -0.49 Total: -21.08 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -5.02 Total: 16.18 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -34.60 -7.36 -41.96 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000011196373.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.624 kcal (2) G-P(sol) polarization free energy of solvation -34.603 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.979 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.358 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.961 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.337 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds