Wall clock time and date at job start Wed Apr 15 2020 11:47:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 N 1.31109 * 119.12465 * 2 1 4 4 C 1.33645 * 121.32389 * 179.97438 * 3 2 1 5 5 C 1.40606 * 121.08809 * 179.97438 * 4 3 2 6 6 C 1.36066 * 119.75211 * 180.02562 * 5 4 3 7 7 C 1.39365 * 121.07131 * 0.02562 * 6 5 4 8 8 C 1.36134 * 120.87382 * 359.97438 * 7 6 5 9 9 C 1.40436 * 119.60883 * 0.02562 * 8 7 6 10 10 C 1.40740 * 121.37509 * 179.97438 * 9 8 7 11 11 C 1.50697 * 120.92629 * 0.04489 * 10 9 8 12 12 C 1.36613 * 118.14825 * 180.02562 * 10 9 8 13 13 C 1.50699 * 120.03089 * 179.97438 * 12 10 9 14 14 C 1.50699 * 109.47117 * 270.02389 * 13 12 10 15 15 O 1.21213 * 120.00175 * 0.02562 * 14 13 12 16 16 O 1.34310 * 119.99640 * 180.02562 * 14 13 12 17 17 C 1.34926 * 116.99812 * 180.02562 * 16 14 13 18 18 H 1.08001 * 119.99871 * 359.97438 * 17 16 14 19 19 C 1.38750 * 120.00075 * 179.97438 * 17 16 14 20 20 N 1.31444 * 120.00036 * 0.02562 * 19 17 16 21 21 Si 1.86802 * 120.00023 * 179.97438 * 19 17 16 22 22 H 1.48504 * 109.46679 * 60.00413 * 21 19 17 23 23 H 1.48504 * 109.47015 * 180.02562 * 21 19 17 24 24 H 1.48493 * 109.47253 * 300.00323 * 21 19 17 25 25 H 1.09003 * 109.47434 * 90.00414 * 1 2 3 26 26 H 1.09003 * 109.47232 * 209.99729 * 1 2 3 27 27 H 1.09001 * 109.47450 * 330.00384 * 1 2 3 28 28 H 1.08002 * 120.12306 * 359.97438 * 5 4 3 29 29 H 1.07998 * 119.46835 * 179.97438 * 6 5 4 30 30 H 1.08001 * 119.56699 * 179.70421 * 7 6 5 31 31 H 1.07996 * 120.19725 * 179.97438 * 8 7 6 32 32 H 1.09004 * 109.47133 * 270.00084 * 11 10 9 33 33 H 1.08999 * 109.46918 * 29.99909 * 11 10 9 34 34 H 1.09005 * 109.47160 * 149.99690 * 11 10 9 35 35 H 1.09000 * 109.46860 * 30.02422 * 13 12 10 36 36 H 1.09005 * 109.46797 * 150.02782 * 13 12 10 37 37 H 0.96994 * 119.99832 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.1451 1.1453 0.0000 4 6 3.4805 1.1966 0.0005 5 6 4.1598 2.4277 0.0000 6 6 5.5203 2.4482 0.0000 7 6 6.2575 1.2655 0.0000 8 6 5.6354 0.0546 0.0005 9 6 4.2323 -0.0046 0.0005 10 6 3.5509 -1.2361 0.0005 11 6 4.3070 -2.5396 0.0015 12 6 2.1849 -1.2168 -0.0001 13 6 1.4123 -2.5107 -0.0007 14 6 1.1559 -2.9419 -1.4217 15 8 1.5608 -2.2659 -2.3427 16 8 0.4787 -4.0755 -1.6676 17 6 0.2840 -4.4042 -2.9616 18 1 0.6663 -3.7658 -3.7443 19 6 -0.4073 -5.5625 -3.2867 20 7 -0.8729 -6.3392 -2.3341 21 14 -0.6774 -6.0173 -5.0783 22 1 0.6365 -6.1830 -5.7503 23 1 -1.4381 -7.2903 -5.1566 24 1 -1.4456 -4.9399 -5.7521 25 1 -0.3634 -0.0001 -1.0277 26 1 -0.3634 -0.8900 0.5138 27 1 -0.3634 0.8900 0.5138 28 1 3.6038 3.3536 -0.0013 29 1 6.0374 3.3964 -0.0009 30 1 7.3366 1.3101 -0.0048 31 1 6.2174 -0.8551 0.0001 32 1 4.4900 -2.8543 -1.0260 33 1 5.2588 -2.4071 0.5159 34 1 3.7191 -3.3003 0.5153 35 1 1.9898 -3.2789 0.5136 36 1 0.4615 -2.3663 0.5124 37 1 -1.3565 -7.1487 -2.5614 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000011196373.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:47:24 Heat of formation + Delta-G solvation = -53.984188 kcal Electronic energy + Delta-G solvation = -21817.222160 eV Core-core repulsion = 18523.659705 eV Total energy + Delta-G solvation = -3293.562455 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 285.115 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -42.18827 -40.90439 -38.59194 -37.22146 -35.99202 -34.30355 -33.74886 -31.98844 -29.87532 -28.91188 -28.40129 -27.13783 -24.04491 -23.52799 -21.87989 -21.71962 -19.86419 -19.06312 -18.56551 -18.16804 -16.98992 -16.65767 -16.62281 -16.21912 -15.70900 -15.59078 -15.13194 -14.69169 -14.51714 -14.38429 -14.21374 -13.97130 -13.73485 -13.58529 -13.39331 -13.22369 -13.04573 -12.58658 -12.41368 -12.31235 -12.21794 -12.18171 -12.10896 -11.96517 -11.18484 -10.96647 -10.69111 -10.50237 -9.57347 -9.12285 -8.53039 -6.32673 -0.58466 -0.19808 0.98833 1.31756 1.33933 1.48868 1.65371 1.85809 2.15547 2.82687 2.97802 3.14558 3.20813 3.44087 3.58295 3.70655 3.80788 3.99030 4.17502 4.28766 4.33894 4.38996 4.42702 4.49271 4.53574 4.63159 4.72891 4.76429 4.87682 4.99061 5.04108 5.11798 5.15295 5.19228 5.21134 5.44815 5.51486 5.63972 5.84082 5.95301 6.68513 6.91356 6.92432 7.78025 8.67032 Molecular weight = 285.12amu Principal moments of inertia in cm(-1) A = 0.026837 B = 0.004058 C = 0.003884 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1043.085116 B = 6898.861141 C = 7207.135927 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C 0.165 3.835 3 N -0.506 5.506 4 C 0.104 3.896 5 C -0.119 4.119 6 C -0.089 4.089 7 C -0.119 4.119 8 C -0.101 4.101 9 C -0.126 4.126 10 C -0.015 4.015 11 C -0.123 4.123 12 C -0.140 4.140 13 C -0.058 4.058 14 C 0.405 3.595 15 O -0.578 6.578 16 O -0.242 6.242 17 C -0.420 4.420 18 H 0.077 0.923 19 C 0.000 4.000 20 N -0.900 5.900 21 Si 1.012 2.988 22 H -0.263 1.263 23 H -0.258 1.258 24 H -0.264 1.264 25 H 0.067 0.933 26 H 0.093 0.907 27 H 0.094 0.906 28 H 0.139 0.861 29 H 0.164 0.836 30 H 0.163 0.837 31 H 0.152 0.848 32 H 0.069 0.931 33 H 0.105 0.895 34 H 0.084 0.916 35 H 0.129 0.871 36 H 0.129 0.871 37 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.051 11.585 8.151 18.598 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.013 3.987 3 N -0.216 5.216 4 C -0.017 4.017 5 C -0.138 4.138 6 C -0.108 4.108 7 C -0.136 4.136 8 C -0.119 4.119 9 C -0.128 4.128 10 C -0.023 4.023 11 C -0.179 4.179 12 C -0.142 4.142 13 C -0.096 4.096 14 C 0.253 3.747 15 O -0.476 6.476 16 O -0.150 6.150 17 C -0.496 4.496 18 H 0.095 0.905 19 C -0.201 4.201 20 N -0.538 5.538 21 Si 0.831 3.169 22 H -0.188 1.188 23 H -0.182 1.182 24 H -0.189 1.189 25 H 0.086 0.914 26 H 0.112 0.888 27 H 0.113 0.887 28 H 0.157 0.843 29 H 0.182 0.818 30 H 0.181 0.819 31 H 0.169 0.831 32 H 0.088 0.912 33 H 0.123 0.877 34 H 0.103 0.897 35 H 0.147 0.853 36 H 0.147 0.853 37 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 11.643 12.400 7.954 18.777 hybrid contribution -0.119 -1.004 -0.980 1.408 sum 11.523 11.396 6.974 17.644 Atomic orbital electron populations 1.20908 0.87794 1.04901 1.03133 1.21547 0.97935 0.87662 0.91520 1.67868 1.09279 1.28473 1.16018 1.19376 0.89258 0.94444 0.98611 1.20989 0.95370 0.95610 1.01784 1.21330 0.92811 1.00363 0.96291 1.21349 1.02033 0.91421 0.98835 1.21333 0.91470 1.00454 0.98657 1.18958 0.96314 0.92790 1.04745 1.20347 0.93140 0.96265 0.92519 1.21013 1.01289 0.92385 1.03179 1.19811 0.94309 0.94921 1.05150 1.20196 1.03609 0.95398 0.90362 1.24051 0.77695 0.80101 0.92841 1.90552 1.52842 1.55781 1.48413 1.83895 1.62997 1.37774 1.30382 1.21297 1.38683 1.09041 0.80531 0.90485 1.26422 0.94493 0.94038 1.05110 1.70052 1.35018 1.13783 1.34897 0.84769 0.79250 0.78474 0.74412 1.18761 1.18219 1.18902 0.91448 0.88817 0.88706 0.84268 0.81822 0.81896 0.83089 0.91234 0.87663 0.89702 0.85335 0.85350 0.91183 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -3.40 9.73 71.23 0.69 -2.70 16 2 C 0.17 5.93 6.78 42.92 0.29 6.22 16 3 N -0.51 -18.30 10.24 -176.78 -1.81 -20.11 16 4 C 0.10 3.42 6.60 40.30 0.27 3.69 16 5 C -0.12 -3.01 9.98 22.34 0.22 -2.78 16 6 C -0.09 -1.61 9.94 22.04 0.22 -1.39 16 7 C -0.12 -2.06 9.95 22.05 0.22 -1.85 16 8 C -0.10 -2.26 9.31 22.32 0.21 -2.05 16 9 C -0.13 -3.87 5.74 -21.27 -0.12 -3.99 16 10 C -0.02 -0.49 5.92 -19.63 -0.12 -0.60 16 11 C -0.12 -3.21 9.19 71.24 0.65 -2.56 16 12 C -0.14 -4.98 4.35 -19.99 -0.09 -5.07 16 13 C -0.06 -2.09 5.13 29.10 0.15 -1.94 16 14 C 0.41 20.10 7.90 71.24 0.56 20.67 16 15 O -0.58 -32.16 15.27 20.76 0.32 -31.84 16 16 O -0.24 -14.02 9.75 14.82 0.14 -13.87 16 17 C -0.42 -25.40 9.65 67.94 0.66 -24.75 16 18 H 0.08 4.78 6.86 -2.91 -0.02 4.76 16 19 C 0.00 0.00 5.49 84.87 0.47 0.46 16 20 N -0.90 -52.56 13.67 21.62 0.30 -52.26 16 21 Si 1.01 43.46 29.55 68.60 2.03 45.49 16 22 H -0.26 -10.92 7.11 99.48 0.71 -10.21 16 23 H -0.26 -10.17 7.11 99.48 0.71 -9.47 16 24 H -0.26 -11.04 7.11 99.48 0.71 -10.34 16 25 H 0.07 2.30 8.14 -2.39 -0.02 2.28 16 26 H 0.09 2.54 5.88 -2.39 -0.01 2.53 16 27 H 0.09 2.49 8.14 -2.39 -0.02 2.47 16 28 H 0.14 3.15 8.06 -2.91 -0.02 3.12 16 29 H 0.16 1.70 8.06 -2.91 -0.02 1.67 16 30 H 0.16 1.58 8.06 -2.91 -0.02 1.55 16 31 H 0.15 2.59 6.45 -2.91 -0.02 2.57 16 32 H 0.07 2.05 8.14 -2.39 -0.02 2.03 16 33 H 0.10 1.97 6.52 -2.39 -0.02 1.95 16 34 H 0.08 2.10 6.01 -2.38 -0.01 2.08 16 35 H 0.13 3.95 6.00 -2.39 -0.01 3.94 16 36 H 0.13 4.00 5.90 -2.38 -0.01 3.99 16 37 H 0.28 14.79 8.31 -92.71 -0.77 14.02 16 Total: -1.00 -78.66 316.00 6.37 -72.29 By element: Atomic # 1 Polarization: 17.85 SS G_CDS: 1.11 Total: 18.96 kcal Atomic # 6 Polarization: -22.93 SS G_CDS: 4.28 Total: -18.65 kcal Atomic # 7 Polarization: -70.86 SS G_CDS: -1.51 Total: -72.38 kcal Atomic # 8 Polarization: -46.17 SS G_CDS: 0.46 Total: -45.71 kcal Atomic # 14 Polarization: 43.46 SS G_CDS: 2.03 Total: 45.49 kcal Total: -78.66 6.37 -72.29 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000011196373.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.306 kcal (2) G-P(sol) polarization free energy of solvation -78.657 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.352 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.368 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.290 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.984 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds