Wall clock time and date at job start Wed Apr 15 2020 11:47:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42901 * 114.00167 * 2 1 4 4 C 1.53003 * 109.47294 * 179.97438 * 3 2 1 5 5 N 1.46498 * 109.46598 * 64.67751 * 4 3 2 6 6 C 1.36941 * 119.99571 * 264.89308 * 5 4 3 7 7 H 1.07998 * 120.00242 * 321.76538 * 6 5 4 8 8 C 1.38807 * 119.99864 * 141.77186 * 6 5 4 9 9 N 1.31625 * 120.00035 * 160.93648 * 8 6 5 10 10 Si 1.86804 * 120.00257 * 340.93161 * 8 6 5 11 11 H 1.48504 * 109.46877 * 95.23655 * 10 8 6 12 12 H 1.48497 * 109.47300 * 215.23470 * 10 8 6 13 13 H 1.48499 * 109.47139 * 335.24090 * 10 8 6 14 14 C 1.46497 * 120.00559 * 84.89443 * 5 4 3 15 15 C 1.50701 * 109.47366 * 89.99450 * 14 5 4 16 16 O 1.34041 * 126.77938 * 269.69277 * 15 14 5 17 17 N 1.20922 * 111.56453 * 179.78783 * 16 15 14 18 18 C 1.30169 * 111.60548 * 0.48960 * 17 16 15 19 19 C 1.50700 * 126.80038 * 179.72310 * 18 17 16 20 20 C 1.35452 * 126.77073 * 90.00268 * 15 14 5 21 21 N 1.48014 * 128.01324 * 0.02562 * 20 15 14 22 22 O 1.21808 * 120.00012 * 89.99847 * 21 20 15 23 23 O 1.21802 * 120.00193 * 270.00672 * 21 20 15 24 24 H 1.08999 * 109.47154 * 59.99436 * 1 2 3 25 25 H 1.08998 * 109.46972 * 179.97438 * 1 2 3 26 26 H 1.09006 * 109.46695 * 299.99402 * 1 2 3 27 27 H 1.09007 * 109.46869 * 60.00658 * 3 2 1 28 28 H 1.08992 * 109.47626 * 300.00692 * 3 2 1 29 29 H 1.09001 * 109.47064 * 184.67112 * 4 3 2 30 30 H 1.08993 * 109.47069 * 304.67231 * 4 3 2 31 31 H 0.97002 * 119.99889 * 179.97438 * 9 8 6 32 32 H 1.09002 * 109.47610 * 210.00297 * 14 5 4 33 33 H 1.09002 * 109.46872 * 329.99474 * 14 5 4 34 34 H 1.09000 * 109.47230 * 269.96858 * 19 18 17 35 35 H 1.09003 * 109.47401 * 29.97591 * 19 18 17 36 36 H 1.09009 * 109.46670 * 149.97188 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1846 0.0006 5 7 3.9760 0.5569 -1.2476 6 6 4.1978 -0.7936 -1.2937 7 1 4.6508 -1.2955 -0.4515 8 6 3.8404 -1.5175 -2.4228 9 7 4.3699 -2.7029 -2.6396 10 14 2.6079 -0.8094 -3.6349 11 1 3.3332 -0.1315 -4.7393 12 1 1.7738 -1.9055 -4.1900 13 1 1.7370 0.1717 -2.9391 14 6 4.1794 1.3739 -2.4465 15 6 5.6040 1.8639 -2.4848 16 8 6.0747 3.0045 -1.9613 17 7 7.2636 3.1219 -2.1482 18 6 7.7462 2.1125 -2.8134 19 6 9.1788 1.9118 -3.2361 20 6 6.6604 1.2413 -3.0603 21 7 6.6746 -0.0513 -3.7812 22 8 6.4834 -0.0801 -4.9838 23 8 6.8774 -1.0863 -3.1718 24 1 -0.3633 0.5139 -0.8899 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3633 0.5138 0.8901 27 1 1.6887 1.8463 0.8901 28 1 1.6886 1.8464 -0.8898 29 1 3.9785 2.1770 0.0843 30 1 3.8512 0.5733 0.8460 31 1 4.1199 -3.2089 -3.4285 32 1 3.9775 0.7738 -3.3337 33 1 3.5020 2.2276 -2.4236 34 1 9.3322 2.3529 -4.2210 35 1 9.8409 2.3921 -2.5157 36 1 9.3993 0.8451 -3.2774 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595523456.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:47:09 Heat of formation + Delta-G solvation = 55.482770 kcal Electronic energy + Delta-G solvation = -24165.272757 eV Core-core repulsion = 20465.607882 eV Total energy + Delta-G solvation = -3699.664875 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 285.120 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -45.00283 -41.12611 -37.70408 -36.14550 -35.64493 -34.85967 -32.50918 -31.85547 -29.31981 -28.86443 -27.20244 -25.96524 -25.75034 -23.59684 -22.09843 -21.07834 -20.19864 -18.70658 -18.11879 -17.49939 -17.25524 -16.61487 -16.03964 -15.95210 -15.58505 -15.30622 -14.55502 -14.05793 -13.92071 -13.47522 -13.32052 -12.94910 -12.84761 -12.58520 -12.24722 -11.67236 -11.50487 -11.28306 -11.21873 -10.88888 -10.68393 -10.51699 -10.49324 -10.26779 -10.23485 -10.15677 -9.79251 -9.38227 -9.13329 -8.70412 -7.26599 -6.09386 -3.55473 1.27905 1.32512 1.84501 1.93553 3.17313 3.21994 3.36979 3.41522 4.10069 4.29829 4.31005 4.36474 4.65551 4.91683 5.15708 5.28641 5.35191 5.38700 5.51060 5.53303 5.61597 5.72384 5.78219 5.78645 5.81680 5.88278 5.94924 6.00302 6.06470 6.52709 7.02536 7.65587 7.83898 8.13481 8.20326 8.38653 8.71591 9.49582 9.75962 11.02126 Molecular weight = 285.12amu Principal moments of inertia in cm(-1) A = 0.018222 B = 0.008014 C = 0.006305 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1536.261123 B = 3493.261012 C = 4439.574614 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.356 6.356 3 C 0.043 3.957 4 C 0.145 3.855 5 N -0.568 5.568 6 C -0.273 4.273 7 H 0.089 0.911 8 C 0.057 3.943 9 N -0.852 5.852 10 Si 0.850 3.150 11 H -0.282 1.282 12 H -0.291 1.291 13 H -0.261 1.261 14 C 0.182 3.818 15 C 0.053 3.947 16 O 0.097 5.903 17 N -0.358 5.358 18 C 0.066 3.934 19 C -0.081 4.081 20 C -0.161 4.161 21 N 0.052 4.948 22 O -0.187 6.187 23 O -0.043 6.043 24 H 0.030 0.970 25 H 0.080 0.920 26 H 0.030 0.970 27 H 0.038 0.962 28 H 0.037 0.963 29 H 0.060 0.940 30 H 0.074 0.926 31 H 0.269 0.731 32 H 0.092 0.908 33 H 0.080 0.920 34 H 0.087 0.913 35 H 0.087 0.913 36 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.009 9.837 1.597 9.966 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.273 6.273 3 C -0.036 4.036 4 C 0.020 3.980 5 N -0.286 5.286 6 C -0.401 4.401 7 H 0.107 0.893 8 C -0.149 4.149 9 N -0.488 5.488 10 Si 0.679 3.321 11 H -0.210 1.210 12 H -0.218 1.218 13 H -0.185 1.185 14 C 0.053 3.947 15 C -0.017 4.017 16 O 0.043 5.957 17 N -0.070 5.070 18 C -0.096 4.096 19 C -0.139 4.139 20 C -0.250 4.250 21 N 0.585 4.415 22 O -0.392 6.392 23 O -0.288 6.288 24 H 0.049 0.951 25 H 0.098 0.902 26 H 0.049 0.951 27 H 0.056 0.944 28 H 0.055 0.945 29 H 0.078 0.922 30 H 0.092 0.908 31 H 0.079 0.921 32 H 0.109 0.891 33 H 0.099 0.901 34 H 0.106 0.894 35 H 0.106 0.894 36 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 0.514 11.384 2.309 11.627 hybrid contribution -1.065 -0.493 -1.310 1.759 sum -0.551 10.890 0.999 10.950 Atomic orbital electron populations 1.22666 0.83277 1.02098 0.98642 1.88182 1.17440 1.26823 1.94900 1.23219 0.96956 0.85142 0.98247 1.21183 0.90106 0.97046 0.89697 1.44271 1.73048 1.04750 1.06578 1.18712 1.36954 0.79728 1.04678 0.89324 1.25383 0.96428 0.95308 0.97762 1.69788 1.39326 1.12598 1.27069 0.87332 0.84104 0.79375 0.81252 1.21017 1.21800 1.18495 1.20784 0.83826 0.95490 0.94577 1.26860 1.00919 0.84120 0.89760 1.84908 1.17218 1.34227 1.59323 1.73854 0.92584 1.21795 1.18808 1.23117 0.97978 0.90125 0.98356 1.20290 0.87177 1.03822 1.02562 1.21460 0.96591 0.93183 1.13791 1.42013 0.98818 1.00485 1.00133 1.94504 1.54571 1.93354 0.96791 1.94721 1.45958 1.19357 1.68744 0.95107 0.90179 0.95114 0.94418 0.94478 0.92201 0.90756 0.92065 0.89100 0.90138 0.89429 0.89396 0.89960 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.46 11.01 101.05 1.11 1.57 16 2 O -0.36 -6.93 10.41 -35.23 -0.37 -7.30 16 3 C 0.04 0.72 6.28 37.16 0.23 0.95 16 4 C 0.15 2.59 6.07 -4.04 -0.02 2.56 16 5 N -0.57 -12.39 2.02 -174.61 -0.35 -12.74 16 6 C -0.27 -7.09 9.67 -15.06 -0.15 -7.23 16 7 H 0.09 2.56 8.06 -52.49 -0.42 2.14 16 8 C 0.06 1.55 5.04 -17.43 -0.09 1.46 16 9 N -0.85 -24.58 13.78 55.49 0.76 -23.81 16 10 Si 0.85 21.10 24.84 -169.99 -4.22 16.88 16 11 H -0.28 -7.03 6.71 56.52 0.38 -6.65 16 12 H -0.29 -7.40 7.11 56.52 0.40 -7.00 16 13 H -0.26 -6.13 7.11 56.52 0.40 -5.73 16 14 C 0.18 3.73 5.05 -5.19 -0.03 3.70 16 15 C 0.05 1.06 7.07 -35.30 -0.25 0.81 16 16 O 0.10 1.74 11.20 17.17 0.19 1.93 16 17 N -0.36 -6.35 12.07 33.42 0.40 -5.94 16 18 C 0.07 1.17 7.33 -82.10 -0.60 0.57 16 19 C -0.08 -1.08 10.47 36.01 0.38 -0.71 16 20 C -0.16 -3.35 6.98 -79.75 -0.56 -3.91 16 21 N 0.05 1.19 4.45 34.06 0.15 1.34 16 22 O -0.19 -4.37 19.26 -29.46 -0.57 -4.94 16 23 O -0.04 -1.07 18.75 -29.46 -0.55 -1.62 16 24 H 0.03 0.45 8.14 -51.93 -0.42 0.02 16 25 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16 26 H 0.03 0.38 8.14 -51.93 -0.42 -0.04 16 27 H 0.04 0.51 8.14 -51.93 -0.42 0.09 16 28 H 0.04 0.61 8.14 -51.93 -0.42 0.18 16 29 H 0.06 0.91 8.11 -51.93 -0.42 0.48 16 30 H 0.07 1.37 8.00 -51.93 -0.42 0.95 16 31 H 0.27 7.51 8.31 -40.82 -0.34 7.17 16 32 H 0.09 2.10 3.09 -51.93 -0.16 1.94 16 33 H 0.08 1.37 8.07 -51.93 -0.42 0.95 16 34 H 0.09 1.01 8.14 -51.93 -0.42 0.59 16 35 H 0.09 0.99 8.14 -51.93 -0.42 0.56 16 36 H 0.08 1.11 8.14 -51.92 -0.42 0.68 16 LS Contribution 321.46 15.07 4.84 4.84 Total: -1.00 -30.45 321.46 -4.05 -34.50 By element: Atomic # 1 Polarization: 1.45 SS G_CDS: -4.38 Total: -2.93 kcal Atomic # 6 Polarization: -0.25 SS G_CDS: 0.03 Total: -0.22 kcal Atomic # 7 Polarization: -42.12 SS G_CDS: 0.97 Total: -41.15 kcal Atomic # 8 Polarization: -10.63 SS G_CDS: -1.29 Total: -11.93 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -4.22 Total: 16.88 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -30.45 -4.05 -34.50 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595523456.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.983 kcal (2) G-P(sol) polarization free energy of solvation -30.447 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.536 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.054 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.500 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.483 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds