Wall clock time and date at job start Wed Apr 15 2020 11:47:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47060 * 2 1 4 4 C 1.50697 * 109.47466 * 180.02562 * 3 2 1 5 5 N 1.30302 * 126.33874 * 90.02582 * 4 3 2 6 6 N 1.28526 * 110.07912 * 179.97438 * 5 4 3 7 7 C 1.31289 * 109.85218 * 359.97438 * 6 5 4 8 8 S 1.76200 * 126.48201 * 179.97438 * 7 6 5 9 9 C 1.81004 * 99.99950 * 359.97438 * 8 7 6 10 10 C 1.50703 * 109.47116 * 180.02562 * 9 8 7 11 11 O 1.21290 * 120.00078 * 359.97438 * 10 9 8 12 12 N 1.34781 * 120.00000 * 180.02562 * 10 9 8 13 13 C 1.37098 * 119.99819 * 179.97438 * 12 10 9 14 14 H 1.07996 * 119.99717 * 359.97438 * 13 12 10 15 15 C 1.38954 * 119.99759 * 179.97438 * 13 12 10 16 16 N 1.31405 * 119.99794 * 179.97438 * 15 13 12 17 17 Si 1.86796 * 119.99812 * 359.97438 * 15 13 12 18 18 H 1.48498 * 109.47180 * 90.00268 * 17 15 13 19 19 H 1.48502 * 109.47221 * 210.00013 * 17 15 13 20 20 H 1.48498 * 109.47496 * 329.99922 * 17 15 13 21 21 N 1.36530 * 107.03454 * 359.77532 * 7 6 5 22 22 N 1.36601 * 127.14517 * 180.22792 * 21 7 6 23 23 H 1.09004 * 109.46724 * 180.02562 * 1 2 3 24 24 H 1.09001 * 109.47194 * 299.99650 * 1 2 3 25 25 H 1.08992 * 109.47399 * 59.99823 * 1 2 3 26 26 H 1.09002 * 109.47398 * 120.00169 * 2 1 3 27 27 H 1.09001 * 109.47194 * 240.00350 * 2 1 3 28 28 H 1.09002 * 109.47153 * 300.00319 * 3 2 1 29 29 H 1.08998 * 109.47533 * 59.99948 * 3 2 1 30 30 H 1.09000 * 109.47168 * 299.99818 * 9 8 7 31 31 H 1.08993 * 109.47526 * 59.99605 * 9 8 7 32 32 H 0.96994 * 119.99945 * 359.97438 * 12 10 9 33 33 H 0.97007 * 119.99687 * 179.97438 * 16 15 13 34 34 H 1.00900 * 111.00601 * 270.14695 * 22 21 7 35 35 H 1.00897 * 110.99833 * 34.10185 * 22 21 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5469 1.4426 -0.0006 5 7 4.3186 1.4433 -1.0506 6 7 5.5526 1.4437 -0.6912 7 6 5.6354 1.4438 0.6190 8 16 7.1154 1.4437 1.5752 9 6 8.3467 1.4426 0.2485 10 6 9.7299 1.4417 0.8469 11 8 9.8694 1.4423 2.0517 12 7 10.8119 1.4413 0.0432 13 6 12.0701 1.4411 0.5875 14 1 12.1943 1.4416 1.6603 15 6 13.1856 1.4401 -0.2411 16 7 14.3916 1.4404 0.2807 17 14 12.9706 1.4385 -2.0966 18 1 12.9139 2.8381 -2.5896 19 1 14.1179 0.7376 -2.7273 20 1 11.7091 0.7383 -2.4482 21 7 4.3579 1.4486 1.1005 22 7 3.9701 1.4548 2.4103 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3634 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8899 26 1 1.8934 -0.5139 0.8900 27 1 1.8934 -0.5138 -0.8900 28 1 1.6766 1.9563 -0.8900 29 1 1.6767 1.9564 0.8899 30 1 8.2170 0.5524 -0.3669 31 1 8.2177 2.3322 -0.3678 32 1 10.7003 1.4412 -0.9203 33 1 15.1703 1.4393 -0.2978 34 1 3.8676 0.5145 2.7617 35 1 4.6165 1.9838 2.9763 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000808053493.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:47:15 Heat of formation + Delta-G solvation = 56.479125 kcal Electronic energy + Delta-G solvation = -19332.419881 eV Core-core repulsion = 16107.843833 eV Total energy + Delta-G solvation = -3224.576047 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 285.100 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -43.07230 -38.49346 -36.66460 -35.55082 -34.20272 -31.89828 -31.18749 -29.88139 -29.60187 -27.19691 -24.62664 -23.17692 -22.44038 -21.06858 -19.80824 -19.02320 -18.22345 -17.64389 -16.79450 -16.12676 -15.52440 -15.28563 -15.12086 -14.91579 -14.75171 -13.88152 -13.55711 -13.46164 -12.81558 -12.65554 -12.39301 -12.32348 -12.12920 -11.82969 -11.68844 -11.57710 -11.26018 -11.10906 -10.88249 -10.66885 -10.38292 -10.09569 -10.05877 -9.76131 -9.73604 -8.88190 -8.35180 -7.62921 -6.44202 -3.97098 0.96225 1.43662 2.03492 2.07319 2.62559 2.97726 3.02937 3.11137 3.47582 3.80934 4.00879 4.37993 4.40453 4.58352 4.65773 4.91279 5.06037 5.06395 5.22022 5.32558 5.42040 5.42785 5.43135 5.51344 5.62340 5.70991 5.79783 5.87604 5.94613 6.13042 7.15828 7.39179 7.95089 8.38730 8.47009 8.76882 9.24733 9.56849 10.67629 Molecular weight = 285.10amu Principal moments of inertia in cm(-1) A = 0.036866 B = 0.003199 C = 0.002993 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 759.320259 B = 8751.214790 C = 9353.680449 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.118 4.118 3 C -0.027 4.027 4 C 0.209 3.791 5 N -0.282 5.282 6 N -0.285 5.285 7 C 0.111 3.889 8 S 0.071 5.929 9 C -0.124 4.124 10 C 0.458 3.542 11 O -0.568 6.568 12 N -0.570 5.570 13 C -0.310 4.310 14 H 0.123 0.877 15 C 0.047 3.953 16 N -0.871 5.871 17 Si 0.878 3.122 18 H -0.268 1.268 19 H -0.274 1.274 20 H -0.266 1.266 21 N -0.308 5.308 22 N -0.583 5.583 23 H 0.057 0.943 24 H 0.056 0.944 25 H 0.058 0.942 26 H 0.060 0.940 27 H 0.069 0.931 28 H 0.097 0.903 29 H 0.091 0.909 30 H 0.113 0.887 31 H 0.113 0.887 32 H 0.375 0.625 33 H 0.276 0.724 34 H 0.364 0.636 35 H 0.379 0.621 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.885 -1.445 -0.061 24.927 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.157 4.157 3 C -0.067 4.067 4 C -0.060 4.060 5 N -0.123 5.123 6 N -0.130 5.130 7 C -0.265 4.265 8 S 0.297 5.703 9 C -0.277 4.277 10 C 0.243 3.757 11 O -0.453 6.453 12 N -0.208 5.208 13 C -0.439 4.439 14 H 0.140 0.860 15 C -0.158 4.158 16 N -0.510 5.510 17 Si 0.704 3.296 18 H -0.193 1.193 19 H -0.199 1.199 20 H -0.192 1.192 21 N -0.091 5.091 22 N -0.214 5.214 23 H 0.076 0.924 24 H 0.075 0.925 25 H 0.077 0.923 26 H 0.079 0.921 27 H 0.088 0.912 28 H 0.116 0.884 29 H 0.110 0.890 30 H 0.131 0.869 31 H 0.132 0.868 32 H 0.209 0.791 33 H 0.087 0.913 34 H 0.182 0.818 35 H 0.197 0.803 Dipole moment (debyes) X Y Z Total from point charges -24.576 -1.069 0.180 24.600 hybrid contribution 0.477 -0.475 -1.181 1.360 sum -24.099 -1.544 -1.001 24.169 Atomic orbital electron populations 1.21746 0.94824 1.02041 1.02145 1.21488 0.96302 0.95218 1.02674 1.20080 0.82953 0.98827 1.04823 1.24949 0.96538 1.04005 0.80517 1.74049 0.96553 1.18698 1.22962 1.74731 1.11817 1.20115 1.06323 1.28115 0.92434 1.08911 0.96997 1.86016 0.87035 1.92136 1.05083 1.23672 0.95612 1.08202 1.00206 1.18737 0.83842 0.85794 0.87368 1.90596 1.85435 1.55453 1.13775 1.42063 1.06046 1.65158 1.07521 1.19451 0.79273 1.48836 0.96332 0.85951 1.25060 0.94870 0.97003 0.98850 1.69614 0.97592 1.47779 1.36018 0.86683 0.78773 0.79245 0.84912 1.19291 1.19872 1.19178 1.45148 1.03758 1.56739 1.03465 1.59783 1.50548 1.21596 0.89505 0.92408 0.92456 0.92309 0.92091 0.91239 0.88427 0.89047 0.86912 0.86848 0.79130 0.91293 0.81800 0.80334 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.79 9.91 37.16 0.37 -0.42 16 2 C -0.12 -0.84 5.92 -26.73 -0.16 -0.99 16 3 C -0.03 -0.22 5.76 -27.89 -0.16 -0.38 16 4 C 0.21 2.60 7.43 -153.99 -1.14 1.46 16 5 N -0.28 -4.45 12.18 32.99 0.40 -4.05 16 6 N -0.29 -4.83 11.60 30.68 0.36 -4.47 16 7 C 0.11 1.65 8.13 -88.34 -0.72 0.93 16 8 S 0.07 1.09 21.11 -107.50 -2.27 -1.18 16 9 C -0.12 -2.15 5.72 36.01 0.21 -1.94 16 10 C 0.46 10.22 7.80 -10.98 -0.09 10.13 16 11 O -0.57 -14.68 15.44 5.55 0.09 -14.59 16 12 N -0.57 -13.37 5.09 -10.96 -0.06 -13.42 16 13 C -0.31 -8.56 10.16 -14.93 -0.15 -8.71 16 14 H 0.12 3.84 7.39 -52.49 -0.39 3.45 16 15 C 0.05 1.26 5.50 -17.47 -0.10 1.16 16 16 N -0.87 -24.81 13.96 55.50 0.77 -24.04 16 17 Si 0.88 19.04 27.73 -169.99 -4.71 14.32 16 18 H -0.27 -5.70 7.11 56.52 0.40 -5.30 16 19 H -0.27 -5.93 7.11 56.52 0.40 -5.53 16 20 H -0.27 -5.32 6.52 56.52 0.37 -4.95 16 21 N -0.31 -3.71 3.81 -9.93 -0.04 -3.74 16 22 N -0.58 -4.73 10.39 60.35 0.63 -4.10 16 23 H 0.06 0.29 8.14 -51.93 -0.42 -0.14 16 24 H 0.06 0.27 8.14 -51.93 -0.42 -0.16 16 25 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 26 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 27 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 28 H 0.10 0.73 8.14 -51.93 -0.42 0.31 16 29 H 0.09 0.64 8.14 -51.93 -0.42 0.21 16 30 H 0.11 1.80 8.14 -51.92 -0.42 1.38 16 31 H 0.11 1.81 8.14 -51.92 -0.42 1.38 16 32 H 0.38 7.77 5.76 -40.82 -0.24 7.53 16 33 H 0.28 7.25 8.31 -40.82 -0.34 6.91 16 34 H 0.36 2.18 9.21 -181.36 -1.67 0.51 16 35 H 0.38 2.80 8.80 -181.37 -1.60 1.21 16 LS Contribution 321.13 15.07 4.84 4.84 Total: -1.00 -33.56 321.13 -8.80 -42.36 By element: Atomic # 1 Polarization: 13.72 SS G_CDS: -6.86 Total: 6.85 kcal Atomic # 6 Polarization: 3.17 SS G_CDS: -1.94 Total: 1.22 kcal Atomic # 7 Polarization: -55.90 SS G_CDS: 2.07 Total: -53.83 kcal Atomic # 8 Polarization: -14.68 SS G_CDS: 0.09 Total: -14.59 kcal Atomic # 14 Polarization: 19.04 SS G_CDS: -4.71 Total: 14.32 kcal Atomic # 16 Polarization: 1.09 SS G_CDS: -2.27 Total: -1.18 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -33.56 -8.80 -42.36 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000808053493.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.837 kcal (2) G-P(sol) polarization free energy of solvation -33.561 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.276 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.797 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.357 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.479 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds