Wall clock time and date at job start Wed Apr 15 2020 11:47:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47060 * 2 1 4 4 C 1.50697 * 109.47466 * 180.02562 * 3 2 1 5 5 N 1.30302 * 126.33874 * 90.02582 * 4 3 2 6 6 N 1.28526 * 110.07912 * 179.97438 * 5 4 3 7 7 C 1.31289 * 109.85218 * 359.97438 * 6 5 4 8 8 S 1.76200 * 126.48201 * 179.97438 * 7 6 5 9 9 C 1.81004 * 99.99950 * 359.97438 * 8 7 6 10 10 C 1.50703 * 109.47116 * 180.02562 * 9 8 7 11 11 O 1.21290 * 120.00078 * 359.97438 * 10 9 8 12 12 N 1.34781 * 120.00000 * 180.02562 * 10 9 8 13 13 C 1.37098 * 119.99819 * 179.97438 * 12 10 9 14 14 H 1.07996 * 119.99717 * 359.97438 * 13 12 10 15 15 C 1.38954 * 119.99759 * 179.97438 * 13 12 10 16 16 N 1.31405 * 119.99794 * 179.97438 * 15 13 12 17 17 Si 1.86796 * 119.99812 * 359.97438 * 15 13 12 18 18 H 1.48498 * 109.47180 * 90.00268 * 17 15 13 19 19 H 1.48502 * 109.47221 * 210.00013 * 17 15 13 20 20 H 1.48498 * 109.47496 * 329.99922 * 17 15 13 21 21 N 1.36530 * 107.03454 * 359.77532 * 7 6 5 22 22 N 1.36601 * 127.14517 * 180.22792 * 21 7 6 23 23 H 1.09004 * 109.46724 * 180.02562 * 1 2 3 24 24 H 1.09001 * 109.47194 * 299.99650 * 1 2 3 25 25 H 1.08992 * 109.47399 * 59.99823 * 1 2 3 26 26 H 1.09002 * 109.47398 * 120.00169 * 2 1 3 27 27 H 1.09001 * 109.47194 * 240.00350 * 2 1 3 28 28 H 1.09002 * 109.47153 * 300.00319 * 3 2 1 29 29 H 1.08998 * 109.47533 * 59.99948 * 3 2 1 30 30 H 1.09000 * 109.47168 * 299.99818 * 9 8 7 31 31 H 1.08993 * 109.47526 * 59.99605 * 9 8 7 32 32 H 0.96994 * 119.99945 * 359.97438 * 12 10 9 33 33 H 0.97007 * 119.99687 * 179.97438 * 16 15 13 34 34 H 1.00900 * 111.00601 * 270.14695 * 22 21 7 35 35 H 1.00897 * 110.99833 * 34.10185 * 22 21 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5469 1.4426 -0.0006 5 7 4.3186 1.4433 -1.0506 6 7 5.5526 1.4437 -0.6912 7 6 5.6354 1.4438 0.6190 8 16 7.1154 1.4437 1.5752 9 6 8.3467 1.4426 0.2485 10 6 9.7299 1.4417 0.8469 11 8 9.8694 1.4423 2.0517 12 7 10.8119 1.4413 0.0432 13 6 12.0701 1.4411 0.5875 14 1 12.1943 1.4416 1.6603 15 6 13.1856 1.4401 -0.2411 16 7 14.3916 1.4404 0.2807 17 14 12.9706 1.4385 -2.0966 18 1 12.9139 2.8381 -2.5896 19 1 14.1179 0.7376 -2.7273 20 1 11.7091 0.7383 -2.4482 21 7 4.3579 1.4486 1.1005 22 7 3.9701 1.4548 2.4103 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3634 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8899 26 1 1.8934 -0.5139 0.8900 27 1 1.8934 -0.5138 -0.8900 28 1 1.6766 1.9563 -0.8900 29 1 1.6767 1.9564 0.8899 30 1 8.2170 0.5524 -0.3669 31 1 8.2177 2.3322 -0.3678 32 1 10.7003 1.4412 -0.9203 33 1 15.1703 1.4393 -0.2978 34 1 3.8676 0.5145 2.7617 35 1 4.6165 1.9838 2.9763 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000808053493.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:47:14 Heat of formation + Delta-G solvation = 32.528516 kcal Electronic energy + Delta-G solvation = -19333.458457 eV Core-core repulsion = 16107.843833 eV Total energy + Delta-G solvation = -3225.614624 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 285.100 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -44.10529 -40.38228 -37.56318 -36.20821 -36.16121 -33.91560 -32.15104 -31.14772 -30.73472 -27.94838 -26.58482 -24.24627 -23.13910 -21.89129 -21.60202 -20.67809 -19.58125 -18.50112 -17.97113 -17.83154 -16.80263 -16.55051 -16.29683 -15.99119 -15.82708 -15.40516 -15.02358 -14.67860 -14.22159 -14.04199 -13.91870 -13.32665 -13.03656 -13.00706 -12.73966 -12.48518 -12.43120 -12.20299 -12.04266 -12.00873 -11.63661 -11.62538 -11.47481 -11.08616 -10.78899 -10.64259 -10.37127 -8.82443 -8.48958 -6.11436 -0.23956 0.42444 0.77990 1.13148 1.28455 1.31537 1.41639 1.55026 1.70735 2.17393 2.67791 3.02785 3.06072 3.59472 3.86614 3.90335 3.99370 4.09485 4.22292 4.25980 4.30105 4.43726 4.73791 4.83109 4.91763 4.98097 5.24007 5.31154 5.42604 5.46162 5.50476 5.82886 6.31203 6.42148 6.72439 7.21888 7.39779 7.70286 8.67203 Molecular weight = 285.10amu Principal moments of inertia in cm(-1) A = 0.036866 B = 0.003199 C = 0.002993 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 759.320259 B = 8751.214790 C = 9353.680449 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.113 4.113 3 C -0.025 4.025 4 C 0.223 3.777 5 N -0.319 5.319 6 N -0.313 5.313 7 C 0.101 3.899 8 S 0.078 5.922 9 C -0.119 4.119 10 C 0.465 3.535 11 O -0.607 6.607 12 N -0.572 5.572 13 C -0.332 4.332 14 H 0.065 0.935 15 C -0.005 4.005 16 N -0.922 5.922 17 Si 0.957 3.043 18 H -0.256 1.256 19 H -0.271 1.271 20 H -0.235 1.235 21 N -0.304 5.304 22 N -0.572 5.572 23 H 0.060 0.940 24 H 0.067 0.933 25 H 0.062 0.938 26 H 0.061 0.939 27 H 0.054 0.946 28 H 0.106 0.894 29 H 0.110 0.890 30 H 0.131 0.869 31 H 0.132 0.868 32 H 0.392 0.608 33 H 0.282 0.718 34 H 0.379 0.621 35 H 0.384 0.616 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.756 -1.502 -1.563 27.840 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.152 4.152 3 C -0.064 4.064 4 C -0.047 4.047 5 N -0.159 5.159 6 N -0.158 5.158 7 C -0.275 4.275 8 S 0.305 5.695 9 C -0.271 4.271 10 C 0.251 3.749 11 O -0.493 6.493 12 N -0.212 5.212 13 C -0.461 4.461 14 H 0.083 0.917 15 C -0.205 4.205 16 N -0.561 5.561 17 Si 0.777 3.223 18 H -0.180 1.180 19 H -0.196 1.196 20 H -0.158 1.158 21 N -0.085 5.085 22 N -0.205 5.205 23 H 0.080 0.920 24 H 0.086 0.914 25 H 0.081 0.919 26 H 0.080 0.920 27 H 0.073 0.927 28 H 0.124 0.876 29 H 0.128 0.872 30 H 0.149 0.851 31 H 0.150 0.850 32 H 0.228 0.772 33 H 0.092 0.908 34 H 0.199 0.801 35 H 0.203 0.797 Dipole moment (debyes) X Y Z Total from point charges -27.480 -1.134 -1.312 27.535 hybrid contribution 1.236 -0.458 -0.528 1.420 sum -26.244 -1.591 -1.840 26.356 Atomic orbital electron populations 1.21719 0.93193 1.02554 1.02878 1.21442 0.97594 0.94151 1.01995 1.20325 0.80091 0.99895 1.06134 1.25683 0.97864 1.01361 0.79833 1.73978 0.96592 1.20769 1.24608 1.74624 1.12837 1.21017 1.07343 1.27939 0.93152 1.09714 0.96731 1.85961 0.86888 1.92643 1.04046 1.23488 0.92675 1.10015 1.00915 1.19560 0.85468 0.83063 0.86839 1.90582 1.86607 1.56291 1.15855 1.41880 1.04936 1.65929 1.08453 1.19036 0.81803 1.51004 0.94267 0.91656 1.26041 0.93786 0.95575 1.05142 1.69770 0.98856 1.48829 1.38666 0.85474 0.80156 0.80159 0.76556 1.18005 1.19567 1.15803 1.45245 1.02667 1.55710 1.04894 1.59910 1.49891 1.22799 0.87926 0.92047 0.91411 0.91904 0.92011 0.92739 0.87570 0.87210 0.85070 0.84985 0.77155 0.90779 0.80136 0.79679 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.14 9.91 71.98 0.71 -0.43 16 2 C -0.11 -1.33 5.92 30.59 0.18 -1.15 16 3 C -0.02 -0.34 5.76 29.85 0.17 -0.17 16 4 C 0.22 5.09 7.43 137.63 1.02 6.11 16 5 N -0.32 -9.66 12.18 -49.53 -0.60 -10.26 16 6 N -0.31 -10.19 11.60 -56.85 -0.66 -10.85 16 7 C 0.10 2.86 8.13 179.55 1.46 4.32 16 8 S 0.08 2.33 21.11 -56.49 -1.19 1.14 16 9 C -0.12 -3.93 5.72 71.24 0.41 -3.52 16 10 C 0.46 20.70 7.80 87.66 0.68 21.39 16 11 O -0.61 -32.15 15.44 -3.06 -0.05 -32.19 16 12 N -0.57 -26.73 5.09 -306.98 -1.56 -28.30 16 13 C -0.33 -18.96 10.16 84.04 0.85 -18.11 16 14 H 0.07 4.39 7.39 -2.91 -0.02 4.37 16 15 C 0.00 -0.26 5.50 84.93 0.47 0.20 16 16 N -0.92 -54.12 13.96 21.66 0.30 -53.82 16 17 Si 0.96 38.37 27.73 68.60 1.90 40.27 16 18 H -0.26 -9.78 7.11 99.48 0.71 -9.08 16 19 H -0.27 -10.73 7.11 99.48 0.71 -10.02 16 20 H -0.23 -8.13 6.52 99.48 0.65 -7.48 16 21 N -0.30 -6.68 3.81 -185.33 -0.71 -7.38 16 22 N -0.57 -7.83 10.39 37.02 0.38 -7.44 16 23 H 0.06 0.46 8.14 -2.39 -0.02 0.44 16 24 H 0.07 0.41 8.14 -2.39 -0.02 0.39 16 25 H 0.06 0.45 8.14 -2.39 -0.02 0.43 16 26 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 27 H 0.05 0.82 8.14 -2.39 -0.02 0.80 16 28 H 0.11 1.32 8.14 -2.39 -0.02 1.30 16 29 H 0.11 1.14 8.14 -2.39 -0.02 1.12 16 30 H 0.13 3.91 8.14 -2.40 -0.02 3.89 16 31 H 0.13 3.93 8.14 -2.40 -0.02 3.91 16 32 H 0.39 15.46 5.76 -92.71 -0.53 14.92 16 33 H 0.28 15.13 8.31 -92.70 -0.77 14.36 16 34 H 0.38 3.52 9.21 -210.56 -1.94 1.58 16 35 H 0.38 4.82 8.80 -210.56 -1.85 2.96 16 Total: -1.00 -76.14 321.13 0.55 -75.59 By element: Atomic # 1 Polarization: 27.82 SS G_CDS: -3.23 Total: 24.59 kcal Atomic # 6 Polarization: 2.69 SS G_CDS: 5.96 Total: 8.65 kcal Atomic # 7 Polarization: -115.20 SS G_CDS: -2.84 Total: -118.05 kcal Atomic # 8 Polarization: -32.15 SS G_CDS: -0.05 Total: -32.19 kcal Atomic # 14 Polarization: 38.37 SS G_CDS: 1.90 Total: 40.27 kcal Atomic # 16 Polarization: 2.33 SS G_CDS: -1.19 Total: 1.14 kcal Total: -76.14 0.55 -75.59 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000808053493.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.120 kcal (2) G-P(sol) polarization free energy of solvation -76.141 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.978 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.550 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.591 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.529 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds