Wall clock time and date at job start Wed Apr 15 2020 11:47:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.46206 * 126.96426 * 2 1 4 4 C 1.39736 * 134.18090 * 0.02562 * 3 2 1 5 5 C 1.36615 * 119.70618 * 179.97438 * 4 3 2 6 6 C 1.38840 * 120.44752 * 0.02854 * 5 4 3 7 7 C 1.37821 * 120.74410 * 359.97336 * 6 5 4 8 8 C 1.39002 * 119.85632 * 0.02562 * 7 6 5 9 9 O 1.34738 * 133.21649 * 180.33089 * 8 7 6 10 10 C 1.34958 * 110.86036 * 180.12077 * 9 8 7 11 11 C 1.46806 * 125.14466 * 179.85451 * 10 9 8 12 12 O 1.21702 * 119.99937 * 183.63260 * 11 10 9 13 13 N 1.34779 * 119.99659 * 3.63527 * 11 10 9 14 14 C 1.36793 * 119.99340 * 185.60673 * 13 11 10 15 15 H 1.08002 * 119.99730 * 230.97762 * 14 13 11 16 16 C 1.39070 * 120.00281 * 50.98286 * 14 13 11 17 17 N 1.31356 * 119.99996 * 177.16492 * 16 14 13 18 18 Si 1.86802 * 119.99835 * 357.16268 * 16 14 13 19 19 H 1.48495 * 109.47476 * 274.09051 * 18 16 14 20 20 H 1.48497 * 109.47214 * 34.09378 * 18 16 14 21 21 H 1.48510 * 109.46977 * 154.09086 * 18 16 14 22 22 C 1.46498 * 120.00382 * 5.60123 * 13 11 10 23 23 C 1.53002 * 117.49622 * 181.93993 * 22 13 11 24 24 C 1.53002 * 117.49565 * 113.31861 * 22 13 11 25 25 H 1.08998 * 109.47168 * 269.99897 * 1 2 3 26 26 H 1.09000 * 109.46721 * 29.99995 * 1 2 3 27 27 H 1.09000 * 109.46991 * 150.00128 * 1 2 3 28 28 H 1.08002 * 120.14207 * 359.95808 * 4 3 2 29 29 H 1.08006 * 119.77992 * 180.02562 * 5 4 3 30 30 H 1.08001 * 119.62728 * 179.97438 * 6 5 4 31 31 H 1.07995 * 120.06994 * 179.97438 * 7 6 5 32 32 H 0.96998 * 119.99554 * 179.97438 * 17 16 14 33 33 H 1.08998 * 115.55029 * 327.65277 * 22 13 11 34 34 H 1.08994 * 117.50324 * 0.02562 * 23 22 13 35 35 H 1.09004 * 117.49518 * 145.02713 * 23 22 13 36 36 H 1.09005 * 117.49800 * 214.98047 * 24 22 13 37 37 H 1.08999 * 117.50161 * 359.97438 * 24 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3862 1.1682 0.0000 4 6 2.1711 2.5489 0.0004 5 6 3.2394 3.4005 0.0008 6 6 4.5356 2.9031 0.0002 7 6 4.7691 1.5448 -0.0003 8 6 3.6982 0.6586 -0.0007 9 8 3.6134 -0.6861 0.0045 10 6 2.3246 -1.0863 -0.0014 11 6 1.8735 -2.4834 -0.0012 12 8 0.6860 -2.7395 -0.0735 13 7 2.7747 -3.4824 0.0792 14 6 2.3662 -4.7828 -0.0359 15 1 2.6612 -5.5092 0.7069 16 6 1.5711 -5.1695 -1.1093 17 7 1.2250 -6.4288 -1.2502 18 14 0.9952 -3.8981 -2.3508 19 1 -0.2544 -3.2608 -1.8635 20 1 2.0452 -2.8620 -2.5216 21 1 0.7370 -4.5608 -3.6545 22 6 4.1917 -3.1756 0.2897 23 6 5.1709 -4.3506 0.3266 24 6 4.8184 -3.6077 1.6169 25 1 -0.3633 0.0000 1.0276 26 1 -0.3633 0.8900 -0.5138 27 1 -0.3633 -0.8900 -0.5138 28 1 1.1648 2.9410 0.0002 29 1 3.0745 4.4679 0.0016 30 1 5.3704 3.5884 0.0001 31 1 5.7818 1.1699 -0.0012 32 1 0.6701 -6.6984 -1.9987 33 1 4.5412 -2.2423 -0.1517 34 1 4.7611 -5.3518 0.1939 35 1 6.1651 -4.1904 -0.0907 36 1 5.5806 -2.9588 2.0484 37 1 4.1764 -4.1198 2.3336 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000058306134.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:47:09 Heat of formation + Delta-G solvation = 41.813941 kcal Electronic energy + Delta-G solvation = -22726.015138 eV Core-core repulsion = 19436.606802 eV Total energy + Delta-G solvation = -3289.408337 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 285.115 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -42.25223 -39.14066 -37.67539 -36.65131 -33.71105 -33.02696 -31.66156 -30.46886 -29.73327 -27.43864 -25.47236 -23.29614 -22.64838 -21.84014 -21.37263 -20.29833 -19.51095 -18.14409 -17.03753 -16.28904 -16.19864 -16.01069 -15.26903 -14.95458 -14.41362 -13.98604 -13.83648 -13.57671 -13.31125 -13.11950 -12.81744 -12.62669 -12.50204 -12.18096 -12.08756 -11.59884 -11.41783 -11.28123 -10.95087 -10.79817 -10.33328 -10.21493 -9.90889 -9.79564 -9.65106 -8.99029 -8.69567 -8.53526 -7.90024 -7.55993 -6.35438 -4.23801 0.82137 1.41203 2.14775 2.82773 3.36576 3.39138 3.59176 3.74488 3.89823 4.12679 4.37876 4.58686 4.66333 4.72629 4.90530 5.02854 5.10928 5.23324 5.38114 5.39950 5.57436 5.60013 5.61982 5.75791 5.78845 6.02704 6.08739 6.15058 6.18469 6.25383 6.39359 6.42845 6.48447 6.66078 6.69087 6.77997 6.88775 7.27575 7.64362 7.86850 8.52280 8.61388 9.17181 9.52472 10.66767 Molecular weight = 285.12amu Principal moments of inertia in cm(-1) A = 0.020137 B = 0.006727 C = 0.005502 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1390.123348 B = 4161.234292 C = 5087.719149 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 C -0.125 4.125 3 C -0.128 4.128 4 C -0.067 4.067 5 C -0.143 4.143 6 C -0.099 4.099 7 C -0.108 4.108 8 C 0.051 3.949 9 O -0.176 6.176 10 C 0.010 3.990 11 C 0.515 3.485 12 O -0.519 6.519 13 N -0.416 5.416 14 C -0.330 4.330 15 H 0.102 0.898 16 C 0.083 3.917 17 N -0.862 5.862 18 Si 0.918 3.082 19 H -0.245 1.245 20 H -0.284 1.284 21 H -0.309 1.309 22 C 0.054 3.946 23 C -0.166 4.166 24 C -0.194 4.194 25 H 0.070 0.930 26 H 0.059 0.941 27 H 0.092 0.908 28 H 0.125 0.875 29 H 0.126 0.874 30 H 0.131 0.869 31 H 0.131 0.869 32 H 0.277 0.723 33 H 0.128 0.872 34 H 0.115 0.885 35 H 0.089 0.911 36 H 0.088 0.912 37 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.525 16.158 2.091 17.551 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.128 4.128 3 C -0.129 4.129 4 C -0.085 4.085 5 C -0.161 4.161 6 C -0.117 4.117 7 C -0.127 4.127 8 C 0.003 3.997 9 O -0.078 6.078 10 C -0.040 4.040 11 C 0.306 3.694 12 O -0.404 6.404 13 N -0.133 5.133 14 C -0.456 4.456 15 H 0.119 0.881 16 C -0.127 4.127 17 N -0.496 5.496 18 Si 0.750 3.250 19 H -0.171 1.171 20 H -0.210 1.210 21 H -0.239 1.239 22 C -0.051 4.051 23 C -0.204 4.204 24 C -0.233 4.233 25 H 0.089 0.911 26 H 0.078 0.922 27 H 0.111 0.889 28 H 0.143 0.857 29 H 0.144 0.856 30 H 0.149 0.851 31 H 0.149 0.851 32 H 0.087 0.913 33 H 0.145 0.855 34 H 0.133 0.867 35 H 0.107 0.893 36 H 0.107 0.893 37 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 6.069 15.620 1.974 16.874 hybrid contribution -0.161 0.628 -0.605 0.887 sum 5.908 16.248 1.369 17.343 Atomic orbital electron populations 1.20346 0.87920 1.03413 1.02614 1.21243 0.96866 0.89298 1.05415 1.19856 0.92630 0.94189 1.06186 1.20308 0.99495 0.90446 0.98257 1.20694 0.92338 0.99637 1.03472 1.20884 0.97268 0.93704 0.99822 1.19942 0.96593 0.91224 1.04892 1.19941 0.95458 0.82430 1.01899 1.84325 1.27710 1.19642 1.76113 1.22617 0.80188 0.96000 1.05209 1.16933 0.86576 0.81136 0.84723 1.90671 1.14927 1.80924 1.53902 1.43041 1.03201 1.05875 1.61230 1.18787 1.34355 0.82544 1.09930 0.88077 1.25461 0.94505 0.96109 0.96640 1.69637 1.33575 1.16006 1.30391 0.86219 0.81591 0.80114 0.77120 1.17065 1.21005 1.23852 1.22252 0.83302 0.98827 1.00716 1.23178 0.98330 0.98756 1.00115 1.23258 1.03529 1.04448 0.92046 0.91131 0.92179 0.88900 0.85683 0.85624 0.85083 0.85127 0.91322 0.85498 0.86715 0.89276 0.89332 0.88765 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.49 9.86 36.01 0.35 -1.14 16 2 C -0.12 -2.40 6.39 -102.24 -0.65 -3.06 16 3 C -0.13 -2.13 6.37 -105.19 -0.67 -2.80 16 4 C -0.07 -0.88 10.06 -39.61 -0.40 -1.27 16 5 C -0.14 -1.55 9.98 -39.95 -0.40 -1.95 16 6 C -0.10 -1.05 10.01 -39.51 -0.40 -1.44 16 7 C -0.11 -1.40 10.07 -39.45 -0.40 -1.79 16 8 C 0.05 0.85 7.40 -38.35 -0.28 0.57 16 9 O -0.18 -3.41 7.00 2.68 0.02 -3.39 16 10 C 0.01 0.21 6.80 -36.94 -0.25 -0.04 16 11 C 0.52 12.89 5.23 -12.80 -0.07 12.82 16 12 O -0.52 -14.07 10.06 5.19 0.05 -14.02 16 13 N -0.42 -10.34 2.53 -109.16 -0.28 -10.62 16 14 C -0.33 -9.14 8.21 -15.03 -0.12 -9.26 16 15 H 0.10 2.91 7.69 -52.49 -0.40 2.51 16 16 C 0.08 2.38 5.33 -17.45 -0.09 2.29 16 17 N -0.86 -25.38 13.95 55.50 0.77 -24.61 16 18 Si 0.92 24.44 24.30 -169.99 -4.13 20.30 16 19 H -0.24 -6.66 6.20 56.52 0.35 -6.31 16 20 H -0.28 -7.56 6.77 56.52 0.38 -7.17 16 21 H -0.31 -8.01 7.11 56.52 0.40 -7.61 16 22 C 0.05 1.10 5.62 -67.93 -0.38 0.72 16 23 C -0.17 -3.01 9.82 -26.73 -0.26 -3.27 16 24 C -0.19 -3.40 10.37 -26.73 -0.28 -3.68 16 25 H 0.07 1.13 8.14 -51.93 -0.42 0.70 16 26 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 27 H 0.09 1.86 6.30 -51.93 -0.33 1.53 16 28 H 0.13 1.36 8.06 -52.49 -0.42 0.94 16 29 H 0.13 0.98 8.06 -52.48 -0.42 0.56 16 30 H 0.13 0.96 8.06 -52.49 -0.42 0.54 16 31 H 0.13 1.39 8.06 -52.49 -0.42 0.96 16 32 H 0.28 7.67 8.31 -40.82 -0.34 7.33 16 33 H 0.13 2.48 5.09 -51.93 -0.26 2.22 16 34 H 0.11 2.33 6.84 -51.93 -0.36 1.98 16 35 H 0.09 1.34 8.14 -51.93 -0.42 0.92 16 36 H 0.09 1.30 8.14 -51.93 -0.42 0.87 16 37 H 0.09 1.76 8.14 -51.93 -0.42 1.33 16 LS Contribution 306.62 15.07 4.62 4.62 Total: -1.00 -31.72 306.62 -7.60 -39.32 By element: Atomic # 1 Polarization: 6.07 SS G_CDS: -4.36 Total: 1.71 kcal Atomic # 6 Polarization: -9.03 SS G_CDS: -4.30 Total: -13.33 kcal Atomic # 7 Polarization: -35.72 SS G_CDS: 0.50 Total: -35.22 kcal Atomic # 8 Polarization: -17.48 SS G_CDS: 0.07 Total: -17.41 kcal Atomic # 14 Polarization: 24.44 SS G_CDS: -4.13 Total: 20.30 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -31.72 -7.60 -39.32 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000058306134.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.130 kcal (2) G-P(sol) polarization free energy of solvation -31.717 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.413 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.599 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.316 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.814 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds