Wall clock time and date at job start Wed Apr 15 2020 11:47:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.46206 * 126.96426 * 2 1 4 4 C 1.39736 * 134.18090 * 0.02562 * 3 2 1 5 5 C 1.36615 * 119.70618 * 179.97438 * 4 3 2 6 6 C 1.38840 * 120.44752 * 0.02854 * 5 4 3 7 7 C 1.37821 * 120.74410 * 359.97336 * 6 5 4 8 8 C 1.39002 * 119.85632 * 0.02562 * 7 6 5 9 9 O 1.34738 * 133.21649 * 180.33089 * 8 7 6 10 10 C 1.34958 * 110.86036 * 180.12077 * 9 8 7 11 11 C 1.46806 * 125.14466 * 179.85451 * 10 9 8 12 12 O 1.21702 * 119.99937 * 183.63260 * 11 10 9 13 13 N 1.34779 * 119.99659 * 3.63527 * 11 10 9 14 14 C 1.36793 * 119.99340 * 185.60673 * 13 11 10 15 15 H 1.08002 * 119.99730 * 230.97762 * 14 13 11 16 16 C 1.39070 * 120.00281 * 50.98286 * 14 13 11 17 17 N 1.31356 * 119.99996 * 177.16492 * 16 14 13 18 18 Si 1.86802 * 119.99835 * 357.16268 * 16 14 13 19 19 H 1.48495 * 109.47476 * 274.09051 * 18 16 14 20 20 H 1.48497 * 109.47214 * 34.09378 * 18 16 14 21 21 H 1.48510 * 109.46977 * 154.09086 * 18 16 14 22 22 C 1.46498 * 120.00382 * 5.60123 * 13 11 10 23 23 C 1.53002 * 117.49622 * 181.93993 * 22 13 11 24 24 C 1.53002 * 117.49565 * 113.31861 * 22 13 11 25 25 H 1.08998 * 109.47168 * 269.99897 * 1 2 3 26 26 H 1.09000 * 109.46721 * 29.99995 * 1 2 3 27 27 H 1.09000 * 109.46991 * 150.00128 * 1 2 3 28 28 H 1.08002 * 120.14207 * 359.95808 * 4 3 2 29 29 H 1.08006 * 119.77992 * 180.02562 * 5 4 3 30 30 H 1.08001 * 119.62728 * 179.97438 * 6 5 4 31 31 H 1.07995 * 120.06994 * 179.97438 * 7 6 5 32 32 H 0.96998 * 119.99554 * 179.97438 * 17 16 14 33 33 H 1.08998 * 115.55029 * 327.65277 * 22 13 11 34 34 H 1.08994 * 117.50324 * 0.02562 * 23 22 13 35 35 H 1.09004 * 117.49518 * 145.02713 * 23 22 13 36 36 H 1.09005 * 117.49800 * 214.98047 * 24 22 13 37 37 H 1.08999 * 117.50161 * 359.97438 * 24 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3862 1.1682 0.0000 4 6 2.1711 2.5489 0.0004 5 6 3.2394 3.4005 0.0008 6 6 4.5356 2.9031 0.0002 7 6 4.7691 1.5448 -0.0003 8 6 3.6982 0.6586 -0.0007 9 8 3.6134 -0.6861 0.0045 10 6 2.3246 -1.0863 -0.0014 11 6 1.8735 -2.4834 -0.0012 12 8 0.6860 -2.7395 -0.0735 13 7 2.7747 -3.4824 0.0792 14 6 2.3662 -4.7828 -0.0359 15 1 2.6612 -5.5092 0.7069 16 6 1.5711 -5.1695 -1.1093 17 7 1.2250 -6.4288 -1.2502 18 14 0.9952 -3.8981 -2.3508 19 1 -0.2544 -3.2608 -1.8635 20 1 2.0452 -2.8620 -2.5216 21 1 0.7370 -4.5608 -3.6545 22 6 4.1917 -3.1756 0.2897 23 6 5.1709 -4.3506 0.3266 24 6 4.8184 -3.6077 1.6169 25 1 -0.3633 0.0000 1.0276 26 1 -0.3633 0.8900 -0.5138 27 1 -0.3633 -0.8900 -0.5138 28 1 1.1648 2.9410 0.0002 29 1 3.0745 4.4679 0.0016 30 1 5.3704 3.5884 0.0001 31 1 5.7818 1.1699 -0.0012 32 1 0.6701 -6.6984 -1.9987 33 1 4.5412 -2.2423 -0.1517 34 1 4.7611 -5.3518 0.1939 35 1 6.1651 -4.1904 -0.0907 36 1 5.5806 -2.9588 2.0484 37 1 4.1764 -4.1198 2.3336 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000058306134.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:47:09 Heat of formation + Delta-G solvation = 22.562784 kcal Electronic energy + Delta-G solvation = -22726.849931 eV Core-core repulsion = 19436.606802 eV Total energy + Delta-G solvation = -3290.243129 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 285.115 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -43.56138 -40.92864 -38.75367 -38.34611 -35.30794 -34.75605 -33.61404 -31.49539 -30.95458 -28.97169 -27.21934 -24.75920 -23.87288 -23.27256 -22.85889 -21.83185 -20.99946 -19.80663 -18.48020 -17.86971 -17.81414 -17.30051 -16.81142 -16.61182 -15.76326 -15.61773 -15.38135 -15.09786 -14.78648 -14.64823 -14.54219 -14.13150 -13.82740 -13.50911 -13.28215 -13.21392 -12.93910 -12.71372 -12.50753 -12.32776 -12.19012 -11.86632 -11.71092 -11.36087 -11.04650 -10.88651 -10.64310 -9.63449 -9.52032 -9.13116 -8.54232 -6.42671 -0.42171 0.38723 0.79233 1.16909 1.25313 1.42340 1.55456 2.05323 2.29073 2.45413 2.75331 2.82270 3.06592 3.36643 3.58331 3.76833 3.90972 4.04427 4.10948 4.16637 4.23879 4.34345 4.45505 4.52758 4.62967 4.67577 4.77146 4.90618 4.94281 5.00335 5.10717 5.31283 5.37641 5.38522 5.43397 5.50234 5.55703 5.60178 5.77731 6.09586 6.52459 6.63099 7.06737 7.55061 8.51691 Molecular weight = 285.12amu Principal moments of inertia in cm(-1) A = 0.020137 B = 0.006727 C = 0.005502 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1390.123348 B = 4161.234292 C = 5087.719149 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.088 4.088 2 C -0.108 4.108 3 C -0.157 4.157 4 C -0.070 4.070 5 C -0.133 4.133 6 C -0.074 4.074 7 C -0.121 4.121 8 C 0.031 3.969 9 O -0.186 6.186 10 C -0.042 4.042 11 C 0.517 3.483 12 O -0.555 6.555 13 N -0.435 5.435 14 C -0.326 4.326 15 H 0.078 0.922 16 C 0.043 3.957 17 N -0.900 5.900 18 Si 0.963 3.037 19 H -0.261 1.261 20 H -0.288 1.288 21 H -0.300 1.300 22 C 0.026 3.974 23 C -0.158 4.158 24 C -0.172 4.172 25 H 0.082 0.918 26 H 0.095 0.905 27 H 0.059 0.941 28 H 0.147 0.853 29 H 0.168 0.832 30 H 0.176 0.824 31 H 0.153 0.847 32 H 0.279 0.721 33 H 0.140 0.860 34 H 0.085 0.915 35 H 0.128 0.872 36 H 0.128 0.872 37 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.760 21.196 2.279 23.048 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.112 4.112 3 C -0.158 4.158 4 C -0.088 4.088 5 C -0.150 4.150 6 C -0.092 4.092 7 C -0.139 4.139 8 C -0.017 4.017 9 O -0.089 6.089 10 C -0.091 4.091 11 C 0.309 3.691 12 O -0.442 6.442 13 N -0.153 5.153 14 C -0.453 4.453 15 H 0.095 0.905 16 C -0.162 4.162 17 N -0.537 5.537 18 Si 0.795 3.205 19 H -0.188 1.188 20 H -0.214 1.214 21 H -0.230 1.230 22 C -0.077 4.077 23 C -0.195 4.195 24 C -0.210 4.210 25 H 0.100 0.900 26 H 0.114 0.886 27 H 0.078 0.922 28 H 0.165 0.835 29 H 0.185 0.815 30 H 0.194 0.806 31 H 0.170 0.830 32 H 0.089 0.911 33 H 0.157 0.843 34 H 0.103 0.897 35 H 0.146 0.854 36 H 0.146 0.854 37 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 8.331 20.663 2.165 22.384 hybrid contribution -0.756 -0.539 -0.530 1.069 sum 7.576 20.124 1.636 21.565 Atomic orbital electron populations 1.20393 0.87196 1.03476 1.03323 1.21707 0.97638 0.90120 1.01706 1.20005 0.91854 0.95126 1.08841 1.20696 1.01701 0.88897 0.97483 1.21255 0.91603 1.01450 1.00716 1.21526 0.98812 0.93162 0.95678 1.20421 0.96685 0.91714 1.05067 1.20593 0.97005 0.81514 1.02547 1.84186 1.26260 1.21412 1.77001 1.21850 0.81986 0.94551 1.10747 1.17396 0.86223 0.82808 0.82643 1.90620 1.16336 1.82302 1.54944 1.43182 1.05214 1.04790 1.62117 1.18588 1.34078 0.83693 1.08948 0.90483 1.25951 0.95154 0.97008 0.98061 1.69688 1.35536 1.16870 1.31607 0.85505 0.80331 0.78518 0.76130 1.18777 1.21398 1.22974 1.22493 0.81251 1.00350 1.03620 1.23211 0.99223 0.96468 1.00643 1.23296 1.03128 1.03819 0.90803 0.89990 0.88632 0.92177 0.83544 0.81469 0.80627 0.82968 0.91118 0.84275 0.89684 0.85407 0.85389 0.90636 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -3.01 9.86 71.24 0.70 -2.31 16 2 C -0.11 -4.14 6.39 -18.32 -0.12 -4.26 16 3 C -0.16 -4.91 6.37 -20.23 -0.13 -5.04 16 4 C -0.07 -1.51 10.06 22.25 0.22 -1.29 16 5 C -0.13 -2.02 9.98 22.03 0.22 -1.80 16 6 C -0.07 -1.10 10.01 22.32 0.22 -0.88 16 7 C -0.12 -2.60 10.07 22.35 0.23 -2.37 16 8 C 0.03 0.97 7.40 23.07 0.17 1.14 16 9 O -0.19 -7.14 7.00 -13.34 -0.09 -7.24 16 10 C -0.04 -1.86 6.80 23.98 0.16 -1.69 16 11 C 0.52 27.01 5.23 86.48 0.45 27.47 16 12 O -0.55 -31.72 10.06 -4.35 -0.04 -31.76 16 13 N -0.44 -22.61 2.53 -617.49 -1.56 -24.17 16 14 C -0.33 -19.11 8.21 84.12 0.69 -18.42 16 15 H 0.08 4.77 7.69 -2.91 -0.02 4.75 16 16 C 0.04 2.64 5.33 84.96 0.45 3.09 16 17 N -0.90 -55.79 13.95 21.68 0.30 -55.49 16 18 Si 0.96 53.03 24.30 68.60 1.67 54.70 16 19 H -0.26 -14.87 6.20 99.48 0.62 -14.25 16 20 H -0.29 -15.76 6.77 99.48 0.67 -15.08 16 21 H -0.30 -15.73 7.11 99.48 0.71 -15.03 16 22 C 0.03 1.09 5.62 44.99 0.25 1.34 16 23 C -0.16 -5.70 9.82 30.60 0.30 -5.40 16 24 C -0.17 -5.92 10.37 30.60 0.32 -5.61 16 25 H 0.08 2.60 8.14 -2.39 -0.02 2.58 16 26 H 0.10 2.52 8.14 -2.39 -0.02 2.50 16 27 H 0.06 2.49 6.30 -2.39 -0.02 2.48 16 28 H 0.15 2.48 8.06 -2.91 -0.02 2.45 16 29 H 0.17 1.26 8.06 -2.91 -0.02 1.24 16 30 H 0.18 1.14 8.06 -2.91 -0.02 1.11 16 31 H 0.15 2.54 8.06 -2.91 -0.02 2.52 16 32 H 0.28 16.23 8.31 -92.71 -0.77 15.46 16 33 H 0.14 5.42 5.09 -2.41 -0.01 5.40 16 34 H 0.08 3.60 6.84 -2.39 -0.02 3.59 16 35 H 0.13 3.56 8.14 -2.39 -0.02 3.54 16 36 H 0.13 3.38 8.14 -2.38 -0.02 3.36 16 37 H 0.08 2.88 8.14 -2.39 -0.02 2.86 16 Total: -1.00 -75.88 306.62 5.39 -70.49 By element: Atomic # 1 Polarization: 8.51 SS G_CDS: 0.97 Total: 9.48 kcal Atomic # 6 Polarization: -20.17 SS G_CDS: 4.15 Total: -16.02 kcal Atomic # 7 Polarization: -78.40 SS G_CDS: -1.26 Total: -79.66 kcal Atomic # 8 Polarization: -38.86 SS G_CDS: -0.14 Total: -39.00 kcal Atomic # 14 Polarization: 53.03 SS G_CDS: 1.67 Total: 54.70 kcal Total: -75.88 5.39 -70.49 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000058306134.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.053 kcal (2) G-P(sol) polarization free energy of solvation -75.882 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.171 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.392 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.490 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.563 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds