Wall clock time and date at job start Wed Apr 15 2020 11:47:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 N 1.40062 * 125.87797 * 2 1 4 4 C 1.30265 * 109.69533 * 180.02562 * 3 2 1 5 5 C 1.41146 * 108.47041 * 359.97438 * 4 3 2 6 6 C 1.36316 * 125.87475 * 180.02562 * 2 1 3 7 7 N 1.33203 * 134.61252 * 359.97438 * 6 2 1 8 8 C 1.31523 * 120.69248 * 179.97438 * 7 6 2 9 9 N 1.32109 * 122.65196 * 359.75206 * 8 7 6 10 10 C 1.32906 * 121.18598 * 0.51816 * 9 8 7 11 11 N 1.38091 * 120.81411 * 179.75120 * 10 9 8 12 12 C 1.40533 * 119.99822 * 359.72675 * 11 10 9 13 13 C 1.40666 * 126.08462 * 359.97340 * 12 11 10 14 14 N 1.30913 * 108.39026 * 180.02562 * 13 12 11 15 15 N 1.40065 * 108.41121 * 0.02562 * 14 13 12 16 16 C 1.37315 * 126.07134 * 179.97438 * 15 14 13 17 17 H 1.08000 * 119.99648 * 180.02562 * 16 15 14 18 18 C 1.38972 * 119.99885 * 0.02805 * 16 15 14 19 19 N 1.31305 * 120.00193 * 359.97438 * 18 16 15 20 20 Si 1.86800 * 119.99875 * 179.97438 * 18 16 15 21 21 H 1.48498 * 109.47155 * 90.00174 * 20 18 16 22 22 H 1.48505 * 109.46899 * 209.99762 * 20 18 16 23 23 H 1.48499 * 109.47123 * 329.99585 * 20 18 16 24 24 C 1.35691 * 126.07881 * 180.26602 * 12 11 10 25 25 H 1.09008 * 109.47131 * 269.96567 * 1 2 3 26 26 H 1.09003 * 109.47228 * 29.96131 * 1 2 3 27 27 H 1.08990 * 109.47263 * 149.96446 * 1 2 3 28 28 H 1.07990 * 125.76673 * 180.02562 * 4 3 2 29 29 H 1.07997 * 118.67199 * 179.97438 * 8 7 6 30 30 H 0.96998 * 119.99968 * 179.72627 * 11 10 9 31 31 H 1.07998 * 125.80585 * 0.02562 * 13 12 11 32 32 H 0.96998 * 120.00213 * 179.97438 * 19 18 16 33 33 H 1.07998 * 126.25124 * 359.97438 * 24 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 7 2.2858 1.1349 0.0000 4 6 3.5368 0.7718 -0.0005 5 6 3.5932 -0.6385 -0.0003 6 6 2.2638 -1.1046 -0.0005 7 7 2.0436 -2.4183 -0.0007 8 6 3.0481 -3.2673 -0.0017 9 7 4.3105 -2.8779 -0.0074 10 6 4.6331 -1.5886 -0.0022 11 7 5.9552 -1.1902 -0.0031 12 6 6.9791 -2.1527 -0.0038 13 6 6.8041 -3.5485 -0.0031 14 7 7.9853 -4.1129 -0.0035 15 7 8.9574 -3.1044 -0.0039 16 6 10.3176 -3.2926 -0.0039 17 1 10.9807 -2.4401 -0.0037 18 6 10.8409 -4.5801 -0.0040 19 7 10.0348 -5.6165 -0.0037 20 14 12.6913 -4.8361 -0.0047 21 1 13.1822 -4.9040 1.3951 22 1 13.0151 -6.1051 -0.7049 23 1 13.3475 -3.7029 -0.7051 24 6 8.3125 -1.9011 0.0004 25 1 -0.3634 -0.0006 1.0277 26 1 -0.3634 0.8903 -0.5132 27 1 -0.3633 -0.8896 -0.5143 28 1 4.3872 1.4374 -0.0003 29 1 2.8322 -4.3255 -0.0014 30 1 6.1772 -0.2459 -0.0033 31 1 5.8564 -4.0664 -0.0024 32 1 10.4000 -6.5151 -0.0042 33 1 8.7785 -0.9268 0.0045 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000142793805.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:47:11 Heat of formation + Delta-G solvation = 216.655052 kcal Electronic energy + Delta-G solvation = -21057.538358 eV Core-core repulsion = 17736.756860 eV Total energy + Delta-G solvation = -3320.781498 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 285.103 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.73817 -39.67129 -38.57075 -35.98962 -33.62905 -33.09296 -31.85406 -30.40530 -29.87443 -27.62643 -26.83913 -24.88916 -24.08115 -22.78660 -21.09967 -20.45228 -19.63925 -18.35109 -17.78432 -17.03007 -16.11545 -15.91020 -15.54025 -15.37218 -14.48099 -14.21189 -14.17014 -14.07486 -13.65082 -13.39233 -12.94498 -12.61717 -12.50892 -11.95213 -11.72988 -11.43497 -11.28444 -11.24014 -10.95879 -10.56648 -10.28399 -10.07311 -9.37035 -8.89090 -8.87864 -8.65184 -8.35118 -8.08655 -6.61225 -6.61092 -4.26558 1.00366 1.71233 2.20401 2.54598 2.93571 3.01987 3.07285 3.36665 3.52811 3.81678 4.14541 4.22705 4.39092 4.44118 4.63543 4.82082 4.95311 4.97264 5.08230 5.12923 5.36239 5.39583 5.47492 6.16182 6.20883 6.28122 6.47042 6.76870 6.82597 6.91265 7.13534 7.25428 7.51372 7.65270 7.84283 8.00525 8.24113 8.62859 8.72478 9.31060 9.61341 10.34448 Molecular weight = 285.10amu Principal moments of inertia in cm(-1) A = 0.048810 B = 0.003423 C = 0.003204 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 573.512611 B = 8178.361708 C = 8736.728390 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.115 3.885 2 N -0.389 5.389 3 N -0.272 5.272 4 C 0.108 3.892 5 C -0.343 4.343 6 C 0.372 3.628 7 N -0.599 5.599 8 C 0.388 3.612 9 N -0.592 5.592 10 C 0.508 3.492 11 N -0.575 5.575 12 C -0.068 4.068 13 C -0.021 4.021 14 N -0.263 5.263 15 N -0.141 5.141 16 C -0.322 4.322 17 H 0.116 0.884 18 C 0.047 3.953 19 N -0.767 5.767 20 Si 0.935 3.065 21 H -0.270 1.270 22 H -0.275 1.275 23 H -0.264 1.264 24 C -0.082 4.082 25 H 0.068 0.932 26 H 0.085 0.915 27 H 0.089 0.911 28 H 0.190 0.810 29 H 0.199 0.801 30 H 0.411 0.589 31 H 0.191 0.809 32 H 0.275 0.725 33 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.813 8.653 -0.074 13.849 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.026 4.026 2 N -0.180 5.180 3 N -0.086 5.086 4 C -0.088 4.088 5 C -0.361 4.361 6 C 0.126 3.874 7 N -0.329 5.329 8 C 0.095 3.905 9 N -0.322 5.322 10 C 0.255 3.745 11 N -0.191 5.191 12 C -0.174 4.174 13 C -0.198 4.198 14 N -0.093 5.093 15 N 0.093 4.907 16 C -0.454 4.454 17 H 0.134 0.866 18 C -0.171 4.171 19 N -0.394 5.394 20 Si 0.758 3.242 21 H -0.196 1.196 22 H -0.200 1.200 23 H -0.188 1.188 24 C -0.234 4.234 25 H 0.087 0.913 26 H 0.103 0.897 27 H 0.107 0.893 28 H 0.207 0.793 29 H 0.216 0.784 30 H 0.247 0.753 31 H 0.207 0.793 32 H 0.086 0.914 33 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -11.209 7.292 -0.087 13.373 hybrid contribution 1.136 1.360 0.029 1.772 sum -10.073 8.652 -0.058 13.279 Atomic orbital electron populations 1.21743 0.73640 1.04174 1.03021 1.48109 1.06052 1.00512 1.63280 1.76904 1.01813 1.07076 1.22821 1.23534 0.95170 0.92972 0.97139 1.19441 0.95049 0.94948 1.26669 1.18860 0.87642 0.88501 0.92364 1.67545 1.37359 0.99040 1.28988 1.24663 0.81753 0.99195 0.84856 1.68233 1.21086 1.14530 1.28349 1.17886 0.83784 0.87887 0.84976 1.41118 1.00777 1.08183 1.69025 1.17308 0.85897 0.89254 1.24957 1.24499 0.98171 0.90769 1.06365 1.78291 0.94109 1.11077 1.25785 1.44591 1.05447 1.01974 1.38717 1.19889 0.77492 0.94769 1.53254 0.86605 1.25640 1.01060 0.94953 0.95438 1.70211 1.35320 0.98868 1.34954 0.85825 0.80546 0.78776 0.79009 1.19561 1.20038 1.18803 1.21229 0.90859 0.91363 1.19985 0.91306 0.89668 0.89268 0.79285 0.78448 0.75321 0.79290 0.91390 0.83706 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 1.10 11.47 59.84 0.69 1.79 16 2 N -0.39 -5.45 4.05 -67.25 -0.27 -5.73 16 3 N -0.27 -3.79 12.45 30.80 0.38 -3.41 16 4 C 0.11 1.40 11.87 -17.11 -0.20 1.20 16 5 C -0.34 -5.37 6.15 -106.81 -0.66 -6.03 16 6 C 0.37 5.94 8.04 -156.22 -1.26 4.68 16 7 N -0.60 -9.45 10.47 -13.96 -0.15 -9.59 16 8 C 0.39 5.95 12.24 -92.12 -1.13 4.82 16 9 N -0.59 -10.61 6.64 -13.61 -0.09 -10.70 16 10 C 0.51 8.81 7.52 -154.81 -1.16 7.64 16 11 N -0.57 -9.85 5.59 -9.81 -0.05 -9.90 16 12 C -0.07 -1.47 6.92 -83.86 -0.58 -2.05 16 13 C -0.02 -0.52 10.86 -17.03 -0.18 -0.70 16 14 N -0.26 -7.26 10.40 30.80 0.32 -6.94 16 15 N -0.14 -3.72 3.74 -11.40 -0.04 -3.77 16 16 C -0.32 -8.25 10.25 -14.82 -0.15 -8.40 16 17 H 0.12 2.65 7.83 -52.49 -0.41 2.24 16 18 C 0.05 1.17 5.50 -17.50 -0.10 1.07 16 19 N -0.77 -20.75 11.81 55.49 0.66 -20.10 16 20 Si 0.93 18.41 29.55 -169.99 -5.02 13.39 16 21 H -0.27 -5.26 7.11 56.52 0.40 -4.86 16 22 H -0.28 -5.39 7.11 56.52 0.40 -4.99 16 23 H -0.26 -4.99 7.11 56.52 0.40 -4.58 16 24 C -0.08 -1.86 11.50 -16.37 -0.19 -2.04 16 25 H 0.07 0.57 8.14 -51.92 -0.42 0.15 16 26 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 27 H 0.09 0.79 8.14 -51.93 -0.42 0.36 16 28 H 0.19 1.67 8.06 -52.49 -0.42 1.25 16 29 H 0.20 2.28 8.06 -52.49 -0.42 1.86 16 30 H 0.41 5.49 8.69 -40.82 -0.35 5.14 16 31 H 0.19 4.32 5.62 -52.49 -0.30 4.02 16 32 H 0.28 6.81 8.31 -40.82 -0.34 6.48 16 33 H 0.15 2.71 8.06 -52.49 -0.42 2.29 16 LS Contribution 297.37 15.07 4.48 4.48 Total: -1.00 -33.26 297.37 -7.44 -40.70 By element: Atomic # 1 Polarization: 12.32 SS G_CDS: -2.73 Total: 9.59 kcal Atomic # 6 Polarization: 6.90 SS G_CDS: -4.92 Total: 1.98 kcal Atomic # 7 Polarization: -70.89 SS G_CDS: 0.75 Total: -70.14 kcal Atomic # 14 Polarization: 18.41 SS G_CDS: -5.02 Total: 13.39 kcal Total LS contribution 4.48 Total: 4.48 kcal Total: -33.26 -7.44 -40.70 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000142793805.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 257.356 kcal (2) G-P(sol) polarization free energy of solvation -33.257 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 224.099 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.444 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.701 kcal (6) G-S(sol) free energy of system = (1) + (5) 216.655 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds