Wall clock time and date at job start Wed Apr 15 2020 11:47:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 N 1.40062 * 125.87797 * 2 1 4 4 C 1.30265 * 109.69533 * 180.02562 * 3 2 1 5 5 C 1.41146 * 108.47041 * 359.97438 * 4 3 2 6 6 C 1.36316 * 125.87475 * 180.02562 * 2 1 3 7 7 N 1.33203 * 134.61252 * 359.97438 * 6 2 1 8 8 C 1.31523 * 120.69248 * 179.97438 * 7 6 2 9 9 N 1.32109 * 122.65196 * 359.75206 * 8 7 6 10 10 C 1.32906 * 121.18598 * 0.51816 * 9 8 7 11 11 N 1.38091 * 120.81411 * 179.75120 * 10 9 8 12 12 C 1.40533 * 119.99822 * 359.72675 * 11 10 9 13 13 C 1.40666 * 126.08462 * 359.97340 * 12 11 10 14 14 N 1.30913 * 108.39026 * 180.02562 * 13 12 11 15 15 N 1.40065 * 108.41121 * 0.02562 * 14 13 12 16 16 C 1.37315 * 126.07134 * 179.97438 * 15 14 13 17 17 H 1.08000 * 119.99648 * 180.02562 * 16 15 14 18 18 C 1.38972 * 119.99885 * 0.02805 * 16 15 14 19 19 N 1.31305 * 120.00193 * 359.97438 * 18 16 15 20 20 Si 1.86800 * 119.99875 * 179.97438 * 18 16 15 21 21 H 1.48498 * 109.47155 * 90.00174 * 20 18 16 22 22 H 1.48505 * 109.46899 * 209.99762 * 20 18 16 23 23 H 1.48499 * 109.47123 * 329.99585 * 20 18 16 24 24 C 1.35691 * 126.07881 * 180.26602 * 12 11 10 25 25 H 1.09008 * 109.47131 * 269.96567 * 1 2 3 26 26 H 1.09003 * 109.47228 * 29.96131 * 1 2 3 27 27 H 1.08990 * 109.47263 * 149.96446 * 1 2 3 28 28 H 1.07990 * 125.76673 * 180.02562 * 4 3 2 29 29 H 1.07997 * 118.67199 * 179.97438 * 8 7 6 30 30 H 0.96998 * 119.99968 * 179.72627 * 11 10 9 31 31 H 1.07998 * 125.80585 * 0.02562 * 13 12 11 32 32 H 0.96998 * 120.00213 * 179.97438 * 19 18 16 33 33 H 1.07998 * 126.25124 * 359.97438 * 24 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 7 2.2858 1.1349 0.0000 4 6 3.5368 0.7718 -0.0005 5 6 3.5932 -0.6385 -0.0003 6 6 2.2638 -1.1046 -0.0005 7 7 2.0436 -2.4183 -0.0007 8 6 3.0481 -3.2673 -0.0017 9 7 4.3105 -2.8779 -0.0074 10 6 4.6331 -1.5886 -0.0022 11 7 5.9552 -1.1902 -0.0031 12 6 6.9791 -2.1527 -0.0038 13 6 6.8041 -3.5485 -0.0031 14 7 7.9853 -4.1129 -0.0035 15 7 8.9574 -3.1044 -0.0039 16 6 10.3176 -3.2926 -0.0039 17 1 10.9807 -2.4401 -0.0037 18 6 10.8409 -4.5801 -0.0040 19 7 10.0348 -5.6165 -0.0037 20 14 12.6913 -4.8361 -0.0047 21 1 13.1822 -4.9040 1.3951 22 1 13.0151 -6.1051 -0.7049 23 1 13.3475 -3.7029 -0.7051 24 6 8.3125 -1.9011 0.0004 25 1 -0.3634 -0.0006 1.0277 26 1 -0.3634 0.8903 -0.5132 27 1 -0.3633 -0.8896 -0.5143 28 1 4.3872 1.4374 -0.0003 29 1 2.8322 -4.3255 -0.0014 30 1 6.1772 -0.2459 -0.0033 31 1 5.8564 -4.0664 -0.0024 32 1 10.4000 -6.5151 -0.0042 33 1 8.7785 -0.9268 0.0045 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000142793805.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:47:11 Heat of formation + Delta-G solvation = 196.144826 kcal Electronic energy + Delta-G solvation = -21058.427749 eV Core-core repulsion = 17736.756860 eV Total energy + Delta-G solvation = -3321.670888 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 285.103 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -42.91351 -41.40766 -39.82844 -37.37811 -35.28553 -34.28609 -33.11271 -32.19378 -31.25426 -29.17899 -27.91562 -26.62864 -25.31880 -24.04132 -22.66128 -21.85579 -21.24166 -19.72203 -19.22197 -18.36670 -17.46832 -17.34421 -17.02129 -16.78046 -15.90629 -15.57015 -15.36518 -15.15890 -15.10325 -14.93181 -14.54953 -13.50791 -13.48454 -13.39275 -13.29986 -13.13877 -12.80431 -12.76624 -12.36824 -12.07050 -11.52718 -11.47725 -10.98496 -10.73118 -10.13246 -9.97935 -9.96903 -9.60641 -8.42487 -8.23602 -6.16446 -0.19964 0.44819 1.19359 1.34479 1.42431 1.47085 1.59086 1.83318 1.98439 2.23596 2.50119 2.93186 3.01567 3.14176 3.19788 3.29691 3.61610 3.82623 3.97676 4.37904 4.42503 4.48510 4.52741 4.67456 4.68244 4.99629 5.08045 5.18108 5.36150 5.37113 5.66697 5.91328 6.01096 6.19335 6.40303 6.48442 6.71319 6.88706 7.44063 7.52275 7.76862 8.56546 Molecular weight = 285.10amu Principal moments of inertia in cm(-1) A = 0.048810 B = 0.003423 C = 0.003204 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 573.512611 B = 8178.361708 C = 8736.728390 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.106 3.894 2 N -0.390 5.390 3 N -0.277 5.277 4 C 0.115 3.885 5 C -0.348 4.348 6 C 0.349 3.651 7 N -0.597 5.597 8 C 0.383 3.617 9 N -0.622 5.622 10 C 0.503 3.497 11 N -0.574 5.574 12 C -0.048 4.048 13 C -0.041 4.041 14 N -0.312 5.312 15 N -0.172 5.172 16 C -0.354 4.354 17 H 0.137 0.863 18 C -0.004 4.004 19 N -0.822 5.822 20 Si 1.015 2.985 21 H -0.266 1.266 22 H -0.277 1.277 23 H -0.247 1.247 24 C -0.080 4.080 25 H 0.082 0.918 26 H 0.105 0.895 27 H 0.094 0.906 28 H 0.231 0.769 29 H 0.229 0.771 30 H 0.429 0.571 31 H 0.197 0.803 32 H 0.275 0.725 33 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.213 10.921 -0.088 15.653 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.033 4.033 2 N -0.180 5.180 3 N -0.092 5.092 4 C -0.081 4.081 5 C -0.366 4.366 6 C 0.102 3.898 7 N -0.327 5.327 8 C 0.091 3.909 9 N -0.352 5.352 10 C 0.250 3.750 11 N -0.195 5.195 12 C -0.155 4.155 13 C -0.218 4.218 14 N -0.143 5.143 15 N 0.060 4.940 16 C -0.485 4.485 17 H 0.154 0.846 18 C -0.216 4.216 19 N -0.450 5.450 20 Si 0.834 3.166 21 H -0.191 1.191 22 H -0.202 1.202 23 H -0.170 1.170 24 C -0.232 4.232 25 H 0.100 0.900 26 H 0.124 0.876 27 H 0.113 0.887 28 H 0.247 0.753 29 H 0.245 0.755 30 H 0.269 0.731 31 H 0.213 0.787 32 H 0.085 0.915 33 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges -11.691 9.620 -0.102 15.140 hybrid contribution 0.896 0.818 0.038 1.214 sum -10.795 10.438 -0.064 15.016 Atomic orbital electron populations 1.22071 0.71410 1.05504 1.04334 1.48517 1.07382 0.99823 1.62315 1.76904 1.02253 1.07259 1.22758 1.24164 0.96001 0.92243 0.95658 1.19586 0.94378 0.96086 1.26511 1.19212 0.88546 0.88991 0.93019 1.67614 1.37355 0.99280 1.28408 1.25260 0.80988 1.00504 0.84172 1.68179 1.22513 1.15352 1.29156 1.18088 0.84055 0.88263 0.84562 1.40909 0.99801 1.08242 1.70505 1.17308 0.86760 0.89147 1.22305 1.24764 0.97703 0.92390 1.06925 1.78173 0.95488 1.13275 1.27325 1.44820 1.05729 1.02690 1.40792 1.20523 0.77906 0.95976 1.54132 0.84608 1.26773 1.06205 0.94310 0.94321 1.70382 1.37749 0.99364 1.37487 0.84648 0.73972 0.78831 0.79116 1.19054 1.20237 1.17016 1.21930 0.91231 0.91937 1.18053 0.89972 0.87643 0.88712 0.75330 0.75543 0.73137 0.78686 0.91481 0.80005 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 1.77 11.47 127.77 1.47 3.23 16 2 N -0.39 -10.01 4.05 -366.68 -1.48 -11.50 16 3 N -0.28 -6.95 12.45 -56.47 -0.70 -7.65 16 4 C 0.11 2.63 11.87 85.64 1.02 3.65 16 5 C -0.35 -10.18 6.15 -21.28 -0.13 -10.31 16 6 C 0.35 10.51 8.04 134.14 1.08 11.59 16 7 N -0.60 -18.02 10.47 -198.10 -2.07 -20.10 16 8 C 0.38 11.41 12.24 180.87 2.21 13.62 16 9 N -0.62 -21.98 6.64 -196.96 -1.31 -23.29 16 10 C 0.50 16.78 7.52 133.64 1.01 17.79 16 11 N -0.57 -18.71 5.59 -184.94 -1.03 -19.74 16 12 C -0.05 -2.08 6.92 37.75 0.26 -1.81 16 13 C -0.04 -2.03 10.86 85.42 0.93 -1.10 16 14 N -0.31 -17.86 10.40 -56.45 -0.59 -18.44 16 15 N -0.17 -9.24 3.74 -190.00 -0.71 -9.95 16 16 C -0.35 -18.39 10.25 84.01 0.86 -17.52 16 17 H 0.14 6.15 7.83 -2.91 -0.02 6.13 16 18 C 0.00 -0.22 5.50 84.95 0.47 0.24 16 19 N -0.82 -46.28 11.81 21.66 0.26 -46.02 16 20 Si 1.01 38.03 29.55 68.60 2.03 40.06 16 21 H -0.27 -9.63 7.11 99.48 0.71 -8.92 16 22 H -0.28 -10.31 7.11 99.48 0.71 -9.60 16 23 H -0.25 -8.45 7.11 99.48 0.71 -7.74 16 24 C -0.08 -3.55 11.50 83.37 0.96 -2.60 16 25 H 0.08 1.16 8.14 -2.38 -0.02 1.14 16 26 H 0.11 1.32 8.14 -2.39 -0.02 1.30 16 27 H 0.09 1.47 8.14 -2.39 -0.02 1.45 16 28 H 0.23 3.06 8.06 -2.92 -0.02 3.04 16 29 H 0.23 5.01 8.06 -2.91 -0.02 4.99 16 30 H 0.43 10.33 8.69 -92.71 -0.81 9.52 16 31 H 0.20 9.17 5.62 -2.91 -0.02 9.16 16 32 H 0.28 14.28 8.31 -92.71 -0.77 13.51 16 33 H 0.18 6.37 8.06 -2.91 -0.02 6.35 16 Total: -1.00 -74.42 297.37 4.89 -69.54 By element: Atomic # 1 Polarization: 29.94 SS G_CDS: 0.38 Total: 30.32 kcal Atomic # 6 Polarization: 6.65 SS G_CDS: 10.12 Total: 16.77 kcal Atomic # 7 Polarization: -149.04 SS G_CDS: -7.64 Total: -156.69 kcal Atomic # 14 Polarization: 38.03 SS G_CDS: 2.03 Total: 40.06 kcal Total: -74.42 4.89 -69.54 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000142793805.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 265.684 kcal (2) G-P(sol) polarization free energy of solvation -74.425 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 191.259 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.886 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.539 kcal (6) G-S(sol) free energy of system = (1) + (5) 196.145 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds