Wall clock time and date at job start Wed Apr 15 2020 11:47:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34229 * 117.00186 * 2 1 4 4 O 1.20828 * 119.99365 * 0.02562 * 3 2 1 5 5 C 1.50689 * 120.00380 * 179.97438 * 3 2 1 6 6 N 1.46504 * 109.47332 * 184.46359 * 5 3 2 7 7 C 1.36942 * 119.99720 * 266.29356 * 6 5 3 8 8 H 1.07998 * 120.00167 * 21.10858 * 7 6 5 9 9 C 1.38813 * 119.99405 * 201.10720 * 7 6 5 10 10 N 1.31613 * 120.00410 * 22.02015 * 9 7 6 11 11 Si 1.86798 * 119.99544 * 202.01615 * 9 7 6 12 12 H 1.48501 * 109.47087 * 60.00175 * 11 9 7 13 13 H 1.48502 * 109.47010 * 180.02562 * 11 9 7 14 14 H 1.48505 * 109.47520 * 300.00254 * 11 9 7 15 15 C 1.46501 * 120.00142 * 86.29161 * 6 5 3 16 16 C 1.50697 * 109.47077 * 84.49705 * 15 6 5 17 17 O 1.21235 * 120.00264 * 355.24441 * 16 15 6 18 18 N 1.34775 * 119.99710 * 175.24752 * 16 15 6 19 19 C 1.47054 * 125.40605 * 179.97438 * 18 16 15 20 20 C 1.54106 * 103.98850 * 179.97438 * 19 18 16 21 21 N 1.47383 * 103.70216 * 0.11511 * 20 19 18 22 22 C 1.33943 * 109.21523 * 359.88049 * 21 20 19 23 23 O 1.21532 * 123.04740 * 180.10340 * 22 21 20 24 24 H 1.09004 * 109.46867 * 179.97438 * 1 2 3 25 25 H 1.08998 * 109.47297 * 299.99792 * 1 2 3 26 26 H 1.09003 * 109.47360 * 60.00114 * 1 2 3 27 27 H 1.08996 * 109.47449 * 64.46388 * 5 3 2 28 28 H 1.09001 * 109.47488 * 304.46132 * 5 3 2 29 29 H 0.96996 * 120.00418 * 179.97438 * 10 9 7 30 30 H 1.08995 * 109.46712 * 324.49573 * 15 6 5 31 31 H 1.08991 * 109.46937 * 204.49862 * 15 6 5 32 32 H 1.08998 * 110.55348 * 298.59181 * 19 18 16 33 33 H 1.08999 * 110.54895 * 61.26321 * 19 18 16 34 34 H 1.09008 * 110.54823 * 118.66782 * 20 19 18 35 35 H 1.08998 * 110.54984 * 241.47728 * 20 19 18 36 36 H 0.97008 * 125.37717 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5662 1.2749 0.0006 6 7 3.9818 2.6756 0.1080 7 6 4.2452 3.4003 -1.0237 8 1 3.8377 3.0860 -1.9733 9 6 5.0359 4.5389 -0.9504 10 7 5.8718 4.6961 0.0540 11 14 4.9135 5.8480 -2.2773 12 1 3.5266 6.3767 -2.3246 13 1 5.8553 6.9542 -1.9696 14 1 5.2617 5.2535 -3.5929 15 6 4.1156 3.3011 1.4260 16 6 5.4776 2.9929 1.9923 17 8 6.2268 2.2475 1.3981 18 7 5.8629 3.5458 3.1595 19 6 7.1594 3.3279 3.8185 20 6 7.0754 4.1834 5.0976 21 7 5.7350 4.7915 5.0236 22 6 5.1254 4.3800 3.9041 23 8 4.0049 4.7321 3.5918 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 3.9527 0.8514 -0.9264 28 1 3.9593 0.7134 0.8482 29 1 6.4245 5.4915 0.1051 30 1 3.3476 2.9100 2.0933 31 1 3.9979 4.3803 1.3296 32 1 7.2883 2.2754 4.0708 33 1 7.9748 3.6702 3.1813 34 1 7.1631 3.5554 5.9843 35 1 7.8475 4.9528 5.0947 36 1 5.3551 5.3953 5.6810 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000362230845.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:47:20 Heat of formation + Delta-G solvation = -119.156361 kcal Electronic energy + Delta-G solvation = -23761.882210 eV Core-core repulsion = 20054.644414 eV Total energy + Delta-G solvation = -3707.237796 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 285.120 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -42.55654 -41.23851 -39.57471 -37.81884 -37.39818 -36.59931 -34.53209 -33.49300 -30.58748 -29.86827 -28.73837 -27.68154 -25.23303 -23.92786 -23.59379 -21.72251 -20.38537 -18.98581 -18.74091 -18.48205 -17.91013 -17.65718 -17.28504 -17.19501 -16.74025 -16.17547 -15.69469 -15.43372 -15.14657 -14.89028 -14.81585 -14.68628 -14.24181 -14.21868 -13.40372 -13.16944 -13.16016 -12.89938 -12.83512 -12.64285 -12.42404 -12.21551 -12.02116 -11.67485 -11.61834 -11.35212 -10.99820 -10.62674 -10.53769 -9.89398 -9.05756 -8.02847 -5.39551 1.34696 1.38602 1.41907 1.47008 1.51008 1.54701 1.92082 2.42449 2.53082 2.92565 3.22276 3.39026 3.53442 3.94777 4.14917 4.18822 4.34016 4.34688 4.38942 4.44067 4.58444 4.67086 4.71684 4.80167 4.83388 4.94606 5.09950 5.49295 5.55047 5.80385 6.07108 6.14870 6.25657 6.87853 7.01064 7.32571 7.44437 7.64996 8.04739 9.05746 Molecular weight = 285.12amu Principal moments of inertia in cm(-1) A = 0.012743 B = 0.007411 C = 0.005421 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2196.746699 B = 3777.411659 C = 5163.397982 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.369 6.369 3 C 0.430 3.570 4 O -0.533 6.533 5 C 0.156 3.844 6 N -0.563 5.563 7 C -0.275 4.275 8 H 0.073 0.927 9 C -0.036 4.036 10 N -0.910 5.910 11 Si 0.970 3.030 12 H -0.288 1.288 13 H -0.290 1.290 14 H -0.271 1.271 15 C 0.190 3.810 16 C 0.565 3.435 17 O -0.521 6.521 18 N -0.588 5.588 19 C 0.071 3.929 20 C 0.105 3.895 21 N -0.718 5.718 22 C 0.690 3.310 23 O -0.604 6.604 24 H 0.136 0.864 25 H 0.053 0.947 26 H 0.053 0.947 27 H 0.112 0.888 28 H 0.097 0.903 29 H 0.250 0.750 30 H 0.048 0.952 31 H 0.075 0.925 32 H 0.103 0.897 33 H 0.082 0.918 34 H 0.127 0.873 35 H 0.112 0.888 36 H 0.442 0.558 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.474 -5.548 11.788 13.111 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.285 6.285 3 C 0.271 3.729 4 O -0.421 6.421 5 C 0.026 3.974 6 N -0.281 5.281 7 C -0.404 4.404 8 H 0.091 0.909 9 C -0.233 4.233 10 N -0.554 5.554 11 Si 0.798 3.202 12 H -0.215 1.215 13 H -0.215 1.215 14 H -0.196 1.196 15 C 0.060 3.940 16 C 0.355 3.645 17 O -0.393 6.393 18 N -0.336 5.336 19 C -0.051 4.051 20 C -0.018 4.018 21 N -0.382 5.382 22 C 0.390 3.610 23 O -0.483 6.483 24 H 0.154 0.846 25 H 0.072 0.928 26 H 0.072 0.928 27 H 0.129 0.871 28 H 0.114 0.886 29 H 0.059 0.941 30 H 0.066 0.934 31 H 0.093 0.907 32 H 0.121 0.879 33 H 0.100 0.900 34 H 0.145 0.855 35 H 0.130 0.870 36 H 0.286 0.714 Dipole moment (debyes) X Y Z Total from point charges 1.186 -5.452 11.121 12.443 hybrid contribution -0.357 1.369 -0.536 1.513 sum 0.829 -4.083 10.586 11.376 Atomic orbital electron populations 1.23450 0.76017 1.05338 1.01794 1.86545 1.24296 1.33424 1.84196 1.26357 0.94481 0.81001 0.71090 1.90599 1.67648 1.37867 1.46030 1.20529 0.84998 0.86986 1.04866 1.43637 1.74532 1.07598 1.02348 1.19338 1.25652 1.07008 0.88364 0.90873 1.25554 0.95617 1.01640 1.00486 1.69912 1.23511 1.27479 1.34507 0.85315 0.76844 0.78847 0.79239 1.21497 1.21549 1.19639 1.20241 0.89840 0.99031 0.84908 1.21794 0.90616 0.76129 0.75982 1.90488 1.55241 1.37009 1.56527 1.46473 1.19008 1.45651 1.22436 1.22815 0.85214 1.03072 0.93992 1.22756 0.84140 0.97507 0.97413 1.45192 1.18484 1.51593 1.22928 1.16280 0.83957 0.79076 0.81686 1.90959 1.19942 1.62600 1.74782 0.84627 0.92815 0.92820 0.87069 0.88555 0.94064 0.93388 0.90653 0.87876 0.89994 0.85509 0.86992 0.71379 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.72 10.56 113.37 1.20 1.92 16 2 O -0.37 -12.61 10.57 -51.41 -0.54 -13.16 16 3 C 0.43 18.23 8.02 71.23 0.57 18.80 16 4 O -0.53 -26.63 16.18 21.96 0.36 -26.27 16 5 C 0.16 6.83 6.17 85.63 0.53 7.36 16 6 N -0.56 -30.15 1.53 -710.72 -1.09 -31.24 16 7 C -0.27 -15.81 9.59 84.03 0.81 -15.01 16 8 H 0.07 4.13 7.92 -2.91 -0.02 4.11 16 9 C -0.04 -2.09 4.81 84.86 0.41 -1.68 16 10 N -0.91 -53.33 9.37 21.65 0.20 -53.13 16 11 Si 0.97 47.12 29.61 68.60 2.03 49.15 16 12 H -0.29 -14.20 7.11 99.48 0.71 -13.49 16 13 H -0.29 -13.87 7.11 99.48 0.71 -13.16 16 14 H -0.27 -12.57 7.11 99.48 0.71 -11.87 16 15 C 0.19 10.12 3.70 85.63 0.32 10.43 16 16 C 0.56 27.72 5.76 87.66 0.51 28.23 16 17 O -0.52 -27.67 16.29 -2.89 -0.05 -27.72 16 18 N -0.59 -23.16 3.00 -771.19 -2.32 -25.48 16 19 C 0.07 1.86 7.20 86.65 0.62 2.49 16 20 C 0.11 1.64 8.08 86.58 0.70 2.34 16 21 N -0.72 -16.89 6.38 -476.66 -3.04 -19.94 16 22 C 0.69 26.02 8.51 179.57 1.53 27.55 16 23 O -0.60 -28.37 15.00 -3.82 -0.06 -28.43 16 24 H 0.14 2.32 8.14 -2.39 -0.02 2.30 16 25 H 0.05 1.44 8.13 -2.39 -0.02 1.42 16 26 H 0.05 1.45 8.13 -2.39 -0.02 1.43 16 27 H 0.11 4.55 8.01 -2.39 -0.02 4.54 16 28 H 0.10 3.86 8.10 -2.39 -0.02 3.85 16 29 H 0.25 14.40 8.31 -92.71 -0.77 13.62 16 30 H 0.05 2.51 7.79 -2.39 -0.02 2.49 16 31 H 0.08 4.59 5.90 -2.39 -0.01 4.58 16 32 H 0.10 2.33 8.14 -2.39 -0.02 2.31 16 33 H 0.08 2.30 8.14 -2.39 -0.02 2.28 16 34 H 0.13 1.00 8.14 -2.38 -0.02 0.98 16 35 H 0.11 1.22 8.14 -2.39 -0.02 1.20 16 36 H 0.44 7.89 8.96 -92.70 -0.83 7.06 16 Total: -1.00 -83.10 313.63 2.97 -80.13 By element: Atomic # 1 Polarization: 13.36 SS G_CDS: 0.29 Total: 13.65 kcal Atomic # 6 Polarization: 75.24 SS G_CDS: 7.18 Total: 82.43 kcal Atomic # 7 Polarization: -123.54 SS G_CDS: -6.25 Total: -129.78 kcal Atomic # 8 Polarization: -95.28 SS G_CDS: -0.29 Total: -95.57 kcal Atomic # 14 Polarization: 47.12 SS G_CDS: 2.03 Total: 49.15 kcal Total: -83.10 2.97 -80.13 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000362230845.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.026 kcal (2) G-P(sol) polarization free energy of solvation -83.096 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.123 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.966 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.130 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.156 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds