Wall clock time and date at job start Wed Apr 15 2020 11:47:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42902 * 113.99830 * 2 1 4 4 C 1.52999 * 109.46916 * 180.02562 * 3 2 1 5 5 N 1.46496 * 109.47437 * 65.00459 * 4 3 2 6 6 C 1.37096 * 120.00665 * 89.99528 * 5 4 3 7 7 H 1.07998 * 120.00484 * 218.51296 * 6 5 4 8 8 C 1.38949 * 119.99492 * 38.77863 * 6 5 4 9 9 N 1.31410 * 120.00317 * 18.91922 * 8 6 5 10 10 Si 1.86798 * 119.99939 * 198.91259 * 8 6 5 11 11 H 1.48502 * 109.46806 * 90.00460 * 10 8 6 12 12 H 1.48505 * 109.47204 * 210.00232 * 10 8 6 13 13 H 1.48497 * 109.47440 * 330.00652 * 10 8 6 14 14 C 1.34780 * 119.99622 * 269.99882 * 5 4 3 15 15 O 1.21290 * 119.99973 * 4.48601 * 14 5 4 16 16 C 1.50699 * 119.99804 * 184.48414 * 14 5 4 17 17 H 1.09000 * 109.46517 * 33.64813 * 16 14 5 18 18 C 1.53036 * 109.46268 * 273.67506 * 16 14 5 19 19 C 1.50805 * 109.18834 * 286.68158 * 18 16 14 20 20 O 1.21230 * 120.02147 * 145.74747 * 19 18 16 21 21 N 1.34563 * 119.96640 * 325.76978 * 19 18 16 22 22 C 1.34342 * 120.98727 * 4.43300 * 21 19 18 23 23 O 1.21534 * 119.21242 * 192.04404 * 22 21 19 24 24 N 1.34298 * 121.57806 * 12.01728 * 22 21 19 25 25 H 1.08999 * 109.47080 * 299.99678 * 1 2 3 26 26 H 1.09004 * 109.46998 * 59.99662 * 1 2 3 27 27 H 1.08994 * 109.46759 * 179.97438 * 1 2 3 28 28 H 1.08999 * 109.47193 * 59.99785 * 3 2 1 29 29 H 1.09000 * 109.47323 * 300.00110 * 3 2 1 30 30 H 1.08995 * 109.47250 * 304.99860 * 4 3 2 31 31 H 1.09007 * 109.46759 * 185.00251 * 4 3 2 32 32 H 0.96996 * 120.00696 * 184.98275 * 9 8 6 33 33 H 1.09000 * 109.52040 * 46.59655 * 18 16 14 34 34 H 1.09003 * 109.52149 * 166.77352 * 18 16 14 35 35 H 0.96996 * 119.50826 * 184.45582 * 21 19 18 36 36 H 0.97004 * 119.53129 * 185.66910 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 7 3.9757 0.5646 -1.2527 6 6 4.2664 1.3471 -2.3402 7 1 3.9914 1.0180 -3.3314 8 6 4.9199 2.5611 -2.1677 9 7 5.5831 2.7986 -1.0583 10 14 4.8559 3.8557 -3.5128 11 1 3.6827 4.7394 -3.2937 12 1 6.0995 4.6666 -3.4790 13 1 4.7345 3.1904 -4.8348 14 6 4.0949 -0.7754 -1.3356 15 8 3.7605 -1.4729 -0.4013 16 6 4.6437 -1.4070 -2.5890 17 1 5.3952 -0.7504 -3.0275 18 6 3.5073 -1.6219 -3.5912 19 6 2.6460 -2.7689 -3.1255 20 8 1.4512 -2.7522 -3.3300 21 7 3.2043 -3.8107 -2.4824 22 6 4.5101 -3.8096 -2.1669 23 8 5.0302 -4.8413 -1.7900 24 7 5.2548 -2.6957 -2.2585 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3632 -1.0276 -0.0005 28 1 1.6886 1.8464 0.8899 29 1 1.6886 1.8464 -0.8900 30 1 3.8514 0.5683 0.8409 31 1 3.9785 2.1766 0.0890 32 1 5.9782 3.6713 -0.9067 33 1 2.9038 -0.7167 -3.6573 34 1 3.9249 -1.8546 -4.5709 35 1 2.6558 -4.5741 -2.2433 36 1 6.2110 -2.7457 -2.1032 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597754579.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:47:25 Heat of formation + Delta-G solvation = -131.654413 kcal Electronic energy + Delta-G solvation = -24265.978164 eV Core-core repulsion = 20558.198413 eV Total energy + Delta-G solvation = -3707.779752 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 285.120 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.31328 -38.72415 -38.41071 -37.01764 -35.39616 -34.72388 -33.80708 -31.79827 -30.71481 -29.12073 -25.90566 -25.39446 -24.67232 -23.08769 -21.95619 -20.10520 -19.14701 -17.99877 -17.59266 -16.60722 -16.49872 -15.86503 -15.55823 -15.42967 -15.36929 -14.58268 -14.57396 -14.35172 -14.24217 -13.98117 -13.32171 -13.21631 -12.73872 -12.18137 -12.06372 -11.87236 -11.54914 -11.40142 -11.13769 -11.04731 -10.60354 -10.47408 -10.38173 -10.25990 -9.92806 -9.84533 -9.59966 -9.21583 -9.00496 -8.26031 -7.68344 -6.55520 -4.33666 2.11000 2.87163 2.99464 3.10471 3.11324 3.43713 3.63964 3.75076 3.93383 4.46606 4.54199 4.74146 4.80807 5.08640 5.36584 5.60970 5.66341 5.75028 5.82897 5.90743 6.02353 6.08799 6.10374 6.27193 6.29723 6.59707 6.74824 7.06483 7.16391 7.21841 7.66163 7.74131 7.84006 7.86744 8.16476 8.56538 8.88148 9.30502 9.77897 10.42803 Molecular weight = 285.12amu Principal moments of inertia in cm(-1) A = 0.015244 B = 0.007474 C = 0.006239 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1836.406787 B = 3745.252729 C = 4486.944340 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.366 6.366 3 C 0.048 3.952 4 C 0.119 3.881 5 N -0.431 5.431 6 C -0.348 4.348 7 H 0.091 0.909 8 C 0.047 3.953 9 N -0.854 5.854 10 Si 0.912 3.088 11 H -0.276 1.276 12 H -0.283 1.283 13 H -0.266 1.266 14 C 0.457 3.543 15 O -0.568 6.568 16 C 0.129 3.871 17 H 0.135 0.865 18 C -0.144 4.144 19 C 0.534 3.466 20 O -0.510 6.510 21 N -0.669 5.669 22 C 0.727 3.273 23 O -0.577 6.577 24 N -0.703 5.703 25 H 0.029 0.971 26 H 0.032 0.968 27 H 0.075 0.925 28 H 0.038 0.962 29 H 0.047 0.953 30 H 0.063 0.937 31 H 0.118 0.882 32 H 0.272 0.728 33 H 0.130 0.870 34 H 0.114 0.886 35 H 0.421 0.579 36 H 0.422 0.578 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.557 -1.044 -4.338 5.143 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.284 6.284 3 C -0.030 4.030 4 C -0.005 4.005 5 N -0.150 5.150 6 C -0.475 4.475 7 H 0.108 0.892 8 C -0.160 4.160 9 N -0.490 5.490 10 Si 0.738 3.262 11 H -0.202 1.202 12 H -0.209 1.209 13 H -0.191 1.191 14 C 0.243 3.757 15 O -0.450 6.450 16 C 0.020 3.980 17 H 0.153 0.847 18 C -0.185 4.185 19 C 0.323 3.677 20 O -0.383 6.383 21 N -0.337 5.337 22 C 0.428 3.572 23 O -0.454 6.454 24 N -0.360 5.360 25 H 0.048 0.952 26 H 0.051 0.949 27 H 0.094 0.906 28 H 0.056 0.944 29 H 0.066 0.934 30 H 0.081 0.919 31 H 0.135 0.865 32 H 0.083 0.917 33 H 0.148 0.852 34 H 0.132 0.868 35 H 0.261 0.739 36 H 0.261 0.739 Dipole moment (debyes) X Y Z Total from point charges -2.866 -1.756 -3.791 5.066 hybrid contribution -0.160 1.015 -0.389 1.099 sum -3.026 -0.740 -4.180 5.213 Atomic orbital electron populations 1.22613 0.83320 1.01711 0.98740 1.88178 1.17506 1.27649 1.95058 1.23096 0.96387 0.84626 0.98872 1.21484 0.89536 1.01817 0.87677 1.43238 1.57017 1.03312 1.11453 1.19478 1.37359 1.02966 0.87723 0.89174 1.25407 0.93166 0.99674 0.97731 1.69918 1.29265 1.23061 1.26723 0.86171 0.77912 0.80851 0.81280 1.20195 1.20864 1.19077 1.20481 0.82556 0.83923 0.88775 1.90625 1.52668 1.62013 1.39664 1.21032 0.97123 0.84917 0.94915 0.84717 1.22153 0.97457 0.98710 1.00192 1.20853 0.88551 0.82727 0.75592 1.90723 1.15131 1.78313 1.54108 1.44043 1.10716 1.22333 1.56581 1.15513 0.80701 0.84109 0.76919 1.90963 1.70662 1.31454 1.52275 1.44829 1.11466 1.05696 1.73997 0.95221 0.94917 0.90619 0.94400 0.93428 0.91881 0.86470 0.91750 0.85193 0.86813 0.73929 0.73917 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.56 11.01 101.05 1.11 1.67 16 2 O -0.37 -7.79 9.31 -47.76 -0.44 -8.23 16 3 C 0.05 0.95 6.28 37.16 0.23 1.18 16 4 C 0.12 2.63 5.44 -4.04 -0.02 2.61 16 5 N -0.43 -9.62 2.50 -114.82 -0.29 -9.90 16 6 C -0.35 -7.50 7.99 -14.93 -0.12 -7.62 16 7 H 0.09 1.79 6.24 -52.49 -0.33 1.46 16 8 C 0.05 1.04 5.01 -17.47 -0.09 0.95 16 9 N -0.85 -19.96 11.39 55.50 0.63 -19.32 16 10 Si 0.91 17.10 29.60 -169.99 -5.03 12.07 16 11 H -0.28 -5.27 7.11 56.52 0.40 -4.87 16 12 H -0.28 -5.44 7.11 56.52 0.40 -5.04 16 13 H -0.27 -4.83 7.11 56.52 0.40 -4.42 16 14 C 0.46 9.98 6.15 -10.98 -0.07 9.91 16 15 O -0.57 -14.14 14.78 -6.98 -0.10 -14.24 16 16 C 0.13 2.19 2.86 -69.11 -0.20 1.99 16 17 H 0.14 2.10 7.20 -51.93 -0.37 1.72 16 18 C -0.14 -2.20 5.43 -27.81 -0.15 -2.35 16 19 C 0.53 9.34 7.44 -11.03 -0.08 9.26 16 20 O -0.51 -10.07 17.93 5.60 0.10 -9.97 16 21 N -0.67 -11.31 5.18 -16.02 -0.08 -11.39 16 22 C 0.73 13.07 7.92 -87.74 -0.70 12.38 16 23 O -0.58 -11.67 17.97 5.34 0.10 -11.58 16 24 N -0.70 -11.48 4.97 -60.11 -0.30 -11.78 16 25 H 0.03 0.43 8.14 -51.93 -0.42 0.01 16 26 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 27 H 0.08 1.21 8.14 -51.93 -0.42 0.79 16 28 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 29 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 30 H 0.06 1.49 7.49 -51.93 -0.39 1.10 16 31 H 0.12 2.67 5.51 -51.92 -0.29 2.39 16 32 H 0.27 6.04 8.32 -40.82 -0.34 5.71 16 33 H 0.13 2.08 6.98 -51.93 -0.36 1.72 16 34 H 0.11 1.30 8.14 -51.93 -0.42 0.87 16 35 H 0.42 6.48 8.86 -40.82 -0.36 6.12 16 36 H 0.42 6.07 8.90 -40.82 -0.36 5.71 16 LS Contribution 308.82 15.07 4.65 4.65 Total: -1.00 -30.64 308.82 -4.98 -35.62 By element: Atomic # 1 Polarization: 18.23 SS G_CDS: -4.14 Total: 14.10 kcal Atomic # 6 Polarization: 30.06 SS G_CDS: -0.08 Total: 29.98 kcal Atomic # 7 Polarization: -52.36 SS G_CDS: -0.04 Total: -52.40 kcal Atomic # 8 Polarization: -43.67 SS G_CDS: -0.35 Total: -44.02 kcal Atomic # 14 Polarization: 17.10 SS G_CDS: -5.03 Total: 12.07 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -30.64 -4.98 -35.62 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597754579.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -96.039 kcal (2) G-P(sol) polarization free energy of solvation -30.639 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.678 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.976 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.615 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.654 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds