Wall clock time and date at job start Wed Apr 15 2020 11:47:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42902 * 113.99830 * 2 1 4 4 C 1.52999 * 109.46916 * 180.02562 * 3 2 1 5 5 N 1.46496 * 109.47437 * 65.00459 * 4 3 2 6 6 C 1.37096 * 120.00665 * 89.99528 * 5 4 3 7 7 H 1.07998 * 120.00484 * 218.51296 * 6 5 4 8 8 C 1.38949 * 119.99492 * 38.77863 * 6 5 4 9 9 N 1.31410 * 120.00317 * 18.91922 * 8 6 5 10 10 Si 1.86798 * 119.99939 * 198.91259 * 8 6 5 11 11 H 1.48502 * 109.46806 * 90.00460 * 10 8 6 12 12 H 1.48505 * 109.47204 * 210.00232 * 10 8 6 13 13 H 1.48497 * 109.47440 * 330.00652 * 10 8 6 14 14 C 1.34780 * 119.99622 * 269.99882 * 5 4 3 15 15 O 1.21290 * 119.99973 * 4.48601 * 14 5 4 16 16 C 1.50699 * 119.99804 * 184.48414 * 14 5 4 17 17 H 1.09000 * 109.46517 * 33.64813 * 16 14 5 18 18 C 1.53036 * 109.46268 * 273.67506 * 16 14 5 19 19 C 1.50805 * 109.18834 * 286.68158 * 18 16 14 20 20 O 1.21230 * 120.02147 * 145.74747 * 19 18 16 21 21 N 1.34563 * 119.96640 * 325.76978 * 19 18 16 22 22 C 1.34342 * 120.98727 * 4.43300 * 21 19 18 23 23 O 1.21534 * 119.21242 * 192.04404 * 22 21 19 24 24 N 1.34298 * 121.57806 * 12.01728 * 22 21 19 25 25 H 1.08999 * 109.47080 * 299.99678 * 1 2 3 26 26 H 1.09004 * 109.46998 * 59.99662 * 1 2 3 27 27 H 1.08994 * 109.46759 * 179.97438 * 1 2 3 28 28 H 1.08999 * 109.47193 * 59.99785 * 3 2 1 29 29 H 1.09000 * 109.47323 * 300.00110 * 3 2 1 30 30 H 1.08995 * 109.47250 * 304.99860 * 4 3 2 31 31 H 1.09007 * 109.46759 * 185.00251 * 4 3 2 32 32 H 0.96996 * 120.00696 * 184.98275 * 9 8 6 33 33 H 1.09000 * 109.52040 * 46.59655 * 18 16 14 34 34 H 1.09003 * 109.52149 * 166.77352 * 18 16 14 35 35 H 0.96996 * 119.50826 * 184.45582 * 21 19 18 36 36 H 0.97004 * 119.53129 * 185.66910 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 7 3.9757 0.5646 -1.2527 6 6 4.2664 1.3471 -2.3402 7 1 3.9914 1.0180 -3.3314 8 6 4.9199 2.5611 -2.1677 9 7 5.5831 2.7986 -1.0583 10 14 4.8559 3.8557 -3.5128 11 1 3.6827 4.7394 -3.2937 12 1 6.0995 4.6666 -3.4790 13 1 4.7345 3.1904 -4.8348 14 6 4.0949 -0.7754 -1.3356 15 8 3.7605 -1.4729 -0.4013 16 6 4.6437 -1.4070 -2.5890 17 1 5.3952 -0.7504 -3.0275 18 6 3.5073 -1.6219 -3.5912 19 6 2.6460 -2.7689 -3.1255 20 8 1.4512 -2.7522 -3.3300 21 7 3.2043 -3.8107 -2.4824 22 6 4.5101 -3.8096 -2.1669 23 8 5.0302 -4.8413 -1.7900 24 7 5.2548 -2.6957 -2.2585 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3632 -1.0276 -0.0005 28 1 1.6886 1.8464 0.8899 29 1 1.6886 1.8464 -0.8900 30 1 3.8514 0.5683 0.8409 31 1 3.9785 2.1766 0.0890 32 1 5.9782 3.6713 -0.9067 33 1 2.9038 -0.7167 -3.6573 34 1 3.9249 -1.8546 -4.5709 35 1 2.6558 -4.5741 -2.2433 36 1 6.2110 -2.7457 -2.1032 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597754579.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:47:24 Heat of formation + Delta-G solvation = -155.782734 kcal Electronic energy + Delta-G solvation = -24267.024447 eV Core-core repulsion = 20558.198413 eV Total energy + Delta-G solvation = -3708.826034 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 285.120 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -42.72636 -40.36971 -39.86020 -38.57023 -36.92535 -36.39557 -35.21534 -33.49382 -32.12287 -30.66529 -27.31083 -26.99869 -26.18811 -24.49143 -23.54976 -21.61078 -20.68477 -19.52448 -19.00843 -18.10620 -18.00121 -17.41393 -17.04316 -16.94048 -16.89023 -16.14265 -16.08539 -15.88352 -15.68257 -15.40416 -14.85638 -14.76551 -14.23010 -13.63581 -13.48544 -13.37278 -13.06359 -12.93954 -12.63290 -12.62159 -12.18340 -11.96696 -11.91624 -11.79601 -11.36497 -11.28576 -11.16375 -10.83470 -10.51387 -9.86572 -9.41030 -8.22264 -6.05128 0.71222 1.46078 1.56078 1.60532 1.68027 2.02836 2.11502 2.33557 2.39439 2.94074 3.01795 3.20881 3.41724 3.69749 4.08576 4.28800 4.32319 4.38931 4.48317 4.53759 4.55979 4.58317 4.68295 4.77400 4.93383 5.03320 5.27641 5.31485 5.55467 5.86496 6.06937 6.27856 6.38270 6.46812 6.49709 7.17598 7.20768 7.62090 8.10772 8.77439 Molecular weight = 285.12amu Principal moments of inertia in cm(-1) A = 0.015244 B = 0.007474 C = 0.006239 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1836.406787 B = 3745.252729 C = 4486.944340 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.399 6.399 3 C 0.056 3.944 4 C 0.118 3.882 5 N -0.438 5.438 6 C -0.353 4.353 7 H 0.112 0.888 8 C 0.012 3.988 9 N -0.888 5.888 10 Si 0.973 3.027 11 H -0.281 1.281 12 H -0.292 1.292 13 H -0.248 1.248 14 C 0.443 3.557 15 O -0.607 6.607 16 C 0.139 3.861 17 H 0.157 0.843 18 C -0.139 4.139 19 C 0.532 3.468 20 O -0.536 6.536 21 N -0.666 5.666 22 C 0.728 3.272 23 O -0.601 6.601 24 N -0.693 5.693 25 H 0.052 0.948 26 H 0.042 0.958 27 H 0.078 0.922 28 H 0.060 0.940 29 H 0.049 0.951 30 H 0.035 0.965 31 H 0.109 0.891 32 H 0.272 0.728 33 H 0.127 0.873 34 H 0.163 0.837 35 H 0.425 0.575 36 H 0.431 0.569 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.799 -0.402 -6.246 6.856 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.318 6.318 3 C -0.021 4.021 4 C -0.006 4.006 5 N -0.157 5.157 6 C -0.480 4.480 7 H 0.130 0.870 8 C -0.192 4.192 9 N -0.525 5.525 10 Si 0.798 3.202 11 H -0.207 1.207 12 H -0.219 1.219 13 H -0.171 1.171 14 C 0.230 3.770 15 O -0.492 6.492 16 C 0.031 3.969 17 H 0.174 0.826 18 C -0.179 4.179 19 C 0.322 3.678 20 O -0.411 6.411 21 N -0.333 5.333 22 C 0.428 3.572 23 O -0.480 6.480 24 N -0.350 5.350 25 H 0.071 0.929 26 H 0.061 0.939 27 H 0.096 0.904 28 H 0.078 0.922 29 H 0.067 0.933 30 H 0.054 0.946 31 H 0.126 0.874 32 H 0.081 0.919 33 H 0.145 0.855 34 H 0.180 0.820 35 H 0.265 0.735 36 H 0.271 0.729 Dipole moment (debyes) X Y Z Total from point charges -3.104 -1.107 -5.718 6.600 hybrid contribution -0.106 0.806 0.289 0.862 sum -3.209 -0.302 -5.429 6.314 Atomic orbital electron populations 1.22780 0.81115 1.02468 1.00334 1.88126 1.20042 1.28306 1.95344 1.22959 0.94699 0.84526 0.99910 1.21383 0.91355 1.00619 0.87271 1.43465 1.56838 1.03861 1.11544 1.19918 1.36929 1.02950 0.88247 0.87038 1.26124 0.92648 1.01162 0.99275 1.70018 1.30416 1.23437 1.28644 0.85214 0.76929 0.78338 0.79752 1.20725 1.21871 1.17143 1.21309 0.81993 0.83671 0.90024 1.90599 1.54280 1.62726 1.41565 1.21003 0.98064 0.84909 0.92939 0.82565 1.22248 0.96321 0.97583 1.01723 1.21289 0.88465 0.83054 0.74977 1.90714 1.16262 1.78886 1.55238 1.44019 1.10479 1.22604 1.56237 1.15602 0.80865 0.84105 0.76619 1.90948 1.71192 1.32461 1.53431 1.44776 1.11857 1.05042 1.73297 0.92924 0.93916 0.90355 0.92239 0.93307 0.94595 0.87378 0.91866 0.85461 0.81979 0.73457 0.72860 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.95 11.01 113.37 1.25 2.19 16 2 O -0.40 -16.82 9.31 -137.00 -1.27 -18.09 16 3 C 0.06 2.21 6.28 71.98 0.45 2.67 16 4 C 0.12 5.29 5.44 86.38 0.47 5.76 16 5 N -0.44 -19.31 2.50 -635.55 -1.59 -20.89 16 6 C -0.35 -14.59 7.99 84.04 0.67 -13.92 16 7 H 0.11 4.05 6.24 -2.91 -0.02 4.03 16 8 C 0.01 0.51 5.01 84.93 0.43 0.93 16 9 N -0.89 -41.31 11.39 21.66 0.25 -41.06 16 10 Si 0.97 33.51 29.60 68.60 2.03 35.54 16 11 H -0.28 -9.87 7.11 99.48 0.71 -9.17 16 12 H -0.29 -10.47 7.11 99.48 0.71 -9.76 16 13 H -0.25 -7.77 7.11 99.48 0.71 -7.07 16 14 C 0.44 19.02 6.15 87.66 0.54 19.56 16 15 O -0.61 -30.46 14.78 8.92 0.13 -30.32 16 16 C 0.14 4.42 2.86 44.27 0.13 4.55 16 17 H 0.16 4.35 7.20 -2.39 -0.02 4.33 16 18 C -0.14 -3.80 5.43 29.89 0.16 -3.64 16 19 C 0.53 17.72 7.44 87.72 0.65 18.38 16 20 O -0.54 -20.54 17.93 -2.88 -0.05 -20.60 16 21 N -0.67 -21.82 5.18 -441.65 -2.29 -24.11 16 22 C 0.73 25.33 7.92 179.34 1.42 26.75 16 23 O -0.60 -23.93 17.97 -3.82 -0.07 -24.00 16 24 N -0.69 -21.43 4.97 -462.65 -2.30 -23.73 16 25 H 0.05 1.42 8.14 -2.39 -0.02 1.40 16 26 H 0.04 1.26 8.14 -2.38 -0.02 1.24 16 27 H 0.08 2.43 8.14 -2.39 -0.02 2.41 16 28 H 0.06 2.03 8.14 -2.39 -0.02 2.01 16 29 H 0.05 1.88 8.14 -2.39 -0.02 1.86 16 30 H 0.04 1.76 7.49 -2.39 -0.02 1.74 16 31 H 0.11 5.02 5.51 -2.38 -0.01 5.01 16 32 H 0.27 12.07 8.32 -92.71 -0.77 11.30 16 33 H 0.13 3.68 6.98 -2.39 -0.02 3.66 16 34 H 0.16 2.91 8.14 -2.39 -0.02 2.89 16 35 H 0.42 12.88 8.86 -92.71 -0.82 12.06 16 36 H 0.43 11.68 8.90 -92.71 -0.83 10.85 16 Total: -1.00 -65.76 308.82 0.51 -65.25 By element: Atomic # 1 Polarization: 39.30 SS G_CDS: -0.50 Total: 38.81 kcal Atomic # 6 Polarization: 57.05 SS G_CDS: 6.17 Total: 63.22 kcal Atomic # 7 Polarization: -103.87 SS G_CDS: -5.93 Total: -109.80 kcal Atomic # 8 Polarization: -91.75 SS G_CDS: -1.26 Total: -93.02 kcal Atomic # 14 Polarization: 33.51 SS G_CDS: 2.03 Total: 35.54 kcal Total: -65.76 0.51 -65.25 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597754579.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -90.535 kcal (2) G-P(sol) polarization free energy of solvation -65.761 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -156.296 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.514 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.247 kcal (6) G-S(sol) free energy of system = (1) + (5) -155.783 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds