Wall clock time and date at job start Wed Apr 15 2020 11:47:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.39442 * 125.69496 * 2 1 4 4 C 1.36710 * 107.86690 * 179.89383 * 3 2 1 5 5 N 1.38463 * 126.34107 * 180.16973 * 4 3 2 6 6 C 1.34770 * 120.00104 * 0.23356 * 5 4 3 7 7 O 1.21835 * 120.00060 * 359.97438 * 6 5 4 8 8 C 1.41461 * 120.00185 * 180.02562 * 6 5 4 9 9 H 1.07999 * 120.00028 * 359.97438 * 8 6 5 10 10 C 1.40162 * 120.00045 * 180.02562 * 8 6 5 11 11 N 1.30616 * 120.00154 * 359.97438 * 10 8 6 12 12 Si 1.86798 * 119.99994 * 179.97438 * 10 8 6 13 13 H 1.48496 * 109.47304 * 59.99468 * 12 10 8 14 14 H 1.48501 * 109.47188 * 179.97438 * 12 10 8 15 15 H 1.48500 * 109.47320 * 299.99471 * 12 10 8 16 16 N 1.36437 * 107.31746 * 0.36649 * 4 3 2 17 17 C 1.40085 * 126.14653 * 179.74916 * 16 4 3 18 18 C 1.38872 * 120.07015 * 324.72361 * 17 16 4 19 19 C 1.38108 * 119.92899 * 179.76826 * 18 17 16 20 20 C 1.38289 * 120.07063 * 0.48506 * 19 18 17 21 21 C 1.50696 * 119.93092 * 179.74664 * 20 19 18 22 22 C 1.38289 * 120.13959 * 359.76929 * 20 19 18 23 23 C 1.38115 * 120.06905 * 0.02562 * 22 20 19 24 24 N 1.31079 * 125.69215 * 180.31127 * 2 1 3 25 25 H 1.09001 * 109.46953 * 269.71191 * 1 2 3 26 26 H 1.09000 * 109.47318 * 29.70789 * 1 2 3 27 27 H 1.09000 * 109.47161 * 149.71419 * 1 2 3 28 28 H 1.07993 * 126.06674 * 0.02562 * 3 2 1 29 29 H 0.97010 * 119.99898 * 180.23590 * 5 4 3 30 30 H 0.97003 * 120.00502 * 180.02562 * 11 10 8 31 31 H 1.08006 * 120.03829 * 359.97438 * 18 17 16 32 32 H 1.08007 * 119.96422 * 180.23230 * 19 18 17 33 33 H 1.09007 * 109.47341 * 270.02817 * 21 20 19 34 34 H 1.09004 * 109.47192 * 30.02447 * 21 20 19 35 35 H 1.09000 * 109.47502 * 150.02456 * 21 20 19 36 36 H 1.07997 * 119.96838 * 179.97438 * 22 20 19 37 37 H 1.07998 * 120.03102 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3207 1.1325 0.0000 4 6 3.6221 0.7139 0.0024 5 7 4.7447 1.5245 0.0065 6 6 4.6078 2.8652 0.0133 7 8 3.4963 3.3640 0.0153 8 6 5.7547 3.6933 0.0169 9 1 6.7400 3.2512 0.0147 10 6 5.6123 5.0876 0.0245 11 7 4.4206 5.6224 0.0277 12 14 7.1267 6.1812 0.0301 13 1 7.9376 5.9099 -1.1840 14 1 6.7084 7.6060 0.0372 15 1 7.9381 5.8970 1.2409 16 7 3.6100 -0.6504 -0.0045 17 6 4.7338 -1.4867 -0.0097 18 6 5.8771 -1.1115 -0.7029 19 6 6.9851 -1.9360 -0.7022 20 6 6.9533 -3.1388 -0.0204 21 6 8.1621 -4.0387 -0.0265 22 6 5.8145 -3.5177 0.6665 23 6 4.7046 -2.6956 0.6731 24 7 2.2718 -1.0646 -0.0058 25 1 -0.3633 -0.0052 1.0277 26 1 -0.3634 0.8926 -0.5093 27 1 -0.3633 -0.8874 -0.5183 28 1 1.9827 2.1581 0.0004 29 1 5.6298 1.1273 0.0045 30 1 4.3220 6.5874 0.0326 31 1 5.9010 -0.1744 -1.2394 32 1 7.8759 -1.6431 -1.2381 33 1 8.1006 -4.7242 -0.8718 34 1 9.0648 -3.4340 -0.1141 35 1 8.1954 -4.6087 0.9020 36 1 5.7925 -4.4577 1.1976 37 1 3.8154 -2.9923 1.2094 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000003324624.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:47:16 Heat of formation + Delta-G solvation = 64.887262 kcal Electronic energy + Delta-G solvation = -21648.173236 eV Core-core repulsion = 18392.058185 eV Total energy + Delta-G solvation = -3256.115051 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 285.122 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.99209 -39.03111 -37.67843 -34.40579 -33.48138 -32.48900 -31.26153 -30.95798 -28.70635 -28.20738 -26.44489 -25.47653 -22.99608 -21.93998 -21.08240 -19.52694 -19.36229 -17.86621 -16.92862 -15.70038 -15.62176 -15.41338 -14.86770 -14.48115 -14.20903 -13.95275 -13.82543 -13.45862 -13.04580 -12.90511 -12.77322 -12.56231 -12.45225 -12.12470 -11.91876 -11.78849 -11.49488 -11.42624 -11.19370 -11.03911 -10.74918 -10.47606 -9.91496 -9.75167 -9.32463 -9.00195 -8.99634 -7.81715 -7.68356 -7.08485 -6.48769 -5.03533 1.11097 1.35077 2.57941 2.77204 3.01761 3.07407 3.09347 3.53267 3.73081 3.90030 4.34286 4.40534 4.77255 4.81226 4.96289 5.05151 5.29440 5.34534 5.47211 5.53683 5.59660 5.65760 5.68213 5.86184 5.96739 5.97131 6.11371 6.22086 6.27194 6.39375 6.54001 6.58977 6.80542 6.94494 7.10049 7.18932 7.59133 7.68537 7.91168 8.06054 8.37522 8.68126 9.10720 10.25168 10.43763 Molecular weight = 285.12amu Principal moments of inertia in cm(-1) A = 0.013125 B = 0.005520 C = 0.003948 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2132.890997 B = 5070.891551 C = 7089.983146 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 C 0.092 3.908 3 C -0.297 4.297 4 C 0.351 3.649 5 N -0.670 5.670 6 C 0.545 3.455 7 O -0.550 6.550 8 C -0.533 4.533 9 H 0.071 0.929 10 C 0.089 3.911 11 N -0.742 5.742 12 Si 0.916 3.084 13 H -0.265 1.265 14 H -0.277 1.277 15 H -0.265 1.265 16 N -0.364 5.364 17 C 0.175 3.825 18 C -0.146 4.146 19 C -0.092 4.092 20 C -0.106 4.106 21 C -0.110 4.110 22 C -0.099 4.099 23 C -0.117 4.117 24 N -0.324 5.324 25 H 0.073 0.927 26 H 0.077 0.923 27 H 0.066 0.934 28 H 0.180 0.820 29 H 0.392 0.608 30 H 0.276 0.724 31 H 0.132 0.868 32 H 0.130 0.870 33 H 0.068 0.932 34 H 0.066 0.934 35 H 0.065 0.935 36 H 0.127 0.873 37 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.307 -13.402 -0.037 14.078 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.073 4.073 3 C -0.329 4.329 4 C 0.132 3.868 5 N -0.317 5.317 6 C 0.355 3.645 7 O -0.431 6.431 8 C -0.568 4.568 9 H 0.090 0.910 10 C -0.135 4.135 11 N -0.369 5.369 12 Si 0.740 3.260 13 H -0.190 1.190 14 H -0.202 1.202 15 H -0.190 1.190 16 N -0.147 5.147 17 C 0.082 3.918 18 C -0.167 4.167 19 C -0.110 4.110 20 C -0.107 4.107 21 C -0.167 4.167 22 C -0.118 4.118 23 C -0.137 4.137 24 N -0.146 5.146 25 H 0.092 0.908 26 H 0.096 0.904 27 H 0.085 0.915 28 H 0.197 0.803 29 H 0.227 0.773 30 H 0.087 0.913 31 H 0.149 0.851 32 H 0.148 0.852 33 H 0.087 0.913 34 H 0.085 0.915 35 H 0.084 0.916 36 H 0.145 0.855 37 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 3.508 -14.006 -0.036 14.439 hybrid contribution 1.284 1.172 0.006 1.739 sum 4.792 -12.835 -0.030 13.700 Atomic orbital electron populations 1.20122 0.87063 1.02804 1.02529 1.22272 0.96638 0.91273 0.97159 1.21718 0.88724 1.00961 1.21479 1.18775 0.91133 0.80362 0.96531 1.44138 1.04728 1.07655 1.75210 1.17024 0.91398 0.77507 0.78615 1.90593 1.26880 1.71226 1.54405 1.19855 0.92756 0.91129 1.53098 0.91037 1.25746 0.97010 0.98406 0.92376 1.69973 1.23178 1.12473 1.31305 0.86274 0.81371 0.78571 0.79776 1.18950 1.20175 1.18955 1.45967 1.04334 1.02165 1.62215 1.17491 0.85112 0.91712 0.97469 1.21127 0.93256 1.01893 1.00428 1.20836 0.97724 0.93506 0.98965 1.19912 0.96079 0.95845 0.98856 1.20744 0.95116 0.98520 1.02285 1.20887 0.92208 0.99330 0.99382 1.20957 0.99403 0.93843 0.99486 1.77378 0.84196 1.21427 1.31613 0.90826 0.90386 0.91514 0.80340 0.77303 0.91296 0.85050 0.85194 0.91330 0.91511 0.91645 0.85535 0.85072 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.99 10.44 36.01 0.38 -0.61 16 2 C 0.09 1.85 7.19 -82.46 -0.59 1.26 16 3 C -0.30 -6.96 9.57 -39.69 -0.38 -7.34 16 4 C 0.35 8.14 7.41 -152.86 -1.13 7.00 16 5 N -0.67 -15.66 4.98 -13.94 -0.07 -15.73 16 6 C 0.55 14.99 7.52 -15.03 -0.11 14.88 16 7 O -0.55 -16.77 11.98 5.07 0.06 -16.71 16 8 C -0.53 -14.14 9.30 -37.63 -0.35 -14.49 16 9 H 0.07 1.71 7.85 -52.49 -0.41 1.29 16 10 C 0.09 2.30 5.50 -17.35 -0.10 2.21 16 11 N -0.74 -20.71 11.72 55.56 0.65 -20.06 16 12 Si 0.92 18.72 29.56 -169.99 -5.02 13.70 16 13 H -0.26 -5.26 7.11 56.52 0.40 -4.86 16 14 H -0.28 -5.52 7.11 56.52 0.40 -5.12 16 15 H -0.26 -5.29 7.11 56.52 0.40 -4.89 16 16 N -0.36 -7.57 3.77 -9.75 -0.04 -7.61 16 17 C 0.18 3.10 6.39 -83.62 -0.53 2.57 16 18 C -0.15 -2.30 8.45 -39.39 -0.33 -2.63 16 19 C -0.09 -1.16 9.69 -39.61 -0.38 -1.54 16 20 C -0.11 -1.22 5.88 -104.59 -0.62 -1.84 16 21 C -0.11 -0.90 10.01 36.00 0.36 -0.54 16 22 C -0.10 -1.21 9.69 -39.61 -0.38 -1.60 16 23 C -0.12 -1.78 9.77 -39.39 -0.38 -2.16 16 24 N -0.32 -6.69 12.34 33.63 0.41 -6.28 16 25 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 26 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 27 H 0.07 0.88 8.14 -51.93 -0.42 0.45 16 28 H 0.18 4.62 5.82 -52.49 -0.31 4.32 16 29 H 0.39 8.01 6.07 -40.82 -0.25 7.76 16 30 H 0.28 6.94 8.29 -40.82 -0.34 6.61 16 31 H 0.13 2.15 6.34 -52.48 -0.33 1.82 16 32 H 0.13 1.31 8.06 -52.48 -0.42 0.89 16 33 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 34 H 0.07 0.49 8.08 -51.93 -0.42 0.07 16 35 H 0.06 0.47 8.08 -51.93 -0.42 0.05 16 36 H 0.13 1.19 8.06 -52.49 -0.42 0.77 16 37 H 0.13 1.99 8.06 -52.49 -0.42 1.56 16 LS Contribution 319.75 15.07 4.82 4.82 Total: -1.00 -32.71 319.75 -7.98 -40.69 By element: Atomic # 1 Polarization: 16.23 SS G_CDS: -4.23 Total: 12.00 kcal Atomic # 6 Polarization: -0.26 SS G_CDS: -4.56 Total: -4.82 kcal Atomic # 7 Polarization: -50.64 SS G_CDS: 0.96 Total: -49.68 kcal Atomic # 8 Polarization: -16.77 SS G_CDS: 0.06 Total: -16.71 kcal Atomic # 14 Polarization: 18.72 SS G_CDS: -5.02 Total: 13.70 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -32.71 -7.98 -40.69 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000003324624.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.579 kcal (2) G-P(sol) polarization free energy of solvation -32.712 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.866 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.979 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.691 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.887 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds