Wall clock time and date at job start Wed Apr 15 2020 11:47:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.39442 * 125.69496 * 2 1 4 4 C 1.36710 * 107.86690 * 179.89383 * 3 2 1 5 5 N 1.38463 * 126.34107 * 180.16973 * 4 3 2 6 6 C 1.34770 * 120.00104 * 0.23356 * 5 4 3 7 7 O 1.21835 * 120.00060 * 359.97438 * 6 5 4 8 8 C 1.41461 * 120.00185 * 180.02562 * 6 5 4 9 9 H 1.07999 * 120.00028 * 359.97438 * 8 6 5 10 10 C 1.40162 * 120.00045 * 180.02562 * 8 6 5 11 11 N 1.30616 * 120.00154 * 359.97438 * 10 8 6 12 12 Si 1.86798 * 119.99994 * 179.97438 * 10 8 6 13 13 H 1.48496 * 109.47304 * 59.99468 * 12 10 8 14 14 H 1.48501 * 109.47188 * 179.97438 * 12 10 8 15 15 H 1.48500 * 109.47320 * 299.99471 * 12 10 8 16 16 N 1.36437 * 107.31746 * 0.36649 * 4 3 2 17 17 C 1.40085 * 126.14653 * 179.74916 * 16 4 3 18 18 C 1.38872 * 120.07015 * 324.72361 * 17 16 4 19 19 C 1.38108 * 119.92899 * 179.76826 * 18 17 16 20 20 C 1.38289 * 120.07063 * 0.48506 * 19 18 17 21 21 C 1.50696 * 119.93092 * 179.74664 * 20 19 18 22 22 C 1.38289 * 120.13959 * 359.76929 * 20 19 18 23 23 C 1.38115 * 120.06905 * 0.02562 * 22 20 19 24 24 N 1.31079 * 125.69215 * 180.31127 * 2 1 3 25 25 H 1.09001 * 109.46953 * 269.71191 * 1 2 3 26 26 H 1.09000 * 109.47318 * 29.70789 * 1 2 3 27 27 H 1.09000 * 109.47161 * 149.71419 * 1 2 3 28 28 H 1.07993 * 126.06674 * 0.02562 * 3 2 1 29 29 H 0.97010 * 119.99898 * 180.23590 * 5 4 3 30 30 H 0.97003 * 120.00502 * 180.02562 * 11 10 8 31 31 H 1.08006 * 120.03829 * 359.97438 * 18 17 16 32 32 H 1.08007 * 119.96422 * 180.23230 * 19 18 17 33 33 H 1.09007 * 109.47341 * 270.02817 * 21 20 19 34 34 H 1.09004 * 109.47192 * 30.02447 * 21 20 19 35 35 H 1.09000 * 109.47502 * 150.02456 * 21 20 19 36 36 H 1.07997 * 119.96838 * 179.97438 * 22 20 19 37 37 H 1.07998 * 120.03102 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3207 1.1325 0.0000 4 6 3.6221 0.7139 0.0024 5 7 4.7447 1.5245 0.0065 6 6 4.6078 2.8652 0.0133 7 8 3.4963 3.3640 0.0153 8 6 5.7547 3.6933 0.0169 9 1 6.7400 3.2512 0.0147 10 6 5.6123 5.0876 0.0245 11 7 4.4206 5.6224 0.0277 12 14 7.1267 6.1812 0.0301 13 1 7.9376 5.9099 -1.1840 14 1 6.7084 7.6060 0.0372 15 1 7.9381 5.8970 1.2409 16 7 3.6100 -0.6504 -0.0045 17 6 4.7338 -1.4867 -0.0097 18 6 5.8771 -1.1115 -0.7029 19 6 6.9851 -1.9360 -0.7022 20 6 6.9533 -3.1388 -0.0204 21 6 8.1621 -4.0387 -0.0265 22 6 5.8145 -3.5177 0.6665 23 6 4.7046 -2.6956 0.6731 24 7 2.2718 -1.0646 -0.0058 25 1 -0.3633 -0.0052 1.0277 26 1 -0.3634 0.8926 -0.5093 27 1 -0.3633 -0.8874 -0.5183 28 1 1.9827 2.1581 0.0004 29 1 5.6298 1.1273 0.0045 30 1 4.3220 6.5874 0.0326 31 1 5.9010 -0.1744 -1.2394 32 1 7.8759 -1.6431 -1.2381 33 1 8.1006 -4.7242 -0.8718 34 1 9.0648 -3.4340 -0.1141 35 1 8.1954 -4.6087 0.9020 36 1 5.7925 -4.4577 1.1976 37 1 3.8154 -2.9923 1.2094 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000003324624.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:47:15 Heat of formation + Delta-G solvation = 45.129399 kcal Electronic energy + Delta-G solvation = -21649.030001 eV Core-core repulsion = 18392.058185 eV Total energy + Delta-G solvation = -3256.971816 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 285.122 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -42.59467 -40.20613 -39.65011 -35.94588 -35.17082 -34.45279 -32.48246 -32.08094 -30.46227 -29.43891 -28.39863 -26.59172 -24.26921 -23.46816 -22.48174 -21.15066 -21.07658 -19.45765 -18.73524 -17.62701 -16.92098 -16.73980 -16.38453 -15.90287 -15.77774 -15.31857 -14.93449 -14.70003 -14.64588 -14.45831 -14.29719 -13.90268 -13.73870 -13.41491 -13.13070 -12.98999 -12.94051 -12.81211 -12.76335 -12.49813 -12.12143 -12.06737 -11.58726 -11.54307 -10.96498 -10.61177 -10.10006 -9.93147 -9.02915 -8.93670 -8.46042 -7.12446 -0.11295 0.26506 1.00781 1.22546 1.40809 1.42256 1.56029 1.80915 2.18450 2.38144 2.56722 2.72730 3.52851 3.56161 3.81772 3.85515 3.96475 4.10498 4.32539 4.37559 4.46421 4.67627 4.76309 4.81899 4.87140 4.91735 4.94073 5.01599 5.10197 5.13588 5.28200 5.29108 5.29979 5.47120 5.56009 5.72294 5.81753 5.96392 5.98377 6.33284 6.64785 6.70758 7.19197 8.23522 8.46246 Molecular weight = 285.12amu Principal moments of inertia in cm(-1) A = 0.013125 B = 0.005520 C = 0.003948 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2132.890997 B = 5070.891551 C = 7089.983146 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 C 0.093 3.907 3 C -0.327 4.327 4 C 0.330 3.670 5 N -0.662 5.662 6 C 0.528 3.472 7 O -0.593 6.593 8 C -0.556 4.556 9 H 0.094 0.906 10 C 0.034 3.966 11 N -0.793 5.793 12 Si 1.005 2.995 13 H -0.251 1.251 14 H -0.270 1.270 15 H -0.253 1.253 16 N -0.359 5.359 17 C 0.126 3.874 18 C -0.157 4.157 19 C -0.090 4.090 20 C -0.091 4.091 21 C -0.109 4.109 22 C -0.093 4.093 23 C -0.123 4.123 24 N -0.326 5.326 25 H 0.092 0.908 26 H 0.085 0.915 27 H 0.088 0.912 28 H 0.148 0.852 29 H 0.404 0.596 30 H 0.283 0.717 31 H 0.116 0.884 32 H 0.159 0.841 33 H 0.084 0.916 34 H 0.079 0.921 35 H 0.081 0.919 36 H 0.162 0.838 37 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.141 -15.426 0.107 16.999 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.073 4.073 3 C -0.359 4.359 4 C 0.110 3.890 5 N -0.311 5.311 6 C 0.339 3.661 7 O -0.478 6.478 8 C -0.591 4.591 9 H 0.112 0.888 10 C -0.185 4.185 11 N -0.421 5.421 12 Si 0.823 3.177 13 H -0.175 1.175 14 H -0.195 1.195 15 H -0.176 1.176 16 N -0.141 5.141 17 C 0.035 3.965 18 C -0.178 4.178 19 C -0.108 4.108 20 C -0.092 4.092 21 C -0.166 4.166 22 C -0.112 4.112 23 C -0.144 4.144 24 N -0.148 5.148 25 H 0.111 0.889 26 H 0.103 0.897 27 H 0.107 0.893 28 H 0.166 0.834 29 H 0.241 0.759 30 H 0.094 0.906 31 H 0.133 0.867 32 H 0.176 0.824 33 H 0.102 0.898 34 H 0.098 0.902 35 H 0.100 0.900 36 H 0.179 0.821 37 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 6.369 -16.116 0.106 17.329 hybrid contribution 0.457 1.615 -0.044 1.679 sum 6.826 -14.501 0.062 16.028 Atomic orbital electron populations 1.20295 0.83454 1.04224 1.04195 1.22879 0.98806 0.89584 0.96073 1.21593 0.90104 1.00723 1.23467 1.18822 0.90928 0.81787 0.97431 1.43672 1.05525 1.06742 1.75119 1.17468 0.91378 0.78789 0.78505 1.90570 1.28264 1.72598 1.56350 1.20395 0.93360 0.92092 1.53207 0.88789 1.27037 1.00831 0.99778 0.90867 1.70121 1.26389 1.13362 1.32188 0.84951 0.76247 0.75943 0.80547 1.17506 1.19472 1.17649 1.46088 1.05141 1.01411 1.61476 1.17958 0.84973 0.92939 1.00642 1.21161 0.93901 1.02040 1.00743 1.21201 0.97435 0.93393 0.98816 1.20411 0.96984 0.95400 0.96366 1.20852 0.93536 0.98326 1.03845 1.21289 0.91114 0.99858 0.98889 1.21067 1.00522 0.93388 0.99379 1.77295 0.84495 1.21723 1.31312 0.88908 0.89655 0.89323 0.83435 0.75881 0.90635 0.86650 0.82388 0.89756 0.90243 0.89977 0.82075 0.85626 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.87 10.44 71.24 0.74 -1.12 16 2 C 0.09 3.86 7.19 42.96 0.31 4.17 16 3 C -0.33 -16.41 9.57 22.20 0.21 -16.20 16 4 C 0.33 16.25 7.41 131.42 0.97 17.22 16 5 N -0.66 -32.73 4.98 -316.18 -1.58 -34.31 16 6 C 0.53 30.65 7.52 85.04 0.64 31.29 16 7 O -0.59 -38.69 11.98 -4.78 -0.06 -38.75 16 8 C -0.56 -30.20 9.30 23.53 0.22 -29.98 16 9 H 0.09 4.49 7.85 -2.91 -0.02 4.46 16 10 C 0.03 1.81 5.50 85.34 0.47 2.28 16 11 N -0.79 -45.88 11.72 21.86 0.26 -45.62 16 12 Si 1.01 38.07 29.56 68.60 2.03 40.09 16 13 H -0.25 -8.91 7.11 99.48 0.71 -8.21 16 14 H -0.27 -9.84 7.11 99.48 0.71 -9.13 16 15 H -0.25 -9.01 7.11 99.48 0.71 -8.31 16 16 N -0.36 -15.52 3.77 -184.77 -0.70 -16.21 16 17 C 0.13 4.53 6.39 38.13 0.24 4.78 16 18 C -0.16 -4.96 8.45 22.39 0.19 -4.77 16 19 C -0.09 -2.07 9.69 22.25 0.22 -1.85 16 20 C -0.09 -1.77 5.88 -19.84 -0.12 -1.89 16 21 C -0.11 -1.24 10.01 71.23 0.71 -0.53 16 22 C -0.09 -2.00 9.69 22.25 0.22 -1.78 16 23 C -0.12 -3.67 9.77 22.39 0.22 -3.45 16 24 N -0.33 -13.82 12.34 -47.53 -0.59 -14.41 16 25 H 0.09 2.39 8.14 -2.39 -0.02 2.37 16 26 H 0.08 2.38 8.14 -2.39 -0.02 2.36 16 27 H 0.09 2.22 8.14 -2.39 -0.02 2.20 16 28 H 0.15 8.37 5.82 -2.91 -0.02 8.35 16 29 H 0.40 17.31 6.07 -92.70 -0.56 16.74 16 30 H 0.28 14.70 8.29 -92.71 -0.77 13.93 16 31 H 0.12 3.93 6.34 -2.91 -0.02 3.91 16 32 H 0.16 2.68 8.06 -2.91 -0.02 2.65 16 33 H 0.08 0.79 8.14 -2.38 -0.02 0.77 16 34 H 0.08 0.77 8.08 -2.39 -0.02 0.75 16 35 H 0.08 0.73 8.08 -2.39 -0.02 0.71 16 36 H 0.16 2.32 8.06 -2.91 -0.02 2.30 16 37 H 0.13 3.78 8.06 -2.91 -0.02 3.76 16 Total: -1.00 -76.57 319.75 5.16 -71.41 By element: Atomic # 1 Polarization: 39.08 SS G_CDS: 0.54 Total: 39.63 kcal Atomic # 6 Polarization: -7.09 SS G_CDS: 5.25 Total: -1.84 kcal Atomic # 7 Polarization: -107.94 SS G_CDS: -2.60 Total: -110.55 kcal Atomic # 8 Polarization: -38.69 SS G_CDS: -0.06 Total: -38.75 kcal Atomic # 14 Polarization: 38.07 SS G_CDS: 2.03 Total: 40.09 kcal Total: -76.57 5.16 -71.41 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000003324624.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.539 kcal (2) G-P(sol) polarization free energy of solvation -76.568 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.972 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.158 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.410 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.129 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds