Wall clock time and date at job start Wed Apr 15 2020 11:47:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.30275 * 126.28435 * 2 1 4 4 N 1.28670 * 109.38135 * 179.97438 * 3 2 1 5 5 C 1.30275 * 109.38235 * 359.97438 * 4 3 2 6 6 C 1.50695 * 126.28315 * 179.97438 * 5 4 3 7 7 H 1.08999 * 109.76579 * 187.85928 * 6 5 4 8 8 C 1.52782 * 109.76979 * 67.06521 * 6 5 4 9 9 C 1.50599 * 110.85926 * 192.92620 * 8 6 5 10 10 C 1.38983 * 117.61994 * 199.47019 * 9 8 6 11 11 C 1.37905 * 120.57909 * 181.20145 * 10 9 8 12 12 C 1.38269 * 119.82775 * 359.97438 * 11 10 9 13 13 C 1.37952 * 119.71808 * 359.73267 * 12 11 10 14 14 C 1.37671 * 122.85449 * 20.19871 * 9 8 6 15 15 C 1.50808 * 122.35013 * 358.46889 * 14 9 8 16 16 N 1.46682 * 109.67136 * 11.60973 * 15 14 9 17 17 C 1.36936 * 121.33358 * 135.56930 * 16 15 14 18 18 H 1.08000 * 120.00182 * 144.09523 * 17 16 15 19 19 C 1.38816 * 119.99583 * 324.08672 * 17 16 15 20 20 N 1.31623 * 119.99371 * 158.35511 * 19 17 16 21 21 Si 1.86788 * 120.00372 * 338.35141 * 19 17 16 22 22 H 1.48504 * 109.47047 * 85.53602 * 21 19 17 23 23 H 1.48503 * 109.47507 * 205.53788 * 21 19 17 24 24 H 1.48502 * 109.47414 * 325.53691 * 21 19 17 25 25 O 1.34365 * 107.43315 * 359.75874 * 5 4 3 26 26 H 1.08994 * 109.47125 * 90.02512 * 1 2 3 27 27 H 1.09002 * 109.47067 * 330.02716 * 1 2 3 28 28 H 1.09000 * 109.47133 * 210.02496 * 1 2 3 29 29 H 1.08998 * 109.20535 * 313.28789 * 8 6 5 30 30 H 1.09003 * 109.19926 * 72.57661 * 8 6 5 31 31 H 1.07997 * 119.70879 * 1.22733 * 10 9 8 32 32 H 1.08000 * 120.08865 * 179.97438 * 11 10 9 33 33 H 1.07999 * 120.14124 * 179.76175 * 12 11 10 34 34 H 1.08001 * 119.74915 * 180.02562 * 13 12 11 35 35 H 1.08993 * 109.44061 * 251.54004 * 15 14 9 36 36 H 1.09010 * 109.43326 * 131.66133 * 15 14 9 37 37 H 0.97006 * 119.99762 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2780 1.0501 0.0000 4 7 3.5091 0.6760 0.0005 5 6 3.5654 -0.6255 0.0015 6 6 4.8176 -1.4639 0.0018 7 1 4.5586 -2.5134 -0.1377 8 6 5.5590 -1.2849 1.3256 9 6 6.9524 -1.8499 1.2405 10 6 7.6023 -2.1443 2.4333 11 6 8.8888 -2.6409 2.4272 12 6 9.5400 -2.8492 1.2254 13 6 8.8952 -2.5636 0.0397 14 6 7.5985 -2.0671 0.0444 15 6 6.9477 -1.7868 -1.2868 16 7 5.7121 -1.0235 -1.0814 17 6 5.4031 0.0557 -1.8657 18 1 4.3760 0.2493 -2.1375 19 6 6.4101 0.9009 -2.3112 20 7 6.2142 1.6565 -3.3710 21 14 8.0431 0.9662 -1.4066 22 1 8.9329 -0.1094 -1.9132 23 1 8.6831 2.2867 -1.6349 24 1 7.8116 0.7732 0.0475 25 8 2.3021 -1.0831 0.0069 26 1 -0.3633 -0.0005 -1.0276 27 1 -0.3633 0.8902 0.5134 28 1 -0.3633 -0.8898 0.5142 29 1 5.6168 -0.2228 1.5635 30 1 5.0114 -1.7990 2.1155 31 1 7.0951 -1.9831 3.3730 32 1 9.3865 -2.8666 3.3588 33 1 10.5489 -3.2343 1.2149 34 1 9.4031 -2.7265 -0.8993 35 1 6.7139 -2.7292 -1.7819 36 1 7.6310 -1.2099 -1.9103 37 1 6.9180 2.2469 -3.6825 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000065512467.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:47:26 Heat of formation + Delta-G solvation = 103.234601 kcal Electronic energy + Delta-G solvation = -22730.018738 eV Core-core repulsion = 19475.566552 eV Total energy + Delta-G solvation = -3254.452186 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 285.122 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -43.59944 -39.61606 -36.55437 -35.51621 -33.21206 -32.39870 -31.77712 -30.64161 -29.39721 -27.19965 -25.65718 -24.29152 -22.89907 -22.04365 -21.80393 -21.32065 -19.11282 -17.31554 -17.00371 -16.28885 -16.19154 -15.45032 -14.98169 -14.77993 -14.42128 -14.05647 -13.85733 -13.39801 -13.15319 -12.94714 -12.79889 -12.61561 -12.31190 -12.26970 -12.01455 -11.71952 -11.41186 -11.31660 -11.13944 -10.76026 -10.63820 -10.43738 -10.15823 -10.08181 -9.57274 -8.86413 -8.59439 -8.45149 -8.15253 -7.04490 -5.98518 -3.43669 1.65222 1.66965 1.72513 2.71847 3.09134 3.29854 3.50247 3.60036 4.04639 4.30114 4.51274 4.70533 4.88635 5.09997 5.15277 5.23896 5.26132 5.30528 5.33935 5.37708 5.48149 5.55972 5.72263 5.75655 5.89105 5.89904 5.95788 6.14574 6.22001 6.25135 6.29522 6.31810 6.44684 6.59965 6.74553 6.76396 7.03244 7.31376 7.85273 8.27040 8.81702 9.02236 9.63197 9.95332 11.16185 Molecular weight = 285.12amu Principal moments of inertia in cm(-1) A = 0.016304 B = 0.007444 C = 0.005599 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1716.946758 B = 3760.551587 C = 4999.529862 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.049 4.049 2 C 0.132 3.868 3 N -0.290 5.290 4 N -0.234 5.234 5 C 0.182 3.818 6 C 0.264 3.736 7 H 0.074 0.926 8 C -0.093 4.093 9 C -0.057 4.057 10 C -0.123 4.123 11 C -0.130 4.130 12 C -0.128 4.128 13 C -0.120 4.120 14 C -0.086 4.086 15 C 0.167 3.833 16 N -0.594 5.594 17 C -0.255 4.255 18 H 0.083 0.917 19 C 0.045 3.955 20 N -0.894 5.894 21 Si 0.871 3.129 22 H -0.282 1.282 23 H -0.302 1.302 24 H -0.263 1.263 25 O -0.234 6.234 26 H 0.093 0.907 27 H 0.100 0.900 28 H 0.085 0.915 29 H 0.089 0.911 30 H 0.070 0.930 31 H 0.117 0.883 32 H 0.116 0.884 33 H 0.117 0.883 34 H 0.120 0.880 35 H 0.052 0.948 36 H 0.091 0.909 37 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.977 -10.040 10.006 14.484 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.079 4.079 3 N -0.139 5.139 4 N -0.079 5.079 5 C -0.028 4.028 6 C 0.156 3.844 7 H 0.091 0.909 8 C -0.133 4.133 9 C -0.057 4.057 10 C -0.141 4.141 11 C -0.148 4.148 12 C -0.146 4.146 13 C -0.139 4.139 14 C -0.088 4.088 15 C 0.043 3.957 16 N -0.320 5.320 17 C -0.383 4.383 18 H 0.101 0.899 19 C -0.156 4.156 20 N -0.535 5.535 21 Si 0.701 3.299 22 H -0.210 1.210 23 H -0.229 1.229 24 H -0.187 1.187 25 O -0.114 6.114 26 H 0.111 0.889 27 H 0.119 0.881 28 H 0.104 0.896 29 H 0.107 0.893 30 H 0.088 0.912 31 H 0.135 0.865 32 H 0.134 0.866 33 H 0.135 0.865 34 H 0.138 0.862 35 H 0.070 0.930 36 H 0.108 0.892 37 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -2.589 -8.633 9.863 13.361 hybrid contribution 0.745 -0.883 0.445 1.238 sum -1.845 -9.517 10.308 14.150 Atomic orbital electron populations 1.20186 0.81012 1.04821 1.04707 1.27799 0.97494 0.80420 1.02178 1.74474 0.96880 1.25883 1.16627 1.74646 1.09905 1.09084 1.14261 1.27668 0.84072 0.91697 0.99398 1.18946 0.81755 0.93657 0.90010 0.90867 1.20972 0.92549 1.02381 0.97357 1.19342 0.95778 0.98153 0.92419 1.21106 0.95333 1.00435 0.97275 1.20923 0.95118 1.01044 0.97687 1.20973 0.99597 1.01355 0.92641 1.21101 0.94521 0.99911 0.98324 1.20434 0.94389 0.97462 0.96480 1.20292 0.87867 0.96061 0.91442 1.44376 1.20644 1.33569 1.33454 1.18599 0.95469 1.01748 1.22507 0.89905 1.25369 0.98102 0.95505 0.96629 1.69822 1.34166 1.27469 1.22045 0.87179 0.84332 0.75847 0.82533 1.20966 1.22926 1.18728 1.84700 1.17879 1.38494 1.70347 0.88874 0.88132 0.89587 0.89290 0.91169 0.86509 0.86559 0.86457 0.86207 0.93024 0.89165 0.92550 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 -0.51 10.51 36.01 0.38 -0.13 16 2 C 0.13 2.27 8.48 -12.94 -0.11 2.16 16 3 N -0.29 -6.22 12.22 32.55 0.40 -5.82 16 4 N -0.23 -5.58 10.33 32.55 0.34 -5.25 16 5 C 0.18 3.87 6.11 -12.94 -0.08 3.80 16 6 C 0.26 5.30 3.40 -68.80 -0.23 5.06 16 7 H 0.07 1.31 8.14 -51.93 -0.42 0.88 16 8 C -0.09 -1.68 5.20 -28.04 -0.15 -1.82 16 9 C -0.06 -1.02 5.76 -104.60 -0.60 -1.62 16 10 C -0.12 -1.89 9.59 -39.43 -0.38 -2.27 16 11 C -0.13 -1.81 10.04 -39.69 -0.40 -2.21 16 12 C -0.13 -1.84 10.05 -39.67 -0.40 -2.24 16 13 C -0.12 -2.00 9.62 -39.46 -0.38 -2.38 16 14 C -0.09 -1.64 4.62 -104.55 -0.48 -2.12 16 15 C 0.17 3.54 5.14 -5.04 -0.03 3.51 16 16 N -0.59 -14.00 2.57 -167.71 -0.43 -14.43 16 17 C -0.26 -7.16 8.33 -15.06 -0.13 -7.28 16 18 H 0.08 2.59 6.72 -52.49 -0.35 2.24 16 19 C 0.05 1.33 5.27 -17.43 -0.09 1.23 16 20 N -0.89 -27.76 13.97 55.49 0.78 -26.98 16 21 Si 0.87 22.64 24.47 -169.99 -4.16 18.48 16 22 H -0.28 -6.82 6.26 56.52 0.35 -6.46 16 23 H -0.30 -8.07 7.11 56.52 0.40 -7.67 16 24 H -0.26 -6.91 7.04 56.52 0.40 -6.51 16 25 O -0.23 -4.38 10.87 5.37 0.06 -4.32 16 26 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 27 H 0.10 0.88 8.14 -51.93 -0.42 0.46 16 28 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 29 H 0.09 1.81 8.07 -51.93 -0.42 1.39 16 30 H 0.07 1.03 8.11 -51.93 -0.42 0.61 16 31 H 0.12 1.50 8.05 -52.49 -0.42 1.08 16 32 H 0.12 1.28 8.06 -52.49 -0.42 0.85 16 33 H 0.12 1.35 8.06 -52.49 -0.42 0.93 16 34 H 0.12 1.81 8.05 -52.49 -0.42 1.39 16 35 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 36 H 0.09 2.09 3.75 -51.92 -0.19 1.90 16 37 H 0.26 7.80 8.31 -40.82 -0.34 7.46 16 LS Contribution 304.84 15.07 4.59 4.59 Total: -1.00 -34.38 304.84 -5.88 -40.26 By element: Atomic # 1 Polarization: 4.15 SS G_CDS: -4.38 Total: -0.23 kcal Atomic # 6 Polarization: -3.23 SS G_CDS: -3.07 Total: -6.30 kcal Atomic # 7 Polarization: -53.56 SS G_CDS: 1.08 Total: -52.48 kcal Atomic # 8 Polarization: -4.38 SS G_CDS: 0.06 Total: -4.32 kcal Atomic # 14 Polarization: 22.64 SS G_CDS: -4.16 Total: 18.48 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -34.38 -5.88 -40.26 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000065512467.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 143.496 kcal (2) G-P(sol) polarization free energy of solvation -34.380 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 109.116 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.882 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.261 kcal (6) G-S(sol) free energy of system = (1) + (5) 103.235 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds