Wall clock time and date at job start Wed Apr 15 2020 11:47:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.30275 * 126.28435 * 2 1 4 4 N 1.28670 * 109.38135 * 179.97438 * 3 2 1 5 5 C 1.30275 * 109.38235 * 359.97438 * 4 3 2 6 6 C 1.50695 * 126.28315 * 179.97438 * 5 4 3 7 7 H 1.08999 * 109.76579 * 187.85928 * 6 5 4 8 8 C 1.52782 * 109.76979 * 67.06521 * 6 5 4 9 9 C 1.50599 * 110.85926 * 192.92620 * 8 6 5 10 10 C 1.38983 * 117.61994 * 199.47019 * 9 8 6 11 11 C 1.37905 * 120.57909 * 181.20145 * 10 9 8 12 12 C 1.38269 * 119.82775 * 359.97438 * 11 10 9 13 13 C 1.37952 * 119.71808 * 359.73267 * 12 11 10 14 14 C 1.37671 * 122.85449 * 20.19871 * 9 8 6 15 15 C 1.50808 * 122.35013 * 358.46889 * 14 9 8 16 16 N 1.46682 * 109.67136 * 11.60973 * 15 14 9 17 17 C 1.36936 * 121.33358 * 135.56930 * 16 15 14 18 18 H 1.08000 * 120.00182 * 144.09523 * 17 16 15 19 19 C 1.38816 * 119.99583 * 324.08672 * 17 16 15 20 20 N 1.31623 * 119.99371 * 158.35511 * 19 17 16 21 21 Si 1.86788 * 120.00372 * 338.35141 * 19 17 16 22 22 H 1.48504 * 109.47047 * 85.53602 * 21 19 17 23 23 H 1.48503 * 109.47507 * 205.53788 * 21 19 17 24 24 H 1.48502 * 109.47414 * 325.53691 * 21 19 17 25 25 O 1.34365 * 107.43315 * 359.75874 * 5 4 3 26 26 H 1.08994 * 109.47125 * 90.02512 * 1 2 3 27 27 H 1.09002 * 109.47067 * 330.02716 * 1 2 3 28 28 H 1.09000 * 109.47133 * 210.02496 * 1 2 3 29 29 H 1.08998 * 109.20535 * 313.28789 * 8 6 5 30 30 H 1.09003 * 109.19926 * 72.57661 * 8 6 5 31 31 H 1.07997 * 119.70879 * 1.22733 * 10 9 8 32 32 H 1.08000 * 120.08865 * 179.97438 * 11 10 9 33 33 H 1.07999 * 120.14124 * 179.76175 * 12 11 10 34 34 H 1.08001 * 119.74915 * 180.02562 * 13 12 11 35 35 H 1.08993 * 109.44061 * 251.54004 * 15 14 9 36 36 H 1.09010 * 109.43326 * 131.66133 * 15 14 9 37 37 H 0.97006 * 119.99762 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2780 1.0501 0.0000 4 7 3.5091 0.6760 0.0005 5 6 3.5654 -0.6255 0.0015 6 6 4.8176 -1.4639 0.0018 7 1 4.5586 -2.5134 -0.1377 8 6 5.5590 -1.2849 1.3256 9 6 6.9524 -1.8499 1.2405 10 6 7.6023 -2.1443 2.4333 11 6 8.8888 -2.6409 2.4272 12 6 9.5400 -2.8492 1.2254 13 6 8.8952 -2.5636 0.0397 14 6 7.5985 -2.0671 0.0444 15 6 6.9477 -1.7868 -1.2868 16 7 5.7121 -1.0235 -1.0814 17 6 5.4031 0.0557 -1.8657 18 1 4.3760 0.2493 -2.1375 19 6 6.4101 0.9009 -2.3112 20 7 6.2142 1.6565 -3.3710 21 14 8.0431 0.9662 -1.4066 22 1 8.9329 -0.1094 -1.9132 23 1 8.6831 2.2867 -1.6349 24 1 7.8116 0.7732 0.0475 25 8 2.3021 -1.0831 0.0069 26 1 -0.3633 -0.0005 -1.0276 27 1 -0.3633 0.8902 0.5134 28 1 -0.3633 -0.8898 0.5142 29 1 5.6168 -0.2228 1.5635 30 1 5.0114 -1.7990 2.1155 31 1 7.0951 -1.9831 3.3730 32 1 9.3865 -2.8666 3.3588 33 1 10.5489 -3.2343 1.2149 34 1 9.4031 -2.7265 -0.8993 35 1 6.7139 -2.7292 -1.7819 36 1 7.6310 -1.2099 -1.9103 37 1 6.9180 2.2469 -3.6825 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000065512467.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:47:26 Heat of formation + Delta-G solvation = 76.374693 kcal Electronic energy + Delta-G solvation = -22731.183471 eV Core-core repulsion = 19475.566552 eV Total energy + Delta-G solvation = -3255.616919 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 285.122 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -45.14229 -40.95253 -38.08653 -37.08180 -34.89904 -33.90355 -33.31052 -32.10867 -30.77831 -28.52664 -27.42250 -25.76099 -24.70294 -23.44547 -23.04553 -22.81537 -20.63505 -19.17136 -18.55317 -17.95169 -17.58550 -17.09277 -16.33299 -16.23897 -15.80098 -15.54587 -15.38323 -14.97940 -14.62956 -14.16029 -14.11477 -13.96227 -13.83269 -13.56372 -13.41821 -13.31984 -12.97894 -12.77749 -12.70489 -12.53852 -12.22929 -11.96796 -11.87261 -11.68307 -11.55389 -10.69332 -10.42180 -9.66813 -9.43999 -8.96986 -8.22225 -5.62412 0.22379 0.46964 0.48021 1.22238 1.28048 1.37107 1.49408 1.51832 2.36621 2.84959 2.92891 3.01852 3.12388 3.64900 3.76028 3.84676 3.96522 4.02371 4.14995 4.26643 4.32161 4.47588 4.48172 4.55890 4.59233 4.63773 4.72510 4.78894 4.79620 4.81543 4.97559 5.09479 5.13770 5.22163 5.56266 5.61794 5.73230 5.83263 6.08081 6.15323 6.76751 7.44201 7.47958 7.87666 8.97381 Molecular weight = 285.12amu Principal moments of inertia in cm(-1) A = 0.016304 B = 0.007444 C = 0.005599 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1716.946758 B = 3760.551587 C = 4999.529862 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.049 4.049 2 C 0.156 3.844 3 N -0.340 5.340 4 N -0.283 5.283 5 C 0.173 3.827 6 C 0.262 3.738 7 H 0.099 0.901 8 C -0.082 4.082 9 C -0.080 4.080 10 C -0.124 4.124 11 C -0.121 4.121 12 C -0.122 4.122 13 C -0.134 4.134 14 C -0.112 4.112 15 C 0.166 3.834 16 N -0.609 5.609 17 C -0.227 4.227 18 H 0.040 0.960 19 C -0.014 4.014 20 N -0.949 5.949 21 Si 0.935 3.065 22 H -0.255 1.255 23 H -0.317 1.317 24 H -0.268 1.268 25 O -0.232 6.232 26 H 0.111 0.889 27 H 0.119 0.881 28 H 0.121 0.879 29 H 0.059 0.941 30 H 0.106 0.894 31 H 0.142 0.858 32 H 0.154 0.846 33 H 0.151 0.849 34 H 0.128 0.872 35 H 0.067 0.933 36 H 0.065 0.935 37 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.462 -12.704 12.799 18.201 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.055 4.055 3 N -0.187 5.187 4 N -0.127 5.127 5 C -0.040 4.040 6 C 0.155 3.845 7 H 0.117 0.883 8 C -0.122 4.122 9 C -0.080 4.080 10 C -0.142 4.142 11 C -0.139 4.139 12 C -0.139 4.139 13 C -0.152 4.152 14 C -0.113 4.113 15 C 0.043 3.957 16 N -0.336 5.336 17 C -0.356 4.356 18 H 0.058 0.942 19 C -0.210 4.210 20 N -0.593 5.593 21 Si 0.764 3.236 22 H -0.181 1.181 23 H -0.246 1.246 24 H -0.193 1.193 25 O -0.112 6.112 26 H 0.130 0.870 27 H 0.138 0.862 28 H 0.139 0.861 29 H 0.077 0.923 30 H 0.124 0.876 31 H 0.160 0.840 32 H 0.172 0.828 33 H 0.169 0.831 34 H 0.146 0.854 35 H 0.084 0.916 36 H 0.083 0.917 37 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -2.069 -11.331 12.684 17.133 hybrid contribution 0.381 -0.180 -0.367 0.559 sum -1.688 -11.511 12.318 16.943 Atomic orbital electron populations 1.20679 0.75905 1.07481 1.06605 1.29198 0.99551 0.79043 0.97694 1.74364 0.96720 1.27801 1.19791 1.74522 1.11692 1.10748 1.15772 1.27851 0.85232 0.91348 0.99556 1.19176 0.80908 0.94323 0.90091 0.88301 1.20852 0.93386 1.01082 0.96850 1.19453 0.95783 0.99423 0.93330 1.21408 0.96055 0.99623 0.97127 1.21405 0.94425 0.98939 0.99136 1.21394 1.00869 0.99838 0.91834 1.21297 0.93783 1.00151 0.99962 1.20275 0.95696 1.00053 0.95324 1.20285 0.86525 0.95706 0.93182 1.44374 1.21974 1.32628 1.34640 1.18278 0.93375 1.02222 1.21756 0.94203 1.25913 1.01637 0.95985 0.97447 1.69952 1.35486 1.29718 1.24157 0.86133 0.81150 0.75542 0.80787 1.18110 1.24557 1.19257 1.84719 1.17190 1.38786 1.70481 0.87025 0.86235 0.86088 0.92286 0.87580 0.84031 0.82802 0.83106 0.85414 0.91583 0.91677 0.92911 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 -0.88 10.51 71.24 0.75 -0.13 16 2 C 0.16 5.28 8.48 88.34 0.75 6.03 16 3 N -0.34 -15.00 12.22 -165.50 -2.02 -17.02 16 4 N -0.28 -14.08 10.33 -165.50 -1.71 -15.79 16 5 C 0.17 7.46 6.11 88.34 0.54 8.00 16 6 C 0.26 10.47 3.40 44.03 0.15 10.62 16 7 H 0.10 3.41 8.14 -2.39 -0.02 3.39 16 8 C -0.08 -2.88 5.20 29.74 0.15 -2.73 16 9 C -0.08 -2.69 5.76 -19.85 -0.11 -2.81 16 10 C -0.12 -3.31 9.59 22.37 0.21 -3.09 16 11 C -0.12 -2.76 10.04 22.20 0.22 -2.54 16 12 C -0.12 -2.94 10.05 22.21 0.22 -2.72 16 13 C -0.13 -4.07 9.62 22.35 0.22 -3.85 16 14 C -0.11 -4.07 4.62 -19.82 -0.09 -4.16 16 15 C 0.17 7.00 5.14 85.63 0.44 7.44 16 16 N -0.61 -29.23 2.57 -684.52 -1.76 -30.99 16 17 C -0.23 -13.31 8.33 84.03 0.70 -12.61 16 18 H 0.04 2.66 6.72 -2.91 -0.02 2.64 16 19 C -0.01 -0.83 5.27 84.86 0.45 -0.38 16 20 N -0.95 -62.11 13.97 21.65 0.30 -61.81 16 21 Si 0.93 48.84 24.47 68.60 1.68 50.52 16 22 H -0.25 -12.00 6.26 99.48 0.62 -11.38 16 23 H -0.32 -17.08 7.11 99.48 0.71 -16.37 16 24 H -0.27 -14.04 7.04 99.48 0.70 -13.34 16 25 O -0.23 -8.54 10.87 -3.70 -0.04 -8.58 16 26 H 0.11 1.70 8.14 -2.39 -0.02 1.68 16 27 H 0.12 1.75 8.14 -2.39 -0.02 1.73 16 28 H 0.12 1.38 8.14 -2.39 -0.02 1.36 16 29 H 0.06 2.41 8.07 -2.39 -0.02 2.39 16 30 H 0.11 2.86 8.11 -2.39 -0.02 2.84 16 31 H 0.14 2.99 8.05 -2.91 -0.02 2.96 16 32 H 0.15 2.37 8.06 -2.91 -0.02 2.34 16 33 H 0.15 2.61 8.06 -2.91 -0.02 2.59 16 34 H 0.13 3.56 8.05 -2.91 -0.02 3.53 16 35 H 0.07 2.51 8.14 -2.39 -0.02 2.49 16 36 H 0.07 3.03 3.75 -2.38 -0.01 3.02 16 37 H 0.26 16.32 8.31 -92.70 -0.77 15.54 16 Total: -1.00 -81.21 304.84 2.05 -79.16 By element: Atomic # 1 Polarization: 6.43 SS G_CDS: 1.00 Total: 7.43 kcal Atomic # 6 Polarization: -7.52 SS G_CDS: 4.60 Total: -2.92 kcal Atomic # 7 Polarization: -120.42 SS G_CDS: -5.19 Total: -125.61 kcal Atomic # 8 Polarization: -8.54 SS G_CDS: -0.04 Total: -8.58 kcal Atomic # 14 Polarization: 48.84 SS G_CDS: 1.68 Total: 50.52 kcal Total: -81.21 2.05 -79.16 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000065512467.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 155.534 kcal (2) G-P(sol) polarization free energy of solvation -81.209 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.326 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.049 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.159 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.375 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds