Wall clock time and date at job start Wed Apr 15 2020 11:47:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86795 * 120.00227 * 2 1 4 4 H 1.48494 * 109.47352 * 239.99761 * 3 2 1 5 5 H 1.48502 * 109.46775 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47179 * 119.99475 * 3 2 1 7 7 C 1.38815 * 119.99862 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99827 * 180.02562 * 7 2 1 9 9 N 1.36940 * 120.00153 * 0.02562 * 7 2 1 10 10 C 1.46496 * 119.99844 * 179.97438 * 9 7 2 11 11 C 1.53000 * 109.46990 * 180.02562 * 10 9 7 12 12 C 1.53006 * 109.47212 * 180.02562 * 11 10 9 13 13 N 1.46496 * 109.47242 * 179.97438 * 12 11 10 14 14 C 1.34772 * 120.00214 * 179.97438 * 13 12 11 15 15 O 1.21281 * 119.99940 * 359.97438 * 14 13 12 16 16 C 1.50703 * 120.00069 * 180.02562 * 14 13 12 17 17 N 1.46506 * 109.46877 * 179.97438 * 16 14 13 18 18 C 1.36370 * 125.96582 * 269.68889 * 17 16 14 19 19 O 1.35627 * 125.98599 * 0.03646 * 18 17 16 20 20 N 1.30902 * 108.02387 * 179.89190 * 18 17 16 21 21 N 1.40109 * 107.94108 * 0.36863 * 20 18 17 22 22 C 1.30908 * 107.94040 * 359.76947 * 21 20 18 23 23 O 1.35631 * 125.98942 * 179.97438 * 22 21 20 24 24 H 0.97000 * 120.00392 * 0.02562 * 1 2 3 25 25 H 0.96993 * 120.00001 * 0.02562 * 9 7 2 26 26 H 1.09008 * 109.47210 * 60.00205 * 10 9 7 27 27 H 1.09003 * 109.47718 * 299.99890 * 10 9 7 28 28 H 1.08997 * 109.47467 * 60.00171 * 11 10 9 29 29 H 1.09000 * 109.46955 * 299.99936 * 11 10 9 30 30 H 1.08997 * 109.47040 * 59.99573 * 12 11 10 31 31 H 1.09000 * 109.46833 * 299.99674 * 12 11 10 32 32 H 0.97000 * 119.99972 * 359.97438 * 13 12 11 33 33 H 1.09000 * 109.46978 * 60.00374 * 16 14 13 34 34 H 1.09000 * 109.46976 * 299.99619 * 16 14 13 35 35 H 0.96698 * 114.00049 * 90.00044 * 19 18 17 36 36 H 0.96700 * 113.99434 * 270.02085 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1040 1.6963 -1.2124 5 1 1.2852 2.7464 -0.0006 6 1 3.1039 1.6964 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0010 9 7 1.3255 -2.3881 0.0005 10 6 2.0580 -3.6568 0.0005 11 6 1.0638 -4.8197 -0.0001 12 6 1.8288 -6.1448 0.0005 13 7 0.8769 -7.2583 0.0005 14 6 1.3261 -8.5289 0.0005 15 8 2.5185 -8.7506 0.0001 16 6 0.3468 -9.6744 0.0000 17 7 1.0793 -10.9432 -0.0005 18 6 1.4747 -11.6393 -1.1045 19 8 1.2592 -11.2779 -2.3939 20 7 2.1013 -12.7157 -0.7017 21 7 2.1017 -12.7160 0.6994 22 6 1.4796 -11.6372 1.1030 23 8 1.2696 -11.2737 2.3927 24 1 -0.4851 0.8400 -0.0004 25 1 0.3556 -2.3881 -0.0002 26 1 2.6847 -3.7146 0.8906 27 1 2.6847 -3.7146 -0.8894 28 1 0.4375 -4.7619 -0.8903 29 1 0.4368 -4.7622 0.8897 30 1 2.4549 -6.2024 0.8909 31 1 2.4561 -6.2026 -0.8890 32 1 -0.0768 -7.0811 0.0005 33 1 -0.2795 -9.6165 -0.8903 34 1 -0.2802 -9.6168 0.8897 35 1 1.9620 -10.7319 -2.7720 36 1 0.4435 -11.6098 2.7665 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001174706522.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:47:10 Heat of formation + Delta-G solvation = -8.608851 kcal Electronic energy + Delta-G solvation = -21542.760169 eV Core-core repulsion = 17872.608824 eV Total energy + Delta-G solvation = -3670.151345 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 285.127 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -42.68267 -39.98297 -38.56860 -37.47280 -36.32321 -34.70360 -34.56697 -32.17921 -30.05634 -29.93885 -28.33452 -25.22820 -23.16773 -22.92200 -22.33590 -21.47957 -20.87339 -19.27513 -19.13977 -17.97114 -17.32031 -17.04776 -16.59226 -16.07976 -15.93377 -15.66476 -14.91448 -14.70317 -14.34758 -13.80125 -13.36479 -13.32237 -13.24069 -13.12893 -12.79836 -12.49812 -11.84601 -11.74328 -11.17021 -11.02010 -11.00517 -10.92277 -10.84998 -10.73191 -10.20354 -10.03189 -9.78503 -9.77596 -9.40638 -8.95238 -7.02296 -5.84646 -3.14114 1.05338 1.33483 1.86558 2.06399 2.68009 2.86730 3.36288 3.39740 3.44106 3.45106 3.92306 4.14399 4.34517 4.51784 4.81400 4.81737 4.93265 5.11962 5.26311 5.43870 5.49403 5.66261 5.74714 5.88422 6.03911 6.13013 6.19465 6.62168 6.66032 6.70177 6.87645 7.05206 7.51895 7.62704 7.71031 8.34229 9.45464 10.01230 10.35779 11.38217 Molecular weight = 285.13amu Principal moments of inertia in cm(-1) A = 0.043005 B = 0.002349 C = 0.002313 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 650.937401 B =11919.346017 C =12102.686883 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.013 4.013 3 Si 0.910 3.090 4 H -0.285 1.285 5 H -0.290 1.290 6 H -0.285 1.285 7 C -0.243 4.243 8 H 0.071 0.929 9 N -0.734 5.734 10 C 0.156 3.844 11 C -0.138 4.138 12 C 0.122 3.878 13 N -0.718 5.718 14 C 0.494 3.506 15 O -0.526 6.526 16 C 0.081 3.919 17 N -0.498 5.498 18 C 0.417 3.583 19 O -0.438 6.438 20 N -0.294 5.294 21 N -0.295 5.295 22 C 0.417 3.583 23 O -0.432 6.432 24 H 0.256 0.744 25 H 0.384 0.616 26 H 0.022 0.978 27 H 0.022 0.978 28 H 0.070 0.930 29 H 0.070 0.930 30 H 0.071 0.929 31 H 0.071 0.929 32 H 0.404 0.596 33 H 0.132 0.868 34 H 0.127 0.873 35 H 0.416 0.584 36 H 0.411 0.589 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.512 -22.428 -0.028 22.878 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.209 4.209 3 Si 0.740 3.260 4 H -0.212 1.212 5 H -0.216 1.216 6 H -0.212 1.212 7 C -0.374 4.374 8 H 0.089 0.911 9 N -0.378 5.378 10 C 0.028 3.972 11 C -0.176 4.176 12 C -0.001 4.001 13 N -0.370 5.370 14 C 0.277 3.723 15 O -0.402 6.402 16 C -0.046 4.046 17 N -0.218 5.218 18 C 0.107 3.893 19 O -0.239 6.239 20 N -0.137 5.137 21 N -0.139 5.139 22 C 0.107 3.893 23 O -0.232 6.232 24 H 0.066 0.934 25 H 0.217 0.783 26 H 0.040 0.960 27 H 0.039 0.961 28 H 0.089 0.911 29 H 0.089 0.911 30 H 0.090 0.910 31 H 0.089 0.911 32 H 0.238 0.762 33 H 0.149 0.851 34 H 0.145 0.855 35 H 0.275 0.725 36 H 0.269 0.731 Dipole moment (debyes) X Y Z Total from point charges -2.695 -23.830 -0.027 23.981 hybrid contribution -1.189 2.661 0.029 2.915 sum -3.884 -21.168 0.003 21.522 Atomic orbital electron populations 1.69643 1.05159 1.25911 1.57611 1.24758 0.95570 0.97811 1.02803 0.86231 0.78524 0.83283 0.77942 1.21181 1.21619 1.21171 1.19193 0.91084 0.84083 1.43033 0.91127 1.42314 1.05838 0.99949 1.89692 1.20512 0.93218 0.85172 0.98285 1.21955 0.99634 0.93132 1.02859 1.21448 0.91585 0.84288 1.02795 1.45991 1.11177 1.05342 1.74454 1.20576 0.89789 0.84320 0.77607 1.90809 1.16268 1.84453 1.48653 1.21745 0.94149 0.80896 1.07850 1.46603 1.48031 1.20301 1.06897 1.21278 0.96520 0.90013 0.81532 1.84888 1.49637 1.72735 1.16603 1.78374 1.17736 1.16681 1.00924 1.78371 1.19937 1.14698 1.00895 1.21262 0.96993 0.89545 0.81455 1.85032 1.46060 1.75541 1.16542 0.93388 0.78295 0.96019 0.96056 0.91144 0.91147 0.91032 0.91073 0.76156 0.85054 0.85463 0.72479 0.73114 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.66 13.06 55.49 0.72 -26.94 16 2 C -0.01 -0.38 5.50 -17.43 -0.10 -0.48 16 3 Si 0.91 22.04 29.55 -169.99 -5.02 17.02 16 4 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 5 H -0.29 -7.07 7.11 56.52 0.40 -6.66 16 6 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 7 C -0.24 -6.69 9.99 -15.06 -0.15 -6.84 16 8 H 0.07 1.89 7.83 -52.49 -0.41 1.48 16 9 N -0.73 -17.95 5.60 -59.91 -0.34 -18.29 16 10 C 0.16 2.93 6.26 -4.04 -0.03 2.90 16 11 C -0.14 -1.84 5.44 -26.73 -0.15 -1.98 16 12 C 0.12 1.40 5.67 -4.04 -0.02 1.37 16 13 N -0.72 -5.94 5.56 -60.30 -0.33 -6.28 16 14 C 0.49 4.62 7.90 -10.99 -0.09 4.53 16 15 O -0.53 -7.56 16.43 5.56 0.09 -7.47 16 16 C 0.08 0.44 6.49 -5.19 -0.03 0.41 16 17 N -0.50 -4.45 2.25 -121.34 -0.27 -4.72 16 18 C 0.42 4.32 9.15 -88.82 -0.81 3.50 16 19 O -0.44 -3.25 13.57 -18.58 -0.25 -3.50 16 20 N -0.29 -3.91 12.72 29.65 0.38 -3.53 16 21 N -0.30 -3.93 12.72 29.66 0.38 -3.56 16 22 C 0.42 4.32 9.15 -88.81 -0.81 3.50 16 23 O -0.43 -3.19 13.58 -18.59 -0.25 -3.44 16 24 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 25 H 0.38 9.72 7.67 -40.82 -0.31 9.41 16 26 H 0.02 0.42 8.14 -51.92 -0.42 -0.01 16 27 H 0.02 0.41 8.14 -51.93 -0.42 -0.02 16 28 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 29 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 30 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 31 H 0.07 0.87 8.14 -51.93 -0.42 0.44 16 32 H 0.40 2.11 8.47 -40.82 -0.35 1.76 16 33 H 0.13 0.37 8.14 -51.93 -0.42 -0.06 16 34 H 0.13 0.29 8.14 -51.93 -0.42 -0.14 16 35 H 0.42 1.52 9.06 45.56 0.41 1.93 16 36 H 0.41 0.41 9.06 45.56 0.41 0.82 16 LS Contribution 327.46 15.07 4.93 4.93 Total: -1.00 -39.30 327.46 -4.91 -44.21 By element: Atomic # 1 Polarization: 7.41 SS G_CDS: -2.76 Total: 4.64 kcal Atomic # 6 Polarization: 9.10 SS G_CDS: -2.19 Total: 6.92 kcal Atomic # 7 Polarization: -63.85 SS G_CDS: 0.54 Total: -63.32 kcal Atomic # 8 Polarization: -13.99 SS G_CDS: -0.41 Total: -14.41 kcal Atomic # 14 Polarization: 22.04 SS G_CDS: -5.02 Total: 17.02 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -39.30 -4.91 -44.21 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001174706522.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.600 kcal (2) G-P(sol) polarization free energy of solvation -39.295 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.695 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.914 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.209 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.609 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds