Wall clock time and date at job start Wed Apr 15 2020 11:47:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86795 * 120.00227 * 2 1 4 4 H 1.48494 * 109.47352 * 239.99761 * 3 2 1 5 5 H 1.48502 * 109.46775 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47179 * 119.99475 * 3 2 1 7 7 C 1.38815 * 119.99862 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99827 * 180.02562 * 7 2 1 9 9 N 1.36940 * 120.00153 * 0.02562 * 7 2 1 10 10 C 1.46496 * 119.99844 * 179.97438 * 9 7 2 11 11 C 1.53000 * 109.46990 * 180.02562 * 10 9 7 12 12 C 1.53006 * 109.47212 * 180.02562 * 11 10 9 13 13 N 1.46496 * 109.47242 * 179.97438 * 12 11 10 14 14 C 1.34772 * 120.00214 * 179.97438 * 13 12 11 15 15 O 1.21281 * 119.99940 * 359.97438 * 14 13 12 16 16 C 1.50703 * 120.00069 * 180.02562 * 14 13 12 17 17 N 1.46506 * 109.46877 * 179.97438 * 16 14 13 18 18 C 1.36370 * 125.96582 * 269.68889 * 17 16 14 19 19 O 1.35627 * 125.98599 * 0.03646 * 18 17 16 20 20 N 1.30902 * 108.02387 * 179.89190 * 18 17 16 21 21 N 1.40109 * 107.94108 * 0.36863 * 20 18 17 22 22 C 1.30908 * 107.94040 * 359.76947 * 21 20 18 23 23 O 1.35631 * 125.98942 * 179.97438 * 22 21 20 24 24 H 0.97000 * 120.00392 * 0.02562 * 1 2 3 25 25 H 0.96993 * 120.00001 * 0.02562 * 9 7 2 26 26 H 1.09008 * 109.47210 * 60.00205 * 10 9 7 27 27 H 1.09003 * 109.47718 * 299.99890 * 10 9 7 28 28 H 1.08997 * 109.47467 * 60.00171 * 11 10 9 29 29 H 1.09000 * 109.46955 * 299.99936 * 11 10 9 30 30 H 1.08997 * 109.47040 * 59.99573 * 12 11 10 31 31 H 1.09000 * 109.46833 * 299.99674 * 12 11 10 32 32 H 0.97000 * 119.99972 * 359.97438 * 13 12 11 33 33 H 1.09000 * 109.46978 * 60.00374 * 16 14 13 34 34 H 1.09000 * 109.46976 * 299.99619 * 16 14 13 35 35 H 0.96698 * 114.00049 * 90.00044 * 19 18 17 36 36 H 0.96700 * 113.99434 * 270.02085 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1040 1.6963 -1.2124 5 1 1.2852 2.7464 -0.0006 6 1 3.1039 1.6964 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0010 9 7 1.3255 -2.3881 0.0005 10 6 2.0580 -3.6568 0.0005 11 6 1.0638 -4.8197 -0.0001 12 6 1.8288 -6.1448 0.0005 13 7 0.8769 -7.2583 0.0005 14 6 1.3261 -8.5289 0.0005 15 8 2.5185 -8.7506 0.0001 16 6 0.3468 -9.6744 0.0000 17 7 1.0793 -10.9432 -0.0005 18 6 1.4747 -11.6393 -1.1045 19 8 1.2592 -11.2779 -2.3939 20 7 2.1013 -12.7157 -0.7017 21 7 2.1017 -12.7160 0.6994 22 6 1.4796 -11.6372 1.1030 23 8 1.2696 -11.2737 2.3927 24 1 -0.4851 0.8400 -0.0004 25 1 0.3556 -2.3881 -0.0002 26 1 2.6847 -3.7146 0.8906 27 1 2.6847 -3.7146 -0.8894 28 1 0.4375 -4.7619 -0.8903 29 1 0.4368 -4.7622 0.8897 30 1 2.4549 -6.2024 0.8909 31 1 2.4561 -6.2026 -0.8890 32 1 -0.0768 -7.0811 0.0005 33 1 -0.2795 -9.6165 -0.8903 34 1 -0.2802 -9.6168 0.8897 35 1 1.9620 -10.7319 -2.7720 36 1 0.4435 -11.6098 2.7665 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001174706522.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:47:09 Heat of formation + Delta-G solvation = 52.079643 kcal Electronic energy + Delta-G solvation = -21540.128519 eV Core-core repulsion = 17872.608824 eV Total energy + Delta-G solvation = -3667.519694 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 285.127 amu Computer time = 1.78 seconds Orbital eigenvalues (eV) -40.64085 -40.28689 -39.35644 -37.14948 -36.92318 -35.74180 -35.59706 -33.32443 -32.51462 -29.31553 -27.52714 -27.37196 -25.50618 -23.41703 -21.91330 -21.61105 -21.07005 -20.62783 -19.03284 -18.09694 -17.91419 -17.75293 -17.31719 -17.16041 -16.93368 -16.25763 -15.95747 -15.39586 -15.16760 -14.85431 -14.76457 -14.48092 -14.39269 -14.21559 -13.92439 -13.49771 -12.81497 -12.73499 -12.51729 -12.40115 -12.36056 -12.00320 -11.90713 -11.38087 -11.34771 -10.97275 -10.76654 -10.15601 -9.94385 -9.24418 -8.58113 -7.96487 -3.19734 -1.72608 0.52646 0.72994 1.18648 1.62843 1.88582 1.98431 2.08112 2.39833 2.65393 2.86963 3.30651 3.38474 3.76399 3.77168 3.77801 3.96244 4.31076 4.37183 4.39691 4.46785 4.59135 4.70526 4.74830 4.85240 4.90956 5.05977 5.11104 5.13104 5.71550 5.87777 6.56279 6.78205 7.06966 7.41846 7.66267 7.76519 8.50149 9.39329 9.81085 Molecular weight = 285.13amu Principal moments of inertia in cm(-1) A = 0.043005 B = 0.002349 C = 0.002313 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 650.937401 B =11919.346017 C =12102.686883 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.085 4.085 3 Si 1.035 2.965 4 H -0.229 1.229 5 H -0.269 1.269 6 H -0.227 1.227 7 C 0.384 3.616 8 H 0.280 0.720 9 N -0.518 5.518 10 C 0.065 3.935 11 C -0.138 4.138 12 C 0.106 3.894 13 N -0.725 5.725 14 C 0.459 3.541 15 O -0.603 6.603 16 C 0.134 3.866 17 N -0.544 5.544 18 C -0.162 4.162 19 O -0.414 6.414 20 N -0.503 5.503 21 N -0.382 5.382 22 C 0.004 3.996 23 O -0.452 6.452 24 H 0.380 0.620 25 H 0.441 0.559 26 H 0.151 0.849 27 H 0.148 0.852 28 H 0.098 0.902 29 H 0.102 0.898 30 H 0.050 0.950 31 H 0.044 0.956 32 H 0.410 0.590 33 H 0.060 0.940 34 H 0.079 0.921 35 H 0.050 0.950 36 H 0.317 0.683 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.446 77.524 4.567 77.786 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.172 5.172 2 C -0.321 4.321 3 Si 0.848 3.152 4 H -0.151 1.151 5 H -0.193 1.193 6 H -0.150 1.150 7 C 0.200 3.800 8 H 0.295 0.705 9 N -0.107 5.107 10 C -0.057 4.057 11 C -0.176 4.176 12 C -0.018 4.018 13 N -0.383 5.383 14 C 0.244 3.756 15 O -0.482 6.482 16 C -0.003 4.003 17 N -0.283 5.283 18 C -0.413 4.413 19 O -0.239 6.239 20 N -0.378 5.378 21 N -0.243 5.243 22 C -0.280 4.280 23 O -0.250 6.250 24 H 0.200 0.800 25 H 0.283 0.717 26 H 0.169 0.831 27 H 0.166 0.834 28 H 0.116 0.884 29 H 0.120 0.880 30 H 0.069 0.931 31 H 0.062 0.938 32 H 0.247 0.753 33 H 0.078 0.922 34 H 0.097 0.903 35 H -0.062 1.062 36 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -3.049 75.657 4.274 75.839 hybrid contribution -1.206 1.777 -0.137 2.152 sum -4.255 77.434 4.137 77.661 Atomic orbital electron populations 1.69671 1.09586 1.42281 0.95678 1.28677 0.97678 1.07140 0.98648 0.84115 0.78571 0.68791 0.83693 1.15109 1.19263 1.14954 1.26875 1.03902 0.81769 0.67470 0.70502 1.47299 1.15615 1.08047 1.39711 1.22942 0.94982 0.77754 1.09988 1.21959 0.98845 0.90598 1.06240 1.21309 0.93105 0.86437 1.00983 1.46665 1.10785 1.04130 1.76758 1.25464 0.91942 0.85697 0.72525 1.90523 1.20723 1.85800 1.51180 1.20796 0.96292 0.83202 1.00041 1.44389 1.62859 1.18740 1.02333 1.20644 1.44358 0.96983 0.79323 1.87399 1.43138 1.69970 1.23345 1.76321 1.40804 1.22120 0.98601 1.75969 1.23086 1.19712 1.05572 1.18610 1.31037 0.98027 0.80352 1.84869 1.42372 1.76221 1.21551 0.79977 0.71701 0.83113 0.83405 0.88390 0.87993 0.93148 0.93790 0.75304 0.92214 0.90332 1.06238 0.82979 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 78. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.55 11.61 13.06 21.65 0.28 11.89 16 2 C -0.08 2.29 5.50 84.86 0.47 2.75 16 3 Si 1.04 -24.28 29.55 68.60 2.03 -22.25 16 4 H -0.23 4.88 7.11 99.48 0.71 5.59 16 5 H -0.27 4.56 7.11 99.48 0.71 5.26 16 6 H -0.23 4.90 7.11 99.48 0.71 5.61 16 7 C 0.38 -12.27 9.99 84.03 0.84 -11.43 16 8 H 0.28 -12.04 7.83 -2.91 -0.02 -12.07 16 9 N -0.52 13.23 5.60 -343.44 -1.92 11.31 16 10 C 0.06 -1.17 6.26 86.38 0.54 -0.63 16 11 C -0.14 0.45 5.44 30.60 0.17 0.62 16 12 C 0.11 2.08 5.67 86.38 0.49 2.57 16 13 N -0.73 -25.24 5.56 -463.07 -2.57 -27.81 16 14 C 0.46 27.56 7.90 87.66 0.69 28.25 16 15 O -0.60 -44.92 16.43 -3.03 -0.05 -44.97 16 16 C 0.13 9.22 6.49 85.63 0.56 9.77 16 17 N -0.54 -49.19 2.25 -759.25 -1.71 -50.90 16 18 C -0.16 -16.38 9.15 179.72 1.65 -14.73 16 19 O -0.41 -40.15 13.57 -89.40 -1.21 -41.37 16 20 N -0.50 -52.77 12.72 -173.66 -2.21 -54.98 16 21 N -0.38 -38.17 12.72 -173.65 -2.21 -40.38 16 22 C 0.00 0.36 9.15 179.71 1.65 2.00 16 23 O -0.45 -35.43 13.58 -89.44 -1.21 -36.64 16 24 H 0.38 -8.17 8.31 -92.71 -0.77 -8.95 16 25 H 0.44 -10.54 7.67 -92.71 -0.71 -11.25 16 26 H 0.15 -3.16 8.14 -2.38 -0.02 -3.18 16 27 H 0.15 -3.01 8.14 -2.39 -0.02 -3.03 16 28 H 0.10 -0.44 8.14 -2.39 -0.02 -0.46 16 29 H 0.10 -0.55 8.14 -2.39 -0.02 -0.57 16 30 H 0.05 1.13 8.14 -2.39 -0.02 1.11 16 31 H 0.04 1.04 8.14 -2.39 -0.02 1.02 16 32 H 0.41 10.36 8.47 -92.71 -0.79 9.58 16 33 H 0.06 4.00 8.14 -2.39 -0.02 3.98 16 34 H 0.08 4.77 8.14 -2.39 -0.02 4.76 16 35 H 0.05 4.79 9.06 -74.06 -0.67 4.12 16 36 H 0.32 21.09 9.06 -74.06 -0.67 20.42 16 Total: -1.00 -249.58 327.46 -5.41 -254.99 By element: Atomic # 1 Polarization: 23.60 SS G_CDS: -1.67 Total: 21.93 kcal Atomic # 6 Polarization: 12.14 SS G_CDS: 7.04 Total: 19.18 kcal Atomic # 7 Polarization: -140.53 SS G_CDS: -10.34 Total: -150.86 kcal Atomic # 8 Polarization: -120.51 SS G_CDS: -2.48 Total: -122.99 kcal Atomic # 14 Polarization: -24.28 SS G_CDS: 2.03 Total: -22.25 kcal Total: -249.58 -5.41 -254.99 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001174706522.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 307.073 kcal (2) G-P(sol) polarization free energy of solvation -249.582 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.491 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.412 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -254.994 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.080 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.78 seconds