Wall clock time and date at job start Wed Apr 15 2020 11:47:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.29733 * 126.20258 * 2 1 4 4 N 1.39444 * 111.43331 * 179.73881 * 3 2 1 5 5 C 1.46501 * 124.94748 * 179.97438 * 4 3 2 6 6 C 1.50699 * 109.46859 * 270.01788 * 5 4 3 7 7 H 1.08000 * 120.00156 * 0.02562 * 6 5 4 8 8 C 1.37877 * 120.00021 * 179.97438 * 6 5 4 9 9 N 1.31512 * 120.00248 * 0.02562 * 8 6 5 10 10 Si 1.86807 * 119.99987 * 180.02562 * 8 6 5 11 11 H 1.48502 * 109.46967 * 89.99996 * 10 8 6 12 12 H 1.48504 * 109.47003 * 210.00088 * 10 8 6 13 13 H 1.48498 * 109.47192 * 330.00374 * 10 8 6 14 14 C 1.34855 * 110.10669 * 359.97438 * 4 3 2 15 15 O 1.21895 * 127.01482 * 179.97438 * 14 4 3 16 16 C 1.47031 * 126.20723 * 179.68576 * 2 1 3 17 17 C 1.38477 * 127.54952 * 0.26226 * 16 2 1 18 18 C 1.46121 * 119.99813 * 350.18584 * 17 16 2 19 19 C 1.40426 * 120.12299 * 314.61117 * 18 17 16 20 20 C 1.36454 * 119.87289 * 179.76064 * 19 18 17 21 21 C 1.39400 * 120.12508 * 0.49377 * 20 19 18 22 22 N 1.38832 * 119.87918 * 179.73610 * 21 20 19 23 23 C 1.39410 * 120.24667 * 359.76131 * 21 20 19 24 24 C 1.36454 * 120.12022 * 359.97438 * 23 21 20 25 25 H 1.08993 * 109.47074 * 26.34907 * 1 2 3 26 26 H 1.08994 * 109.46553 * 146.34784 * 1 2 3 27 27 H 1.08998 * 109.47096 * 266.34560 * 1 2 3 28 28 H 1.08996 * 109.46988 * 30.01744 * 5 4 3 29 29 H 1.09001 * 109.46943 * 150.02525 * 5 4 3 30 30 H 0.96998 * 119.99969 * 179.97438 * 9 8 6 31 31 H 1.08003 * 120.00433 * 170.18543 * 17 16 2 32 32 H 1.07997 * 120.06249 * 359.97429 * 19 18 17 33 33 H 1.08000 * 119.93458 * 180.20457 * 20 19 18 34 34 H 0.96997 * 119.99904 * 180.02562 * 22 21 20 35 35 H 0.97000 * 119.99334 * 0.02562 * 22 21 20 36 36 H 1.07992 * 119.93909 * 179.97438 * 23 21 20 37 37 H 1.08003 * 120.05897 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2732 1.0469 0.0000 4 7 3.6216 0.6914 0.0059 5 6 4.7392 1.6386 0.0069 6 6 5.1271 1.9593 -1.4135 7 1 4.5942 1.5034 -2.2349 8 6 6.1617 2.8354 -1.6646 9 7 6.8104 3.3909 -0.6645 10 14 6.6421 3.2334 -3.4254 11 1 5.8638 4.4066 -3.8977 12 1 8.0928 3.5455 -3.4842 13 1 6.3516 2.0645 -4.2940 14 6 3.7470 -0.6513 0.0106 15 8 4.7844 -1.2914 0.0158 16 6 2.3755 -1.1864 0.0065 17 6 1.9882 -2.5158 0.0088 18 6 0.5859 -2.8679 0.2203 19 6 -0.1492 -2.2495 1.2446 20 6 -1.4598 -2.5785 1.4345 21 6 -2.0663 -3.5340 0.6205 22 7 -3.3985 -3.8689 0.8217 23 6 -1.3398 -4.1550 -0.3945 24 6 -0.0302 -3.8297 -0.5967 25 1 -0.3633 0.9208 -0.4561 26 1 -0.3632 -0.8554 -0.5695 27 1 -0.3633 -0.0655 1.0256 28 1 4.4392 2.5539 0.5171 29 1 5.5901 1.1960 0.5248 30 1 7.5385 4.0070 -0.8411 31 1 2.7225 -3.2926 -0.1458 32 1 0.3209 -1.5124 1.8787 33 1 -2.0270 -2.1012 2.2198 34 1 -3.8221 -4.5338 0.2566 35 1 -3.9056 -3.4379 1.5274 36 1 -1.8145 -4.8948 -1.0219 37 1 0.5318 -4.3117 -1.3830 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000100150843.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:47:09 Heat of formation + Delta-G solvation = 71.191313 kcal Electronic energy + Delta-G solvation = -21307.740461 eV Core-core repulsion = 18051.898774 eV Total energy + Delta-G solvation = -3255.841687 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 285.122 amu Computer time = 1.53 seconds Orbital eigenvalues (eV) -40.55199 -39.58584 -36.51397 -35.63988 -33.73782 -32.44779 -31.64480 -31.06748 -29.08384 -27.87530 -26.40621 -24.34223 -22.94150 -22.43607 -21.47931 -19.32479 -19.00354 -17.52069 -17.16264 -16.59394 -15.97415 -15.45852 -14.88359 -14.81920 -14.51266 -14.24497 -14.09334 -13.80771 -13.50885 -13.44496 -12.88908 -12.71602 -12.37272 -12.29292 -11.83090 -11.45330 -11.36786 -11.19213 -11.03346 -10.80722 -10.67827 -10.50038 -10.13934 -9.79043 -9.17299 -9.15496 -8.92330 -8.46143 -7.78616 -7.35862 -6.07961 -4.13184 0.40636 1.30771 1.57526 3.00623 3.32166 3.36445 3.38498 3.48017 3.50489 3.60808 3.79975 4.37485 4.43951 4.62116 4.71252 4.75313 4.95690 5.15693 5.26662 5.31370 5.46670 5.50542 5.68256 5.79937 5.82973 5.93615 5.95031 6.07456 6.20685 6.32149 6.49452 6.56838 6.72059 7.12168 7.18827 7.30183 7.33722 7.42889 7.87621 8.12203 8.50796 8.71271 8.93558 9.51323 11.00308 Molecular weight = 285.12amu Principal moments of inertia in cm(-1) A = 0.034114 B = 0.003451 C = 0.003416 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 820.587987 B = 8112.595293 C = 8194.351696 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.073 3.927 3 N -0.210 5.210 4 N -0.439 5.439 5 C 0.270 3.730 6 C -0.531 4.531 7 H 0.060 0.940 8 C 0.063 3.937 9 N -0.894 5.894 10 Si 0.904 3.096 11 H -0.278 1.278 12 H -0.284 1.284 13 H -0.273 1.273 14 C 0.518 3.482 15 O -0.511 6.511 16 C -0.216 4.216 17 C 0.051 3.949 18 C -0.147 4.147 19 C -0.027 4.027 20 C -0.210 4.210 21 C 0.232 3.768 22 N -0.872 5.872 23 C -0.208 4.208 24 C -0.038 4.038 25 H 0.074 0.926 26 H 0.082 0.918 27 H 0.081 0.919 28 H 0.048 0.952 29 H 0.052 0.948 30 H 0.266 0.734 31 H 0.139 0.861 32 H 0.130 0.870 33 H 0.124 0.876 34 H 0.398 0.602 35 H 0.399 0.601 36 H 0.121 0.879 37 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.413 -15.122 3.712 27.291 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.115 4.115 3 N -0.019 5.019 4 N -0.257 5.257 5 C 0.153 3.847 6 C -0.570 4.570 7 H 0.078 0.922 8 C -0.140 4.140 9 N -0.533 5.533 10 Si 0.732 3.268 11 H -0.204 1.204 12 H -0.209 1.209 13 H -0.198 1.198 14 C 0.306 3.694 15 O -0.387 6.387 16 C -0.222 4.222 17 C 0.028 3.972 18 C -0.149 4.149 19 C -0.046 4.046 20 C -0.232 4.232 21 C 0.126 3.874 22 N -0.409 5.409 23 C -0.230 4.230 24 C -0.057 4.057 25 H 0.092 0.908 26 H 0.101 0.899 27 H 0.100 0.900 28 H 0.066 0.934 29 H 0.070 0.930 30 H 0.075 0.925 31 H 0.157 0.843 32 H 0.148 0.852 33 H 0.141 0.859 34 H 0.227 0.773 35 H 0.227 0.773 36 H 0.139 0.861 37 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -21.383 -14.100 3.759 25.888 hybrid contribution 0.125 -0.505 -0.954 1.087 sum -21.258 -14.605 2.804 25.944 Atomic orbital electron populations 1.20633 0.86312 1.03547 1.02894 1.23724 0.96335 0.88963 1.02432 1.75782 0.90429 1.25261 1.10426 1.50032 1.02990 1.06494 1.66207 1.19444 0.79976 0.86841 0.98403 1.21384 1.16989 1.26738 0.91852 0.92205 1.24920 0.95651 0.95460 0.97924 1.69926 1.22434 1.30082 1.30858 0.86389 0.77636 0.78710 0.84101 1.20422 1.20929 1.19801 1.18890 0.88766 0.83560 0.78144 1.90826 1.33634 1.64359 1.49926 1.22278 0.95413 0.94156 1.10333 1.22547 0.94031 0.93938 0.86714 1.18706 0.93649 1.01953 1.00639 1.21071 0.93046 0.94990 0.95448 1.20246 0.96089 1.03175 1.03737 1.17996 0.84558 0.92162 0.92712 1.42401 1.09712 1.48217 1.40552 1.20233 0.95471 1.05697 1.01645 1.20841 0.94098 0.93845 0.96897 0.90761 0.89908 0.90025 0.93438 0.93012 0.92479 0.84293 0.85185 0.85851 0.77348 0.77274 0.86078 0.85514 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.91 8.17 36.01 0.29 -0.62 16 2 C 0.07 1.28 7.01 -79.92 -0.56 0.72 16 3 N -0.21 -4.62 12.26 35.01 0.43 -4.19 16 4 N -0.44 -11.11 3.54 -62.56 -0.22 -11.33 16 5 C 0.27 7.70 6.03 -5.19 -0.03 7.67 16 6 C -0.53 -16.04 9.39 -34.44 -0.32 -16.36 16 7 H 0.06 1.84 7.81 -52.49 -0.41 1.43 16 8 C 0.06 1.86 5.46 -17.82 -0.10 1.76 16 9 N -0.89 -27.13 13.29 55.43 0.74 -26.39 16 10 Si 0.90 22.58 29.54 -169.99 -5.02 17.56 16 11 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 12 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 13 H -0.27 -6.80 7.11 56.52 0.40 -6.40 16 14 C 0.52 12.38 8.18 -12.58 -0.10 12.28 16 15 O -0.51 -13.55 17.86 5.01 0.09 -13.46 16 16 C -0.22 -3.90 6.04 -102.60 -0.62 -4.52 16 17 C 0.05 0.70 9.86 -36.33 -0.36 0.35 16 18 C -0.15 -1.58 4.26 -105.09 -0.45 -2.03 16 19 C -0.03 -0.26 5.56 -39.40 -0.22 -0.48 16 20 C -0.21 -1.65 9.82 -39.79 -0.39 -2.04 16 21 C 0.23 1.69 6.76 -83.82 -0.57 1.12 16 22 N -0.87 -3.78 9.04 32.44 0.29 -3.48 16 23 C -0.21 -1.60 9.82 -39.79 -0.39 -1.99 16 24 C -0.04 -0.34 9.75 -39.40 -0.38 -0.72 16 25 H 0.07 0.87 8.14 -51.93 -0.42 0.44 16 26 H 0.08 0.90 6.05 -51.93 -0.31 0.59 16 27 H 0.08 0.80 6.02 -51.93 -0.31 0.49 16 28 H 0.05 1.37 8.14 -51.93 -0.42 0.95 16 29 H 0.05 1.56 8.05 -51.93 -0.42 1.14 16 30 H 0.27 7.54 8.31 -40.82 -0.34 7.20 16 31 H 0.14 1.77 8.06 -52.48 -0.42 1.35 16 32 H 0.13 1.30 6.47 -52.49 -0.34 0.96 16 33 H 0.12 0.75 8.06 -52.49 -0.42 0.32 16 34 H 0.40 1.09 8.83 -40.82 -0.36 0.73 16 35 H 0.40 1.12 8.83 -40.82 -0.36 0.76 16 36 H 0.12 0.70 8.06 -52.49 -0.42 0.28 16 37 H 0.13 0.96 8.06 -52.48 -0.42 0.54 16 LS Contribution 321.84 15.07 4.85 4.85 Total: -1.00 -36.19 321.84 -7.23 -43.42 By element: Atomic # 1 Polarization: 2.09 SS G_CDS: -4.19 Total: -2.10 kcal Atomic # 6 Polarization: -0.67 SS G_CDS: -4.20 Total: -4.87 kcal Atomic # 7 Polarization: -46.64 SS G_CDS: 1.24 Total: -45.40 kcal Atomic # 8 Polarization: -13.55 SS G_CDS: 0.09 Total: -13.46 kcal Atomic # 14 Polarization: 22.58 SS G_CDS: -5.02 Total: 17.56 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -36.19 -7.23 -43.42 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000100150843.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.613 kcal (2) G-P(sol) polarization free energy of solvation -36.193 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.420 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.229 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.422 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.191 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.53 seconds