Wall clock time and date at job start Wed Apr 15 2020 11:47:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.29733 * 126.20258 * 2 1 4 4 N 1.39444 * 111.43331 * 179.73881 * 3 2 1 5 5 C 1.46501 * 124.94748 * 179.97438 * 4 3 2 6 6 C 1.50699 * 109.46859 * 270.01788 * 5 4 3 7 7 H 1.08000 * 120.00156 * 0.02562 * 6 5 4 8 8 C 1.37877 * 120.00021 * 179.97438 * 6 5 4 9 9 N 1.31512 * 120.00248 * 0.02562 * 8 6 5 10 10 Si 1.86807 * 119.99987 * 180.02562 * 8 6 5 11 11 H 1.48502 * 109.46967 * 89.99996 * 10 8 6 12 12 H 1.48504 * 109.47003 * 210.00088 * 10 8 6 13 13 H 1.48498 * 109.47192 * 330.00374 * 10 8 6 14 14 C 1.34855 * 110.10669 * 359.97438 * 4 3 2 15 15 O 1.21895 * 127.01482 * 179.97438 * 14 4 3 16 16 C 1.47031 * 126.20723 * 179.68576 * 2 1 3 17 17 C 1.38477 * 127.54952 * 0.26226 * 16 2 1 18 18 C 1.46121 * 119.99813 * 350.18584 * 17 16 2 19 19 C 1.40426 * 120.12299 * 314.61117 * 18 17 16 20 20 C 1.36454 * 119.87289 * 179.76064 * 19 18 17 21 21 C 1.39400 * 120.12508 * 0.49377 * 20 19 18 22 22 N 1.38832 * 119.87918 * 179.73610 * 21 20 19 23 23 C 1.39410 * 120.24667 * 359.76131 * 21 20 19 24 24 C 1.36454 * 120.12022 * 359.97438 * 23 21 20 25 25 H 1.08993 * 109.47074 * 26.34907 * 1 2 3 26 26 H 1.08994 * 109.46553 * 146.34784 * 1 2 3 27 27 H 1.08998 * 109.47096 * 266.34560 * 1 2 3 28 28 H 1.08996 * 109.46988 * 30.01744 * 5 4 3 29 29 H 1.09001 * 109.46943 * 150.02525 * 5 4 3 30 30 H 0.96998 * 119.99969 * 179.97438 * 9 8 6 31 31 H 1.08003 * 120.00433 * 170.18543 * 17 16 2 32 32 H 1.07997 * 120.06249 * 359.97429 * 19 18 17 33 33 H 1.08000 * 119.93458 * 180.20457 * 20 19 18 34 34 H 0.96997 * 119.99904 * 180.02562 * 22 21 20 35 35 H 0.97000 * 119.99334 * 0.02562 * 22 21 20 36 36 H 1.07992 * 119.93909 * 179.97438 * 23 21 20 37 37 H 1.08003 * 120.05897 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2732 1.0469 0.0000 4 7 3.6216 0.6914 0.0059 5 6 4.7392 1.6386 0.0069 6 6 5.1271 1.9593 -1.4135 7 1 4.5942 1.5034 -2.2349 8 6 6.1617 2.8354 -1.6646 9 7 6.8104 3.3909 -0.6645 10 14 6.6421 3.2334 -3.4254 11 1 5.8638 4.4066 -3.8977 12 1 8.0928 3.5455 -3.4842 13 1 6.3516 2.0645 -4.2940 14 6 3.7470 -0.6513 0.0106 15 8 4.7844 -1.2914 0.0158 16 6 2.3755 -1.1864 0.0065 17 6 1.9882 -2.5158 0.0088 18 6 0.5859 -2.8679 0.2203 19 6 -0.1492 -2.2495 1.2446 20 6 -1.4598 -2.5785 1.4345 21 6 -2.0663 -3.5340 0.6205 22 7 -3.3985 -3.8689 0.8217 23 6 -1.3398 -4.1550 -0.3945 24 6 -0.0302 -3.8297 -0.5967 25 1 -0.3633 0.9208 -0.4561 26 1 -0.3632 -0.8554 -0.5695 27 1 -0.3633 -0.0655 1.0256 28 1 4.4392 2.5539 0.5171 29 1 5.5901 1.1960 0.5248 30 1 7.5385 4.0070 -0.8411 31 1 2.7225 -3.2926 -0.1458 32 1 0.3209 -1.5124 1.8787 33 1 -2.0270 -2.1012 2.2198 34 1 -3.8221 -4.5338 0.2566 35 1 -3.9056 -3.4379 1.5274 36 1 -1.8145 -4.8948 -1.0219 37 1 0.5318 -4.3117 -1.3830 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000100150843.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:47:08 Heat of formation + Delta-G solvation = 44.190861 kcal Electronic energy + Delta-G solvation = -21308.911289 eV Core-core repulsion = 18051.898774 eV Total energy + Delta-G solvation = -3257.012514 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 285.122 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.03071 -40.38348 -38.18818 -36.59735 -35.55272 -34.02938 -32.64006 -32.12809 -30.58108 -28.93801 -28.14192 -25.86528 -24.10765 -23.59636 -22.50024 -20.84774 -20.41025 -18.85642 -18.16497 -17.74365 -17.49926 -16.68380 -16.63860 -16.37547 -15.97867 -15.43837 -14.92886 -14.84405 -14.50261 -14.39329 -14.21672 -14.06503 -13.89858 -13.73104 -13.23890 -13.13159 -12.76423 -12.70723 -12.59694 -12.40623 -12.14909 -11.98014 -11.69071 -11.41696 -10.78893 -10.62722 -10.42208 -9.83216 -9.37780 -8.33863 -8.20514 -6.51265 -0.78978 0.67435 0.72451 1.31488 1.36082 1.46053 1.59798 1.75150 2.09933 2.33669 2.91936 2.96807 3.04895 3.12174 3.44474 3.87042 4.01086 4.13191 4.21095 4.49861 4.52180 4.64213 4.78111 4.79380 4.84665 4.88279 4.92340 4.96437 5.16289 5.21881 5.37536 5.43608 5.55982 5.56857 5.72228 5.76698 5.85123 5.93012 6.52523 6.61478 6.84433 7.01448 7.05525 7.21542 8.74340 Molecular weight = 285.12amu Principal moments of inertia in cm(-1) A = 0.034114 B = 0.003451 C = 0.003416 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 820.587987 B = 8112.595293 C = 8194.351696 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C 0.125 3.875 3 N -0.280 5.280 4 N -0.460 5.460 5 C 0.287 3.713 6 C -0.557 4.557 7 H 0.046 0.954 8 C 0.012 3.988 9 N -0.924 5.924 10 Si 0.980 3.020 11 H -0.262 1.262 12 H -0.269 1.269 13 H -0.273 1.273 14 C 0.496 3.504 15 O -0.574 6.574 16 C -0.279 4.279 17 C 0.133 3.867 18 C -0.189 4.189 19 C -0.022 4.022 20 C -0.215 4.215 21 C 0.251 3.749 22 N -0.854 5.854 23 C -0.214 4.214 24 C -0.025 4.025 25 H 0.081 0.919 26 H 0.104 0.896 27 H 0.113 0.887 28 H 0.028 0.972 29 H 0.015 0.985 30 H 0.273 0.727 31 H 0.148 0.852 32 H 0.124 0.876 33 H 0.146 0.854 34 H 0.410 0.590 35 H 0.410 0.590 36 H 0.145 0.855 37 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.968 -17.445 2.753 32.237 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.062 4.062 3 N -0.089 5.089 4 N -0.276 5.276 5 C 0.168 3.832 6 C -0.595 4.595 7 H 0.064 0.936 8 C -0.188 4.188 9 N -0.562 5.562 10 Si 0.803 3.197 11 H -0.187 1.187 12 H -0.193 1.193 13 H -0.198 1.198 14 C 0.288 3.712 15 O -0.456 6.456 16 C -0.285 4.285 17 C 0.110 3.890 18 C -0.192 4.192 19 C -0.041 4.041 20 C -0.237 4.237 21 C 0.141 3.859 22 N -0.390 5.390 23 C -0.237 4.237 24 C -0.044 4.044 25 H 0.100 0.900 26 H 0.122 0.878 27 H 0.131 0.869 28 H 0.046 0.954 29 H 0.033 0.967 30 H 0.082 0.918 31 H 0.165 0.835 32 H 0.142 0.858 33 H 0.164 0.836 34 H 0.240 0.760 35 H 0.240 0.760 36 H 0.163 0.837 37 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -26.046 -16.426 2.823 30.922 hybrid contribution 1.044 -0.198 -0.530 1.188 sum -25.001 -16.624 2.293 30.111 Atomic orbital electron populations 1.20930 0.81977 1.04835 1.05264 1.24642 0.98195 0.87616 0.95708 1.75810 0.88656 1.26930 1.17539 1.49786 1.04151 1.06579 1.67035 1.18805 0.80627 0.86512 0.97263 1.21546 1.18052 1.27816 0.92057 0.93574 1.25937 0.95019 0.94706 1.03122 1.70036 1.22681 1.30199 1.33323 0.85243 0.78044 0.78728 0.77731 1.18652 1.19324 1.19810 1.19738 0.90754 0.83217 0.77456 1.90744 1.35794 1.65013 1.54036 1.21876 0.91927 0.95923 1.18746 1.23041 0.96164 0.92100 0.77676 1.18596 0.92127 1.05017 1.03448 1.21072 0.93672 0.94393 0.94925 1.20435 0.95364 1.03451 1.04459 1.18182 0.85463 0.90772 0.91509 1.42503 1.08638 1.47502 1.40368 1.20500 0.94997 1.06135 1.02060 1.20993 0.94822 0.92185 0.96370 0.90029 0.87785 0.86923 0.95397 0.96664 0.91752 0.83498 0.85821 0.83642 0.75977 0.75973 0.83696 0.84218 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.55 8.17 71.24 0.58 -0.97 16 2 C 0.12 4.41 7.01 45.18 0.32 4.73 16 3 N -0.28 -13.17 12.26 -43.15 -0.53 -13.70 16 4 N -0.46 -25.49 3.54 -469.92 -1.66 -27.16 16 5 C 0.29 18.05 6.03 85.63 0.52 18.57 16 6 C -0.56 -36.05 9.39 25.60 0.24 -35.81 16 7 H 0.05 3.03 7.81 -2.91 -0.02 3.00 16 8 C 0.01 0.74 5.46 84.65 0.46 1.20 16 9 N -0.92 -58.57 13.29 21.45 0.28 -58.28 16 10 Si 0.98 47.65 29.54 68.60 2.03 49.68 16 11 H -0.26 -11.98 7.11 99.48 0.71 -11.28 16 12 H -0.27 -12.32 7.11 99.48 0.71 -11.62 16 13 H -0.27 -13.19 7.11 99.48 0.71 -12.49 16 14 C 0.50 25.86 8.18 86.59 0.71 26.57 16 15 O -0.57 -33.49 17.86 -4.97 -0.09 -33.58 16 16 C -0.28 -10.38 6.04 -18.55 -0.11 -10.49 16 17 C 0.13 3.51 9.86 24.37 0.24 3.75 16 18 C -0.19 -3.44 4.26 -20.17 -0.09 -3.53 16 19 C -0.02 -0.34 5.56 22.39 0.12 -0.21 16 20 C -0.21 -2.25 9.82 22.13 0.22 -2.04 16 21 C 0.25 2.20 6.76 38.60 0.26 2.46 16 22 N -0.85 -2.33 9.04 -51.28 -0.46 -2.79 16 23 C -0.21 -2.10 9.82 22.14 0.22 -1.88 16 24 C -0.02 -0.33 9.75 22.39 0.22 -0.11 16 25 H 0.08 1.70 8.14 -2.39 -0.02 1.68 16 26 H 0.10 1.85 6.05 -2.39 -0.01 1.84 16 27 H 0.11 1.80 6.02 -2.39 -0.01 1.79 16 28 H 0.03 1.80 8.14 -2.39 -0.02 1.78 16 29 H 0.02 1.04 8.05 -2.39 -0.02 1.02 16 30 H 0.27 15.95 8.31 -92.71 -0.77 15.18 16 31 H 0.15 3.59 8.06 -2.91 -0.02 3.57 16 32 H 0.12 2.12 6.47 -2.91 -0.02 2.10 16 33 H 0.15 0.93 8.06 -2.91 -0.02 0.90 16 34 H 0.41 -0.20 8.83 -92.71 -0.82 -1.01 16 35 H 0.41 -0.10 8.83 -92.71 -0.82 -0.92 16 36 H 0.15 0.79 8.06 -2.91 -0.02 0.76 16 37 H 0.14 1.51 8.06 -2.91 -0.02 1.48 16 Total: -1.00 -88.76 321.84 2.96 -85.79 By element: Atomic # 1 Polarization: -1.68 SS G_CDS: -0.51 Total: -2.19 kcal Atomic # 6 Polarization: -1.68 SS G_CDS: 3.91 Total: 2.23 kcal Atomic # 7 Polarization: -99.56 SS G_CDS: -2.37 Total: -101.93 kcal Atomic # 8 Polarization: -33.49 SS G_CDS: -0.09 Total: -33.58 kcal Atomic # 14 Polarization: 47.65 SS G_CDS: 2.03 Total: 49.68 kcal Total: -88.76 2.96 -85.79 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000100150843.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.985 kcal (2) G-P(sol) polarization free energy of solvation -88.756 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.228 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.963 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.794 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.191 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds