Wall clock time and date at job start Wed Apr 15 2020 11:47:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 119.99710 * 2 1 4 4 H 1.48503 * 109.46845 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.47399 * 299.99578 * 3 2 1 6 6 H 1.48498 * 109.47295 * 60.00185 * 3 2 1 7 7 C 1.37871 * 120.00217 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00140 * 180.02562 * 7 2 1 9 9 C 1.50706 * 119.99722 * 0.02562 * 7 2 1 10 10 N 1.46904 * 109.46676 * 180.02562 * 9 7 2 11 11 C 1.46894 * 111.00187 * 294.29963 * 10 9 7 12 12 C 1.53237 * 109.34198 * 172.75073 * 11 10 9 13 13 N 1.47073 * 108.52100 * 53.82814 * 12 11 10 14 14 C 1.34783 * 120.88095 * 128.79394 * 13 12 11 15 15 O 1.21278 * 119.99990 * 180.02562 * 14 13 12 16 16 C 1.50701 * 119.99892 * 0.02562 * 14 13 12 17 17 H 1.08998 * 108.70642 * 43.18388 * 16 14 13 18 18 C 1.54535 * 108.76121 * 285.06697 * 16 14 13 19 19 S 1.84199 * 101.40083 * 215.85436 * 18 16 14 20 20 C 1.84065 * 93.96731 * 32.39342 * 19 18 16 21 21 N 1.45920 * 108.75872 * 161.45006 * 16 14 13 22 22 C 1.47077 * 118.24076 * 308.81681 * 13 12 11 23 23 C 1.46896 * 110.99521 * 170.00078 * 10 9 7 24 24 H 0.97000 * 119.99651 * 180.02562 * 1 2 3 25 25 H 1.08996 * 109.46844 * 299.99724 * 9 7 2 26 26 H 1.08994 * 109.47301 * 59.99976 * 9 7 2 27 27 H 1.09004 * 109.49584 * 292.70902 * 11 10 9 28 28 H 1.08998 * 109.49327 * 52.78505 * 11 10 9 29 29 H 1.09002 * 109.62634 * 294.12218 * 12 11 10 30 30 H 1.09000 * 109.63256 * 173.54002 * 12 11 10 31 31 H 1.09004 * 111.03409 * 333.87867 * 18 16 14 32 32 H 1.08994 * 111.04105 * 97.82186 * 18 16 14 33 33 H 1.09001 * 110.77288 * 208.21345 * 20 19 18 34 34 H 1.08994 * 110.77943 * 84.78232 * 20 19 18 35 35 H 1.00894 * 111.00399 * 352.92517 * 21 16 14 36 36 H 1.09003 * 109.63007 * 291.47628 * 22 13 12 37 37 H 1.08998 * 109.63222 * 170.89400 * 22 13 12 38 38 H 1.09002 * 109.49808 * 307.20791 * 23 10 9 39 39 H 1.08997 * 109.50102 * 67.26448 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8904 2.3965 -1.2126 6 1 1.8904 2.3965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2510 -2.4991 0.0005 10 7 2.2057 -3.6156 0.0018 11 6 2.9777 -3.6496 -1.2475 12 6 4.0799 -4.7082 -1.1344 13 7 3.4622 -5.9864 -0.7501 14 6 3.7128 -7.1129 -1.4466 15 8 3.1944 -8.1582 -1.1159 16 6 4.6369 -7.0733 -2.6363 17 1 5.5056 -6.4651 -2.3841 18 6 3.8963 -6.4098 -3.8192 19 16 4.5517 -7.3733 -5.2457 20 6 4.7309 -8.9284 -4.2775 21 7 5.0838 -8.4312 -2.9287 22 6 2.5636 -6.0029 0.4141 23 6 1.5211 -4.8933 0.2399 24 1 -0.4850 -0.8401 0.0004 25 1 0.6241 -2.5566 0.8903 26 1 0.6247 -2.5571 -0.8896 27 1 2.3165 -3.9002 -2.0771 28 1 3.4282 -2.6728 -1.4233 29 1 4.8006 -4.4066 -0.3743 30 1 4.5818 -4.8184 -2.0956 31 1 2.8175 -6.5350 -3.7251 32 1 4.1603 -5.3558 -3.9045 33 1 5.5318 -9.5465 -4.6834 34 1 3.7906 -9.4790 -4.2528 35 1 4.7771 -9.0746 -2.2146 36 1 3.1385 -5.8258 1.3230 37 1 2.0629 -6.9691 0.4766 38 1 0.9152 -4.8186 1.1430 39 1 0.8797 -5.1264 -0.6100 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000134822437.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:47:14 Heat of formation + Delta-G solvation = -34.666227 kcal Electronic energy + Delta-G solvation = -21088.454399 eV Core-core repulsion = 17963.466336 eV Total energy + Delta-G solvation = -3124.988063 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 285.125 amu Computer time = 2.06 seconds Orbital eigenvalues (eV) -41.74714 -39.43029 -37.29453 -36.32603 -34.61903 -32.66161 -31.36886 -29.79518 -27.68831 -26.92255 -24.92812 -24.56638 -23.43924 -21.96383 -20.15939 -19.07987 -18.77217 -18.40526 -17.13864 -16.93107 -16.34488 -16.16225 -15.99587 -15.78092 -15.63075 -15.39307 -15.03158 -14.92992 -14.40863 -14.10089 -13.79015 -13.42690 -13.36311 -13.29230 -13.08630 -13.02008 -12.54577 -12.39822 -12.21601 -12.11654 -11.87400 -11.70891 -10.98236 -10.83208 -10.58211 -9.94702 -9.85058 -9.20371 -8.95777 -8.67232 -6.38846 0.55647 0.89770 1.30486 1.56848 1.65242 1.70089 1.81562 2.56808 2.74597 3.02187 3.12527 3.17543 3.18731 3.70654 3.84980 3.91235 4.08222 4.10289 4.11935 4.27587 4.31085 4.31371 4.42020 4.47551 4.60778 4.70561 4.76548 4.82090 4.96752 5.02800 5.23299 5.46827 5.72158 5.85474 5.92321 6.18357 6.30073 6.39429 6.58364 6.79299 7.42376 8.71809 Molecular weight = 285.13amu Principal moments of inertia in cm(-1) A = 0.024982 B = 0.003949 C = 0.003610 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1120.525819 B = 7088.275303 C = 7754.324933 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.942 5.942 2 C -0.037 4.037 3 Si 1.125 2.875 4 H -0.264 1.264 5 H -0.282 1.282 6 H -0.283 1.283 7 C -0.594 4.594 8 H 0.064 0.936 9 C 0.194 3.806 10 N -0.532 5.532 11 C 0.049 3.951 12 C 0.115 3.885 13 N -0.600 5.600 14 C 0.501 3.499 15 O -0.575 6.575 16 C 0.081 3.919 17 H 0.137 0.863 18 C -0.071 4.071 19 S -0.291 6.291 20 C 0.120 3.880 21 N -0.682 5.682 22 C 0.127 3.873 23 C 0.042 3.958 24 H 0.253 0.747 25 H -0.001 1.001 26 H -0.045 1.045 27 H 0.018 0.982 28 H 0.088 0.912 29 H 0.093 0.907 30 H 0.117 0.883 31 H 0.084 0.916 32 H 0.142 0.858 33 H 0.138 0.862 34 H 0.073 0.927 35 H 0.363 0.637 36 H 0.086 0.914 37 H 0.092 0.908 38 H 0.081 0.919 39 H 0.016 0.984 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.756 -14.896 -6.362 20.014 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.235 4.235 3 Si 0.946 3.054 4 H -0.188 1.188 5 H -0.208 1.208 6 H -0.209 1.209 7 C -0.632 4.632 8 H 0.082 0.918 9 C 0.067 3.933 10 N -0.257 5.257 11 C -0.080 4.080 12 C -0.007 4.007 13 N -0.331 5.331 14 C 0.288 3.712 15 O -0.455 6.455 16 C -0.034 4.034 17 H 0.155 0.845 18 C -0.221 4.221 19 S -0.066 6.066 20 C -0.119 4.119 21 N -0.320 5.320 22 C 0.004 3.996 23 C -0.087 4.087 24 H 0.062 0.938 25 H 0.017 0.983 26 H -0.028 1.028 27 H 0.036 0.964 28 H 0.107 0.893 29 H 0.111 0.889 30 H 0.135 0.865 31 H 0.103 0.897 32 H 0.160 0.840 33 H 0.156 0.844 34 H 0.091 0.909 35 H 0.188 0.812 36 H 0.104 0.896 37 H 0.110 0.890 38 H 0.099 0.901 39 H 0.034 0.966 Dipole moment (debyes) X Y Z Total from point charges 12.446 -13.271 -7.192 19.564 hybrid contribution -2.450 -2.113 0.803 3.333 sum 9.996 -15.384 -6.389 19.427 Atomic orbital electron populations 1.70883 1.08162 1.29677 1.49217 1.27386 0.96427 1.06790 0.92855 0.82831 0.74552 0.70800 0.77195 1.18788 1.20804 1.20929 1.22307 0.95154 0.91668 1.54104 0.91812 1.19545 0.90773 0.90327 0.92656 1.61926 1.26522 1.02156 1.35087 1.22394 0.95633 1.00275 0.89685 1.22154 0.94820 0.80535 1.03173 1.48257 1.46177 1.08991 1.29721 1.21523 0.82156 0.83033 0.84518 1.90653 1.53478 1.31190 1.70195 1.22296 0.97250 0.92504 0.91379 0.84529 1.24670 1.02317 1.04045 0.91080 1.88380 1.85209 1.12349 1.20619 1.24860 1.04355 0.94897 0.87755 1.60322 1.64752 1.02196 1.04689 1.21654 0.91292 0.98284 0.88395 1.22466 0.95722 0.90057 1.00489 0.93789 0.98256 1.02762 0.96361 0.89341 0.88904 0.86484 0.89730 0.83984 0.84390 0.90853 0.81206 0.89552 0.88988 0.90090 0.96605 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.77 13.65 21.45 0.29 -56.48 16 2 C -0.04 -2.07 5.46 84.65 0.46 -1.60 16 3 Si 1.12 48.17 29.90 68.60 2.05 50.22 16 4 H -0.26 -10.16 7.11 99.48 0.71 -9.45 16 5 H -0.28 -11.77 7.11 99.48 0.71 -11.06 16 6 H -0.28 -11.94 7.11 99.48 0.71 -11.23 16 7 C -0.59 -31.84 8.41 25.60 0.22 -31.62 16 8 H 0.06 3.31 7.13 -2.91 -0.02 3.28 16 9 C 0.19 9.70 4.04 85.56 0.35 10.04 16 10 N -0.53 -20.87 4.62 -899.83 -4.16 -25.03 16 11 C 0.05 1.59 5.46 86.38 0.47 2.06 16 12 C 0.12 2.61 6.20 86.35 0.54 3.15 16 13 N -0.60 -14.89 3.01 -817.94 -2.46 -17.35 16 14 C 0.50 12.21 6.70 87.66 0.59 12.79 16 15 O -0.57 -17.29 14.97 -3.02 -0.05 -17.33 16 16 C 0.08 1.52 2.83 44.88 0.13 1.64 16 17 H 0.14 2.12 7.02 -2.39 -0.02 2.10 16 18 C -0.07 -1.33 6.36 72.50 0.46 -0.87 16 19 S -0.29 -5.77 23.43 -56.49 -1.32 -7.09 16 20 C 0.12 1.98 8.28 127.48 1.06 3.04 16 21 N -0.68 -12.69 6.84 -500.53 -3.42 -16.11 16 22 C 0.13 3.46 6.60 86.35 0.57 4.03 16 23 C 0.04 1.40 5.62 86.39 0.49 1.88 16 24 H 0.25 15.51 7.22 -92.71 -0.67 14.84 16 25 H 0.00 -0.03 7.83 -2.39 -0.02 -0.05 16 26 H -0.05 -2.46 7.99 -2.39 -0.02 -2.48 16 27 H 0.02 0.62 8.14 -2.38 -0.02 0.60 16 28 H 0.09 3.13 6.67 -2.39 -0.02 3.11 16 29 H 0.09 2.02 8.14 -2.39 -0.02 2.00 16 30 H 0.12 1.85 4.42 -2.39 -0.01 1.84 16 31 H 0.08 1.81 7.85 -2.39 -0.02 1.79 16 32 H 0.14 2.16 7.02 -2.39 -0.02 2.14 16 33 H 0.14 1.75 8.14 -2.39 -0.02 1.73 16 34 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 35 H 0.36 7.37 7.06 -89.70 -0.63 6.74 16 36 H 0.09 2.24 8.14 -2.39 -0.02 2.22 16 37 H 0.09 2.51 7.06 -2.39 -0.02 2.49 16 38 H 0.08 2.70 7.99 -2.39 -0.02 2.68 16 39 H 0.02 0.56 8.14 -2.39 -0.02 0.54 16 Total: -1.00 -66.42 317.81 -3.22 -69.64 By element: Atomic # 1 Polarization: 14.46 SS G_CDS: 0.53 Total: 14.99 kcal Atomic # 6 Polarization: -0.77 SS G_CDS: 5.32 Total: 4.54 kcal Atomic # 7 Polarization: -105.22 SS G_CDS: -9.75 Total: -114.97 kcal Atomic # 8 Polarization: -17.29 SS G_CDS: -0.05 Total: -17.33 kcal Atomic # 14 Polarization: 48.17 SS G_CDS: 2.05 Total: 50.22 kcal Atomic # 16 Polarization: -5.77 SS G_CDS: -1.32 Total: -7.09 kcal Total: -66.42 -3.22 -69.64 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000134822437.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.978 kcal (2) G-P(sol) polarization free energy of solvation -66.422 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.444 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.222 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.644 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.666 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.06 seconds