Wall clock time and date at job start Wed Apr 15 2020 11:47:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 120.00588 * 2 1 4 4 H 1.48501 * 109.46758 * 269.72240 * 3 2 1 5 5 H 1.48499 * 109.47026 * 29.72088 * 3 2 1 6 6 H 1.48496 * 109.47474 * 149.72124 * 3 2 1 7 7 C 1.37884 * 119.99573 * 179.72306 * 2 1 3 8 8 H 1.07999 * 120.00052 * 180.28126 * 7 2 1 9 9 C 1.50696 * 119.99746 * 0.27650 * 7 2 1 10 10 N 1.46905 * 109.46934 * 180.02562 * 9 7 2 11 11 C 1.46899 * 110.99561 * 294.29930 * 10 9 7 12 12 C 1.53242 * 109.34008 * 172.74816 * 11 10 9 13 13 N 1.47079 * 108.52164 * 53.82791 * 12 11 10 14 14 C 1.34777 * 120.88229 * 128.79311 * 13 12 11 15 15 O 1.21276 * 120.00051 * 180.02562 * 14 13 12 16 16 C 1.50700 * 119.99740 * 0.02625 * 14 13 12 17 17 H 1.08999 * 108.77286 * 319.29686 * 16 14 13 18 18 C 1.54068 * 108.81458 * 77.69829 * 16 14 13 19 19 S 1.83701 * 103.49431 * 124.76414 * 18 16 14 20 20 C 1.84111 * 94.87618 * 18.34153 * 19 18 16 21 21 N 1.46596 * 108.81315 * 200.89548 * 16 14 13 22 22 C 1.47085 * 118.23631 * 308.81844 * 13 12 11 23 23 C 1.46901 * 111.00069 * 169.99972 * 10 9 7 24 24 H 0.97001 * 120.00651 * 179.97438 * 1 2 3 25 25 H 1.09000 * 109.47319 * 299.99477 * 9 7 2 26 26 H 1.08999 * 109.47742 * 60.00602 * 9 7 2 27 27 H 1.08997 * 109.49502 * 292.70447 * 11 10 9 28 28 H 1.08998 * 109.49418 * 52.78985 * 11 10 9 29 29 H 1.09006 * 109.62815 * 294.12243 * 12 11 10 30 30 H 1.08993 * 109.63029 * 173.54023 * 12 11 10 31 31 H 1.08997 * 110.61884 * 243.26083 * 18 16 14 32 32 H 1.09003 * 110.61812 * 6.26078 * 18 16 14 33 33 H 1.08997 * 111.13262 * 83.28056 * 20 19 18 34 34 H 1.09005 * 111.13310 * 207.41761 * 20 19 18 35 35 H 1.00894 * 111.00188 * 331.15494 * 21 16 14 36 36 H 1.08999 * 109.62654 * 291.46933 * 22 13 12 37 37 H 1.09003 * 109.62449 * 170.89493 * 22 13 12 38 38 H 1.08998 * 109.49120 * 307.21243 * 23 10 9 39 39 H 1.08994 * 109.49106 * 67.29142 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 2.5027 2.0428 -1.4001 5 1 1.4439 2.6543 0.6941 6 1 3.5439 1.4417 0.7059 7 6 2.0045 -1.1941 0.0058 8 1 3.0845 -1.1942 0.0104 9 6 1.2508 -2.4991 0.0058 10 7 2.2054 -3.6158 0.0131 11 6 2.9821 -3.6525 -1.2332 12 6 4.0837 -4.7109 -1.1137 13 7 3.4645 -5.9884 -0.7289 14 6 3.7175 -7.1163 -1.4220 15 8 3.1979 -8.1608 -1.0909 16 6 4.6462 -7.0793 -2.6083 17 1 4.4493 -6.1723 -3.1798 18 6 6.1001 -7.0407 -2.1002 19 16 6.8834 -8.4791 -2.9322 20 6 5.5849 -8.6364 -4.2280 21 7 4.3736 -8.2421 -3.4584 22 6 2.5615 -6.0022 0.4319 23 6 1.5197 -4.8929 0.2515 24 1 -0.4851 -0.8400 -0.0004 25 1 0.6205 -2.5547 0.8933 26 1 0.6280 -2.5591 -0.8867 27 1 2.3240 -3.9048 -2.0647 28 1 3.4334 -2.6761 -1.4094 29 1 4.8016 -4.4078 -0.3515 30 1 4.5892 -4.8233 -2.0728 31 1 6.5868 -6.1125 -2.3995 32 1 6.1315 -7.1599 -1.0171 33 1 5.7689 -7.9496 -5.0541 34 1 5.5075 -9.6638 -4.5841 35 1 4.0236 -9.0151 -2.9125 36 1 3.1331 -5.8232 1.3426 37 1 2.0605 -6.9682 0.4946 38 1 0.9105 -4.8161 1.1520 39 1 0.8820 -5.1279 -0.6006 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000134822456.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:47:18 Heat of formation + Delta-G solvation = -12.418932 kcal Electronic energy + Delta-G solvation = -20968.777875 eV Core-core repulsion = 17844.754527 eV Total energy + Delta-G solvation = -3124.023348 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 285.125 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.60396 -38.08580 -36.47365 -34.78579 -32.74759 -31.43754 -30.41069 -28.17189 -26.59061 -25.31325 -23.72919 -23.20242 -22.00127 -20.65885 -19.16654 -17.86204 -17.33614 -16.84087 -16.33427 -15.89869 -15.21889 -14.88002 -14.68166 -14.28199 -14.24303 -14.02111 -13.72778 -13.63923 -13.30694 -12.98799 -12.68061 -12.47978 -12.19332 -11.86371 -11.48463 -11.43270 -11.13319 -10.83415 -10.82163 -10.69125 -10.48533 -10.15614 -9.94656 -9.16846 -8.93715 -8.61728 -8.46993 -8.19218 -7.53480 -6.45999 -4.16412 1.34557 1.76784 2.35249 2.72910 3.37736 3.42061 3.57538 3.58808 4.05805 4.11896 4.40475 4.51865 4.63627 4.66691 5.01879 5.03636 5.06796 5.09186 5.17267 5.30703 5.33377 5.45369 5.54547 5.62813 5.81730 5.99849 6.08588 6.23813 6.27517 6.43069 6.67743 6.85308 6.93539 7.25004 7.61127 7.78280 7.91170 8.17330 8.45479 8.76124 9.54855 10.93084 Molecular weight = 285.13amu Principal moments of inertia in cm(-1) A = 0.028470 B = 0.003667 C = 0.003411 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 983.255349 B = 7634.183420 C = 8206.699987 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.912 5.912 2 C 0.015 3.985 3 Si 1.074 2.926 4 H -0.288 1.288 5 H -0.284 1.284 6 H -0.287 1.287 7 C -0.592 4.592 8 H 0.058 0.942 9 C 0.183 3.817 10 N -0.528 5.528 11 C 0.050 3.950 12 C 0.105 3.895 13 N -0.600 5.600 14 C 0.518 3.482 15 O -0.540 6.540 16 C 0.058 3.942 17 H 0.118 0.882 18 C -0.076 4.076 19 S -0.344 6.344 20 C 0.120 3.880 21 N -0.656 5.656 22 C 0.119 3.881 23 C 0.039 3.961 24 H 0.267 0.733 25 H 0.022 0.978 26 H -0.019 1.019 27 H 0.026 0.974 28 H 0.101 0.899 29 H 0.081 0.919 30 H 0.081 0.919 31 H 0.108 0.892 32 H 0.107 0.893 33 H 0.109 0.891 34 H 0.119 0.881 35 H 0.370 0.630 36 H 0.076 0.924 37 H 0.090 0.910 38 H 0.082 0.918 39 H 0.028 0.972 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.982 -14.003 -6.183 18.839 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.189 4.189 3 Si 0.903 3.097 4 H -0.215 1.215 5 H -0.210 1.210 6 H -0.213 1.213 7 C -0.630 4.630 8 H 0.077 0.923 9 C 0.058 3.942 10 N -0.253 5.253 11 C -0.079 4.079 12 C -0.018 4.018 13 N -0.333 5.333 14 C 0.304 3.696 15 O -0.417 6.417 16 C -0.058 4.058 17 H 0.136 0.864 18 C -0.227 4.227 19 S -0.121 6.121 20 C -0.119 4.119 21 N -0.290 5.290 22 C -0.003 4.003 23 C -0.090 4.090 24 H 0.078 0.922 25 H 0.040 0.960 26 H -0.001 1.001 27 H 0.044 0.956 28 H 0.119 0.881 29 H 0.100 0.900 30 H 0.099 0.901 31 H 0.127 0.873 32 H 0.125 0.875 33 H 0.127 0.873 34 H 0.137 0.863 35 H 0.195 0.805 36 H 0.094 0.906 37 H 0.108 0.892 38 H 0.101 0.899 39 H 0.046 0.954 Dipole moment (debyes) X Y Z Total from point charges 11.533 -13.113 -5.894 18.431 hybrid contribution -0.869 -1.410 -0.226 1.671 sum 10.664 -14.523 -6.120 19.029 Atomic orbital electron populations 1.70770 1.06949 1.30496 1.46622 1.25867 0.96456 1.02774 0.93783 0.83459 0.74700 0.74875 0.76715 1.21494 1.20985 1.21320 1.21957 0.94777 0.90822 1.55470 0.92343 1.19841 0.90639 0.88747 0.94999 1.62003 1.27395 1.02393 1.33532 1.22342 0.95066 0.99188 0.91333 1.22140 0.96505 0.82500 1.00607 1.48167 1.46333 1.08258 1.30511 1.20213 0.81887 0.83775 0.83696 1.90669 1.52127 1.30226 1.68725 1.22369 0.92748 0.97528 0.93170 0.86439 1.24762 0.94819 0.99086 1.04048 1.88429 1.41935 1.43472 1.38257 1.25318 0.84791 1.05458 0.96361 1.60982 1.28737 1.10431 1.28896 1.21802 0.91539 0.99646 0.87354 1.22439 0.95036 0.90534 1.01033 0.92250 0.95962 1.00108 0.95582 0.88085 0.90027 0.90107 0.87314 0.87481 0.87258 0.86287 0.80546 0.90585 0.89169 0.89944 0.95428 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -26.97 13.65 55.43 0.76 -26.21 16 2 C 0.02 0.42 5.46 -17.82 -0.10 0.32 16 3 Si 1.07 24.25 29.90 -169.99 -5.08 19.17 16 4 H -0.29 -6.25 7.11 56.52 0.40 -5.84 16 5 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 6 H -0.29 -6.15 7.11 56.52 0.40 -5.75 16 7 C -0.59 -15.82 8.41 -34.44 -0.29 -16.11 16 8 H 0.06 1.54 7.13 -52.49 -0.37 1.17 16 9 C 0.18 4.48 4.04 -4.97 -0.02 4.46 16 10 N -0.53 -10.46 4.62 -235.77 -1.09 -11.55 16 11 C 0.05 0.85 5.46 -3.70 -0.02 0.83 16 12 C 0.11 1.33 6.21 -3.60 -0.02 1.31 16 13 N -0.60 -8.16 3.01 -172.46 -0.52 -8.68 16 14 C 0.52 6.99 6.64 -10.99 -0.07 6.92 16 15 O -0.54 -8.79 15.02 5.56 0.08 -8.70 16 16 C 0.06 0.61 2.75 -68.47 -0.19 0.42 16 17 H 0.12 1.13 6.52 -51.93 -0.34 0.79 16 18 C -0.08 -0.72 6.45 37.72 0.24 -0.47 16 19 S -0.34 -3.57 23.45 -107.50 -2.52 -6.09 16 20 C 0.12 0.98 8.23 61.13 0.50 1.48 16 21 N -0.66 -6.81 6.88 -108.68 -0.75 -7.56 16 22 C 0.12 1.72 6.60 -3.60 -0.02 1.70 16 23 C 0.04 0.66 5.62 -3.70 -0.02 0.64 16 24 H 0.27 7.89 7.22 -40.82 -0.29 7.59 16 25 H 0.02 0.58 7.83 -51.93 -0.41 0.17 16 26 H -0.02 -0.49 8.00 -51.93 -0.42 -0.91 16 27 H 0.03 0.46 8.14 -51.93 -0.42 0.04 16 28 H 0.10 1.85 6.67 -51.93 -0.35 1.50 16 29 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 30 H 0.08 0.78 5.34 -51.93 -0.28 0.50 16 31 H 0.11 0.82 8.14 -51.93 -0.42 0.40 16 32 H 0.11 1.09 7.66 -51.93 -0.40 0.69 16 33 H 0.11 0.75 8.14 -51.93 -0.42 0.32 16 34 H 0.12 0.76 8.14 -51.93 -0.42 0.34 16 35 H 0.37 4.32 7.29 -39.30 -0.29 4.03 16 36 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 37 H 0.09 1.30 7.06 -51.93 -0.37 0.93 16 38 H 0.08 1.36 7.99 -51.93 -0.41 0.94 16 39 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 LS Contribution 319.39 15.07 4.81 4.81 Total: -1.00 -31.19 319.39 -9.99 -41.18 By element: Atomic # 1 Polarization: 7.83 SS G_CDS: -5.67 Total: 2.15 kcal Atomic # 6 Polarization: 1.50 SS G_CDS: -0.01 Total: 1.49 kcal Atomic # 7 Polarization: -52.40 SS G_CDS: -1.60 Total: -54.00 kcal Atomic # 8 Polarization: -8.79 SS G_CDS: 0.08 Total: -8.70 kcal Atomic # 14 Polarization: 24.25 SS G_CDS: -5.08 Total: 19.17 kcal Atomic # 16 Polarization: -3.57 SS G_CDS: -2.52 Total: -6.09 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -31.19 -9.99 -41.18 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000134822456.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.756 kcal (2) G-P(sol) polarization free energy of solvation -31.187 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.430 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.989 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.175 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.419 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds