Wall clock time and date at job start Wed Apr 15 2020 11:47:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 120.00588 * 2 1 4 4 H 1.48501 * 109.46758 * 269.72240 * 3 2 1 5 5 H 1.48499 * 109.47026 * 29.72088 * 3 2 1 6 6 H 1.48496 * 109.47474 * 149.72124 * 3 2 1 7 7 C 1.37884 * 119.99573 * 179.72306 * 2 1 3 8 8 H 1.07999 * 120.00052 * 180.28126 * 7 2 1 9 9 C 1.50696 * 119.99746 * 0.27650 * 7 2 1 10 10 N 1.46905 * 109.46934 * 180.02562 * 9 7 2 11 11 C 1.46899 * 110.99561 * 294.29930 * 10 9 7 12 12 C 1.53242 * 109.34008 * 172.74816 * 11 10 9 13 13 N 1.47079 * 108.52164 * 53.82791 * 12 11 10 14 14 C 1.34777 * 120.88229 * 128.79311 * 13 12 11 15 15 O 1.21276 * 120.00051 * 180.02562 * 14 13 12 16 16 C 1.50700 * 119.99740 * 0.02625 * 14 13 12 17 17 H 1.08999 * 108.77286 * 319.29686 * 16 14 13 18 18 C 1.54068 * 108.81458 * 77.69829 * 16 14 13 19 19 S 1.83701 * 103.49431 * 124.76414 * 18 16 14 20 20 C 1.84111 * 94.87618 * 18.34153 * 19 18 16 21 21 N 1.46596 * 108.81315 * 200.89548 * 16 14 13 22 22 C 1.47085 * 118.23631 * 308.81844 * 13 12 11 23 23 C 1.46901 * 111.00069 * 169.99972 * 10 9 7 24 24 H 0.97001 * 120.00651 * 179.97438 * 1 2 3 25 25 H 1.09000 * 109.47319 * 299.99477 * 9 7 2 26 26 H 1.08999 * 109.47742 * 60.00602 * 9 7 2 27 27 H 1.08997 * 109.49502 * 292.70447 * 11 10 9 28 28 H 1.08998 * 109.49418 * 52.78985 * 11 10 9 29 29 H 1.09006 * 109.62815 * 294.12243 * 12 11 10 30 30 H 1.08993 * 109.63029 * 173.54023 * 12 11 10 31 31 H 1.08997 * 110.61884 * 243.26083 * 18 16 14 32 32 H 1.09003 * 110.61812 * 6.26078 * 18 16 14 33 33 H 1.08997 * 111.13262 * 83.28056 * 20 19 18 34 34 H 1.09005 * 111.13310 * 207.41761 * 20 19 18 35 35 H 1.00894 * 111.00188 * 331.15494 * 21 16 14 36 36 H 1.08999 * 109.62654 * 291.46933 * 22 13 12 37 37 H 1.09003 * 109.62449 * 170.89493 * 22 13 12 38 38 H 1.08998 * 109.49120 * 307.21243 * 23 10 9 39 39 H 1.08994 * 109.49106 * 67.29142 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 2.5027 2.0428 -1.4001 5 1 1.4439 2.6543 0.6941 6 1 3.5439 1.4417 0.7059 7 6 2.0045 -1.1941 0.0058 8 1 3.0845 -1.1942 0.0104 9 6 1.2508 -2.4991 0.0058 10 7 2.2054 -3.6158 0.0131 11 6 2.9821 -3.6525 -1.2332 12 6 4.0837 -4.7109 -1.1137 13 7 3.4645 -5.9884 -0.7289 14 6 3.7175 -7.1163 -1.4220 15 8 3.1979 -8.1608 -1.0909 16 6 4.6462 -7.0793 -2.6083 17 1 4.4493 -6.1723 -3.1798 18 6 6.1001 -7.0407 -2.1002 19 16 6.8834 -8.4791 -2.9322 20 6 5.5849 -8.6364 -4.2280 21 7 4.3736 -8.2421 -3.4584 22 6 2.5615 -6.0022 0.4319 23 6 1.5197 -4.8929 0.2515 24 1 -0.4851 -0.8400 -0.0004 25 1 0.6205 -2.5547 0.8933 26 1 0.6280 -2.5591 -0.8867 27 1 2.3240 -3.9048 -2.0647 28 1 3.4334 -2.6761 -1.4094 29 1 4.8016 -4.4078 -0.3515 30 1 4.5892 -4.8233 -2.0728 31 1 6.5868 -6.1125 -2.3995 32 1 6.1315 -7.1599 -1.0171 33 1 5.7689 -7.9496 -5.0541 34 1 5.5075 -9.6638 -4.5841 35 1 4.0236 -9.0151 -2.9125 36 1 3.1331 -5.8232 1.3426 37 1 2.0605 -6.9682 0.4946 38 1 0.9105 -4.8161 1.1520 39 1 0.8820 -5.1279 -0.6006 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000134822456.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:47:17 Heat of formation + Delta-G solvation = -36.214389 kcal Electronic energy + Delta-G solvation = -20969.809723 eV Core-core repulsion = 17844.754527 eV Total energy + Delta-G solvation = -3125.055196 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 285.125 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.69342 -39.40676 -37.39683 -36.29970 -34.60666 -32.59764 -31.38117 -29.72933 -27.51672 -26.83648 -24.93855 -24.57603 -23.52761 -21.88677 -20.24774 -19.06138 -18.73025 -18.19292 -17.35181 -16.86895 -16.36928 -16.15763 -16.07907 -15.65180 -15.47321 -15.38157 -15.14397 -14.54690 -14.35748 -14.14662 -13.94799 -13.46222 -13.41938 -13.21677 -13.02695 -12.95892 -12.53332 -12.39781 -12.20043 -12.11400 -11.88904 -11.57773 -11.04765 -10.82368 -10.57355 -9.93936 -9.91697 -9.19750 -8.96434 -8.66702 -6.38314 0.63688 1.04327 1.34239 1.56945 1.65671 1.68512 1.83092 2.57712 2.80533 3.02530 3.13420 3.18192 3.30259 3.77293 3.89964 3.92196 4.06575 4.09875 4.13847 4.32118 4.36525 4.38889 4.43266 4.46613 4.62060 4.71227 4.77053 4.82894 4.97236 5.03677 5.20449 5.33898 5.72729 5.81221 5.92672 6.19668 6.30779 6.39681 6.58754 6.84066 7.43024 8.72280 Molecular weight = 285.13amu Principal moments of inertia in cm(-1) A = 0.028470 B = 0.003667 C = 0.003411 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 983.255349 B = 7634.183420 C = 8206.699987 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.941 5.941 2 C -0.038 4.038 3 Si 1.123 2.877 4 H -0.272 1.272 5 H -0.288 1.288 6 H -0.266 1.266 7 C -0.595 4.595 8 H 0.064 0.936 9 C 0.194 3.806 10 N -0.532 5.532 11 C 0.048 3.952 12 C 0.117 3.883 13 N -0.602 5.602 14 C 0.518 3.482 15 O -0.570 6.570 16 C 0.065 3.935 17 H 0.134 0.866 18 C -0.066 4.066 19 S -0.386 6.386 20 C 0.132 3.868 21 N -0.664 5.664 22 C 0.128 3.872 23 C 0.042 3.958 24 H 0.253 0.747 25 H -0.001 1.001 26 H -0.046 1.046 27 H 0.016 0.984 28 H 0.089 0.911 29 H 0.094 0.906 30 H 0.119 0.881 31 H 0.134 0.866 32 H 0.100 0.900 33 H 0.128 0.872 34 H 0.135 0.865 35 H 0.362 0.638 36 H 0.086 0.914 37 H 0.092 0.908 38 H 0.081 0.919 39 H 0.016 0.984 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.358 -14.012 -7.111 20.624 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.235 4.235 3 Si 0.944 3.056 4 H -0.197 1.197 5 H -0.214 1.214 6 H -0.190 1.190 7 C -0.633 4.633 8 H 0.082 0.918 9 C 0.067 3.933 10 N -0.257 5.257 11 C -0.081 4.081 12 C -0.005 4.005 13 N -0.334 5.334 14 C 0.306 3.694 15 O -0.449 6.449 16 C -0.051 4.051 17 H 0.151 0.849 18 C -0.217 4.217 19 S -0.164 6.164 20 C -0.107 4.107 21 N -0.297 5.297 22 C 0.005 3.995 23 C -0.087 4.087 24 H 0.062 0.938 25 H 0.017 0.983 26 H -0.028 1.028 27 H 0.034 0.966 28 H 0.107 0.893 29 H 0.112 0.888 30 H 0.137 0.863 31 H 0.152 0.848 32 H 0.118 0.882 33 H 0.146 0.854 34 H 0.153 0.847 35 H 0.185 0.815 36 H 0.104 0.896 37 H 0.110 0.890 38 H 0.099 0.901 39 H 0.034 0.966 Dipole moment (debyes) X Y Z Total from point charges 13.936 -13.151 -6.839 20.345 hybrid contribution -1.651 -1.501 0.046 2.232 sum 12.285 -14.652 -6.793 20.291 Atomic orbital electron populations 1.70905 1.08175 1.29662 1.49145 1.27416 0.96428 1.06826 0.92845 0.82849 0.74210 0.70744 0.77753 1.19733 1.21445 1.19023 1.22282 0.95158 0.91671 1.54195 0.91784 1.19543 0.90802 0.90349 0.92606 1.61943 1.26318 1.02184 1.35244 1.22407 0.95692 1.00368 0.89643 1.22146 0.94740 0.80464 1.03158 1.48212 1.46179 1.08812 1.30243 1.20728 0.81709 0.83022 0.83989 1.90659 1.53372 1.31313 1.69590 1.22415 0.92493 0.98281 0.91894 0.84864 1.24784 0.93867 0.99567 1.03515 1.88618 1.43268 1.44607 1.39895 1.25508 0.82573 1.07062 0.95510 1.61046 1.29766 1.10122 1.28779 1.21639 0.91195 0.98312 0.88341 1.22464 0.95761 0.90050 1.00467 0.93820 0.98277 1.02831 0.96612 0.89290 0.88786 0.86304 0.84757 0.88174 0.85367 0.84680 0.81484 0.89568 0.89016 0.90072 0.96615 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.91 13.65 21.45 0.29 -56.62 16 2 C -0.04 -2.10 5.46 84.66 0.46 -1.64 16 3 Si 1.12 47.99 29.90 68.60 2.05 50.04 16 4 H -0.27 -10.84 7.11 99.48 0.71 -10.13 16 5 H -0.29 -12.48 7.11 99.48 0.71 -11.77 16 6 H -0.27 -10.34 7.11 99.48 0.71 -9.63 16 7 C -0.60 -31.97 8.41 25.60 0.22 -31.76 16 8 H 0.06 3.31 7.13 -2.91 -0.02 3.29 16 9 C 0.19 9.77 4.04 85.55 0.35 10.12 16 10 N -0.53 -21.08 4.62 -899.83 -4.16 -25.24 16 11 C 0.05 1.57 5.46 86.38 0.47 2.05 16 12 C 0.12 2.62 6.21 86.35 0.54 3.16 16 13 N -0.60 -15.14 3.01 -817.93 -2.46 -17.60 16 14 C 0.52 12.94 6.64 87.66 0.58 13.52 16 15 O -0.57 -17.92 15.02 -3.02 -0.05 -17.96 16 16 C 0.06 1.17 2.75 44.59 0.12 1.29 16 17 H 0.13 2.02 6.52 -2.39 -0.02 2.01 16 18 C -0.07 -1.05 6.45 72.34 0.47 -0.58 16 19 S -0.39 -7.19 23.45 -56.49 -1.32 -8.51 16 20 C 0.13 1.78 8.23 127.32 1.05 2.83 16 21 N -0.66 -12.22 6.88 -497.77 -3.42 -15.65 16 22 C 0.13 3.56 6.60 86.35 0.57 4.13 16 23 C 0.04 1.42 5.62 86.38 0.49 1.90 16 24 H 0.25 15.55 7.22 -92.71 -0.67 14.88 16 25 H 0.00 -0.04 7.83 -2.39 -0.02 -0.06 16 26 H -0.05 -2.52 8.00 -2.39 -0.02 -2.54 16 27 H 0.02 0.55 8.14 -2.39 -0.02 0.53 16 28 H 0.09 3.16 6.67 -2.39 -0.02 3.14 16 29 H 0.09 1.97 8.14 -2.38 -0.02 1.95 16 30 H 0.12 1.78 5.34 -2.39 -0.01 1.77 16 31 H 0.13 1.45 8.14 -2.39 -0.02 1.43 16 32 H 0.10 1.76 7.66 -2.39 -0.02 1.74 16 33 H 0.13 1.29 8.14 -2.39 -0.02 1.27 16 34 H 0.14 1.38 8.14 -2.38 -0.02 1.36 16 35 H 0.36 7.90 7.29 -89.70 -0.65 7.25 16 36 H 0.09 2.25 8.14 -2.39 -0.02 2.23 16 37 H 0.09 2.57 7.06 -2.39 -0.02 2.55 16 38 H 0.08 2.74 7.99 -2.39 -0.02 2.72 16 39 H 0.02 0.57 8.14 -2.39 -0.02 0.55 16 Total: -1.00 -68.73 319.39 -3.26 -71.99 By element: Atomic # 1 Polarization: 14.03 SS G_CDS: 0.50 Total: 14.54 kcal Atomic # 6 Polarization: -0.29 SS G_CDS: 5.30 Total: 5.02 kcal Atomic # 7 Polarization: -105.36 SS G_CDS: -9.75 Total: -115.11 kcal Atomic # 8 Polarization: -17.92 SS G_CDS: -0.05 Total: -17.96 kcal Atomic # 14 Polarization: 47.99 SS G_CDS: 2.05 Total: 50.04 kcal Atomic # 16 Polarization: -7.19 SS G_CDS: -1.32 Total: -8.51 kcal Total: -68.73 -3.26 -71.99 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000134822456.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.775 kcal (2) G-P(sol) polarization free energy of solvation -68.728 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.952 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.262 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.990 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.214 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds