Wall clock time and date at job start Wed Apr 15 2020 11:47:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.34950 * 126.03656 * 2 1 4 4 C 1.35313 * 107.74707 * 179.97438 * 3 2 1 5 5 C 1.50695 * 126.04409 * 180.02562 * 4 3 2 6 6 H 1.09004 * 109.46914 * 340.00058 * 5 4 3 7 7 C 1.53000 * 109.47212 * 99.99676 * 5 4 3 8 8 O 1.42902 * 109.47034 * 55.00462 * 7 5 4 9 9 N 1.46905 * 109.47374 * 219.99970 * 5 4 3 10 10 C 1.46902 * 110.99800 * 154.99628 * 9 5 4 11 11 C 1.53006 * 109.46626 * 179.97438 * 10 9 5 12 12 C 1.52999 * 109.46626 * 179.97438 * 11 10 9 13 13 S 1.81009 * 109.46965 * 179.97438 * 12 11 10 14 14 C 1.76195 * 99.99997 * 180.02562 * 13 12 11 15 15 H 1.07999 * 119.99978 * 0.02562 * 14 13 12 16 16 C 1.38799 * 119.99985 * 179.97438 * 14 13 12 17 17 N 1.31631 * 119.99674 * 0.02562 * 16 14 13 18 18 Si 1.86793 * 120.00231 * 180.02562 * 16 14 13 19 19 H 1.48497 * 109.47102 * 90.00382 * 18 16 14 20 20 H 1.48500 * 109.47585 * 210.00423 * 18 16 14 21 21 H 1.48506 * 109.47219 * 330.00545 * 18 16 14 22 22 C 1.39874 * 107.91714 * 0.26299 * 4 3 2 23 23 N 1.30837 * 108.20423 * 359.55417 * 22 4 3 24 24 H 1.09004 * 109.47400 * 90.00112 * 1 2 3 25 25 H 1.08995 * 109.47227 * 209.99949 * 1 2 3 26 26 H 1.09005 * 109.47285 * 330.00334 * 1 2 3 27 27 H 1.08004 * 126.12618 * 359.95224 * 3 2 1 28 28 H 1.09004 * 109.46902 * 175.00431 * 7 5 4 29 29 H 1.09000 * 109.46976 * 294.99933 * 7 5 4 30 30 H 0.96699 * 113.99827 * 180.02562 * 8 7 5 31 31 H 1.00891 * 110.99988 * 278.95043 * 9 5 4 32 32 H 1.09000 * 109.47263 * 60.00269 * 10 9 5 33 33 H 1.09001 * 109.47582 * 299.99548 * 10 9 5 34 34 H 1.08993 * 109.46955 * 300.00347 * 11 10 9 35 35 H 1.09000 * 109.47050 * 60.00176 * 11 10 9 36 36 H 1.08993 * 109.47839 * 299.99931 * 12 11 10 37 37 H 1.09000 * 109.47160 * 60.00369 * 12 11 10 38 38 H 0.97009 * 119.99706 * 179.97438 * 17 16 14 39 39 H 1.08003 * 125.89579 * 179.73767 * 22 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2589 1.0913 0.0000 4 6 3.5437 0.6666 0.0006 5 6 4.7680 1.5453 0.0013 6 1 4.5002 2.5418 -0.3501 7 6 5.3276 1.6390 1.4222 8 8 5.5698 0.3240 1.9265 9 7 5.7849 0.9690 -0.8885 10 6 6.6991 2.0064 -1.3846 11 6 7.7419 1.3692 -2.3053 12 6 8.6936 2.4497 -2.8225 13 16 9.9278 1.6959 -3.9111 14 6 10.8634 3.1236 -4.3477 15 1 10.5905 4.0903 -3.9509 16 6 11.9520 3.0058 -5.2008 17 7 12.2849 1.8275 -5.6840 18 14 12.9444 4.5193 -5.6632 19 1 14.0465 4.7062 -4.6856 20 1 13.5139 4.3414 -7.0230 21 1 12.0618 5.7135 -5.6484 22 6 3.5346 -0.7321 -0.0052 23 7 2.2891 -1.1328 0.0006 24 1 -0.3634 0.0000 -1.0277 25 1 -0.3633 -0.8899 0.5138 26 1 -0.3634 0.8900 0.5138 27 1 1.9281 2.1194 -0.0007 28 1 6.2617 2.2006 1.4085 29 1 4.6075 2.1472 2.0635 30 1 5.9259 0.3069 2.8253 31 1 6.2931 0.2302 -0.4261 32 1 7.2010 2.4816 -0.5418 33 1 6.1329 2.7546 -1.9394 34 1 8.3079 0.6212 -1.7502 35 1 7.2403 0.8936 -3.1481 36 1 8.1273 3.1974 -3.3777 37 1 9.1953 2.9257 -1.9799 38 1 13.0455 1.7453 -6.2805 39 1 4.4054 -1.3710 -0.0102 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000358794605.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:47:27 Heat of formation + Delta-G solvation = 19.358796 kcal Electronic energy + Delta-G solvation = -19423.714580 eV Core-core repulsion = 16301.069218 eV Total energy + Delta-G solvation = -3122.645362 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 285.125 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.24757 -38.05905 -35.78853 -33.67034 -32.58344 -32.37850 -30.32417 -28.16967 -26.53199 -25.65886 -24.54706 -22.42431 -21.37064 -20.76157 -19.88521 -17.63830 -17.43255 -16.90197 -15.81745 -15.58437 -15.18387 -14.86931 -14.76659 -14.49410 -14.25871 -13.88493 -13.45004 -13.15966 -12.90108 -12.86307 -12.54014 -12.38944 -12.05995 -11.77105 -11.55747 -11.25669 -11.04923 -10.76353 -10.62561 -10.57751 -10.38487 -10.16622 -9.49310 -9.42445 -9.02720 -8.47681 -8.26355 -8.23848 -6.48232 -6.19343 -3.89077 1.83116 2.44973 2.84196 3.23439 3.24415 3.31075 3.60313 4.00021 4.25449 4.31769 4.47401 4.70994 4.86325 4.88186 4.95182 5.10729 5.16348 5.17599 5.22548 5.29568 5.39224 5.41945 5.55352 5.61930 5.79610 5.80740 5.99479 6.04825 6.19356 6.39923 6.66471 6.67653 6.80881 6.90856 7.14010 7.42126 7.51591 7.63577 7.70594 8.39853 9.26720 10.88814 Molecular weight = 285.13amu Principal moments of inertia in cm(-1) A = 0.034505 B = 0.002503 C = 0.002461 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 811.277608 B =11185.810955 C =11376.511074 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.105 3.895 2 N -0.383 5.383 3 C 0.046 3.954 4 C -0.206 4.206 5 C 0.168 3.832 6 H 0.091 0.909 7 C 0.050 3.950 8 O -0.562 6.562 9 N -0.678 5.678 10 C 0.063 3.937 11 C -0.095 4.095 12 C -0.111 4.111 13 S -0.133 6.133 14 C -0.516 4.516 15 H 0.072 0.928 16 C 0.070 3.930 17 N -0.869 5.869 18 Si 0.918 3.082 19 H -0.277 1.277 20 H -0.282 1.282 21 H -0.272 1.272 22 C 0.091 3.909 23 N -0.310 5.310 24 H 0.072 0.928 25 H 0.086 0.914 26 H 0.083 0.917 27 H 0.168 0.832 28 H 0.046 0.954 29 H 0.045 0.955 30 H 0.376 0.624 31 H 0.350 0.650 32 H 0.026 0.974 33 H 0.070 0.930 34 H 0.063 0.937 35 H 0.074 0.926 36 H 0.059 0.941 37 H 0.057 0.943 38 H 0.267 0.733 39 H 0.180 0.820 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.156 0.189 16.005 26.529 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.037 4.037 2 N -0.166 5.166 3 C -0.100 4.100 4 C -0.218 4.218 5 C 0.056 3.944 6 H 0.109 0.891 7 C -0.030 4.030 8 O -0.367 6.367 9 N -0.309 5.309 10 C -0.067 4.067 11 C -0.134 4.134 12 C -0.260 4.260 13 S 0.095 5.905 14 C -0.664 4.664 15 H 0.090 0.910 16 C -0.139 4.139 17 N -0.505 5.505 18 Si 0.745 3.255 19 H -0.203 1.203 20 H -0.208 1.208 21 H -0.197 1.197 22 C -0.095 4.095 23 N -0.131 5.131 24 H 0.090 0.910 25 H 0.104 0.896 26 H 0.101 0.899 27 H 0.185 0.815 28 H 0.065 0.935 29 H 0.063 0.937 30 H 0.223 0.777 31 H 0.170 0.830 32 H 0.044 0.956 33 H 0.088 0.912 34 H 0.082 0.918 35 H 0.093 0.907 36 H 0.078 0.922 37 H 0.076 0.924 38 H 0.077 0.923 39 H 0.197 0.803 Dipole moment (debyes) X Y Z Total from point charges -22.480 -2.146 14.404 26.785 hybrid contribution 1.753 3.437 1.397 4.103 sum -20.727 1.291 15.801 26.095 Atomic orbital electron populations 1.21768 0.74690 1.04065 1.03143 1.48353 1.06332 1.03933 1.57970 1.22171 0.90935 0.93192 1.03684 1.19723 0.92985 0.94297 1.14828 1.19800 0.89621 0.96481 0.88489 0.89115 1.22911 0.98854 0.84621 0.96642 1.86482 1.87477 1.27653 1.35094 1.60423 1.17167 1.12700 1.40591 1.22071 0.93497 0.93896 0.97243 1.21234 0.95242 0.97675 0.99267 1.23217 1.00285 1.00598 1.01945 1.84662 1.31652 1.16344 1.57811 1.22692 1.16037 0.93954 1.33708 0.91024 1.25019 0.96653 0.96956 0.95249 1.70031 1.26886 1.22672 1.30926 0.86170 0.79755 0.81742 0.77875 1.20321 1.20773 1.19723 1.23602 0.94462 0.94582 0.96897 1.77372 1.01960 1.08040 1.25707 0.90990 0.89568 0.89862 0.81482 0.93547 0.93709 0.77726 0.83006 0.95585 0.91203 0.91788 0.90709 0.92177 0.92433 0.92342 0.80258 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 0.62 11.47 59.85 0.69 1.31 16 2 N -0.38 -4.01 4.01 -68.16 -0.27 -4.28 16 3 C 0.05 0.45 11.40 -17.22 -0.20 0.25 16 4 C -0.21 -2.32 4.84 -105.06 -0.51 -2.82 16 5 C 0.17 1.72 2.85 -68.86 -0.20 1.53 16 6 H 0.09 0.85 7.79 -51.93 -0.40 0.44 16 7 C 0.05 0.43 6.71 37.16 0.25 0.68 16 8 O -0.56 -5.10 11.96 -35.23 -0.42 -5.52 16 9 N -0.68 -8.29 5.99 -107.94 -0.65 -8.94 16 10 C 0.06 0.84 5.48 -3.82 -0.02 0.82 16 11 C -0.10 -1.59 5.48 -26.73 -0.15 -1.73 16 12 C -0.11 -2.27 5.67 37.16 0.21 -2.06 16 13 S -0.13 -3.54 21.44 -107.50 -2.30 -5.85 16 14 C -0.52 -14.96 9.50 30.94 0.29 -14.67 16 15 H 0.07 2.01 7.80 -52.49 -0.41 1.60 16 16 C 0.07 2.02 5.49 -17.43 -0.10 1.92 16 17 N -0.87 -26.29 13.22 55.49 0.73 -25.56 16 18 Si 0.92 21.71 29.55 -169.99 -5.02 16.68 16 19 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 20 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 21 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 22 C 0.09 1.16 10.97 -17.36 -0.19 0.97 16 23 N -0.31 -4.13 12.58 30.63 0.39 -3.75 16 24 H 0.07 0.37 8.14 -51.93 -0.42 -0.06 16 25 H 0.09 0.48 8.14 -51.93 -0.42 0.05 16 26 H 0.08 0.27 8.14 -51.93 -0.42 -0.15 16 27 H 0.17 1.03 8.06 -52.48 -0.42 0.61 16 28 H 0.05 0.40 7.35 -51.93 -0.38 0.02 16 29 H 0.04 0.34 8.14 -51.93 -0.42 -0.08 16 30 H 0.38 1.96 9.12 45.56 0.42 2.37 16 31 H 0.35 4.34 7.94 -39.30 -0.31 4.03 16 32 H 0.03 0.33 7.36 -51.93 -0.38 -0.06 16 33 H 0.07 0.92 8.06 -51.93 -0.42 0.50 16 34 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 35 H 0.07 1.32 8.14 -51.93 -0.42 0.90 16 36 H 0.06 1.21 8.14 -51.92 -0.42 0.79 16 37 H 0.06 1.15 8.14 -51.92 -0.42 0.73 16 38 H 0.27 7.50 8.31 -40.82 -0.34 7.17 16 39 H 0.18 2.17 8.06 -52.48 -0.42 1.75 16 LS Contribution 344.91 15.07 5.20 5.20 Total: -1.00 -35.09 344.91 -7.52 -42.61 By element: Atomic # 1 Polarization: 8.47 SS G_CDS: -5.26 Total: 3.21 kcal Atomic # 6 Polarization: -13.90 SS G_CDS: 0.09 Total: -13.81 kcal Atomic # 7 Polarization: -42.73 SS G_CDS: 0.20 Total: -42.53 kcal Atomic # 8 Polarization: -5.10 SS G_CDS: -0.42 Total: -5.52 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -5.02 Total: 16.68 kcal Atomic # 16 Polarization: -3.54 SS G_CDS: -2.30 Total: -5.85 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -35.09 -7.52 -42.61 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358794605.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.971 kcal (2) G-P(sol) polarization free energy of solvation -35.090 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.881 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.522 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.612 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.359 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds