Wall clock time and date at job start Wed Apr 15 2020 11:47:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.34950 * 126.03656 * 2 1 4 4 C 1.35313 * 107.74707 * 179.97438 * 3 2 1 5 5 C 1.50695 * 126.04409 * 180.02562 * 4 3 2 6 6 H 1.09004 * 109.46914 * 340.00058 * 5 4 3 7 7 C 1.53000 * 109.47212 * 99.99676 * 5 4 3 8 8 O 1.42902 * 109.47034 * 55.00462 * 7 5 4 9 9 N 1.46905 * 109.47374 * 219.99970 * 5 4 3 10 10 C 1.46902 * 110.99800 * 154.99628 * 9 5 4 11 11 C 1.53006 * 109.46626 * 179.97438 * 10 9 5 12 12 C 1.52999 * 109.46626 * 179.97438 * 11 10 9 13 13 S 1.81009 * 109.46965 * 179.97438 * 12 11 10 14 14 C 1.76195 * 99.99997 * 180.02562 * 13 12 11 15 15 H 1.07999 * 119.99978 * 0.02562 * 14 13 12 16 16 C 1.38799 * 119.99985 * 179.97438 * 14 13 12 17 17 N 1.31631 * 119.99674 * 0.02562 * 16 14 13 18 18 Si 1.86793 * 120.00231 * 180.02562 * 16 14 13 19 19 H 1.48497 * 109.47102 * 90.00382 * 18 16 14 20 20 H 1.48500 * 109.47585 * 210.00423 * 18 16 14 21 21 H 1.48506 * 109.47219 * 330.00545 * 18 16 14 22 22 C 1.39874 * 107.91714 * 0.26299 * 4 3 2 23 23 N 1.30837 * 108.20423 * 359.55417 * 22 4 3 24 24 H 1.09004 * 109.47400 * 90.00112 * 1 2 3 25 25 H 1.08995 * 109.47227 * 209.99949 * 1 2 3 26 26 H 1.09005 * 109.47285 * 330.00334 * 1 2 3 27 27 H 1.08004 * 126.12618 * 359.95224 * 3 2 1 28 28 H 1.09004 * 109.46902 * 175.00431 * 7 5 4 29 29 H 1.09000 * 109.46976 * 294.99933 * 7 5 4 30 30 H 0.96699 * 113.99827 * 180.02562 * 8 7 5 31 31 H 1.00891 * 110.99988 * 278.95043 * 9 5 4 32 32 H 1.09000 * 109.47263 * 60.00269 * 10 9 5 33 33 H 1.09001 * 109.47582 * 299.99548 * 10 9 5 34 34 H 1.08993 * 109.46955 * 300.00347 * 11 10 9 35 35 H 1.09000 * 109.47050 * 60.00176 * 11 10 9 36 36 H 1.08993 * 109.47839 * 299.99931 * 12 11 10 37 37 H 1.09000 * 109.47160 * 60.00369 * 12 11 10 38 38 H 0.97009 * 119.99706 * 179.97438 * 17 16 14 39 39 H 1.08003 * 125.89579 * 179.73767 * 22 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2589 1.0913 0.0000 4 6 3.5437 0.6666 0.0006 5 6 4.7680 1.5453 0.0013 6 1 4.5002 2.5418 -0.3501 7 6 5.3276 1.6390 1.4222 8 8 5.5698 0.3240 1.9265 9 7 5.7849 0.9690 -0.8885 10 6 6.6991 2.0064 -1.3846 11 6 7.7419 1.3692 -2.3053 12 6 8.6936 2.4497 -2.8225 13 16 9.9278 1.6959 -3.9111 14 6 10.8634 3.1236 -4.3477 15 1 10.5905 4.0903 -3.9509 16 6 11.9520 3.0058 -5.2008 17 7 12.2849 1.8275 -5.6840 18 14 12.9444 4.5193 -5.6632 19 1 14.0465 4.7062 -4.6856 20 1 13.5139 4.3414 -7.0230 21 1 12.0618 5.7135 -5.6484 22 6 3.5346 -0.7321 -0.0052 23 7 2.2891 -1.1328 0.0006 24 1 -0.3634 0.0000 -1.0277 25 1 -0.3633 -0.8899 0.5138 26 1 -0.3634 0.8900 0.5138 27 1 1.9281 2.1194 -0.0007 28 1 6.2617 2.2006 1.4085 29 1 4.6075 2.1472 2.0635 30 1 5.9259 0.3069 2.8253 31 1 6.2931 0.2302 -0.4261 32 1 7.2010 2.4816 -0.5418 33 1 6.1329 2.7546 -1.9394 34 1 8.3079 0.6212 -1.7502 35 1 7.2403 0.8936 -3.1481 36 1 8.1273 3.1974 -3.3777 37 1 9.1953 2.9257 -1.9799 38 1 13.0455 1.7453 -6.2805 39 1 4.4054 -1.3710 -0.0102 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000358794605.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:47:27 Heat of formation + Delta-G solvation = -7.572764 kcal Electronic energy + Delta-G solvation = -19424.882420 eV Core-core repulsion = 16301.069218 eV Total energy + Delta-G solvation = -3123.813202 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 285.125 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -42.02886 -38.85610 -36.69475 -34.64689 -34.52623 -33.49301 -31.28713 -29.00433 -27.78663 -27.17627 -25.79348 -23.25161 -22.54531 -21.65810 -20.70191 -19.52739 -18.31395 -17.64147 -16.88260 -16.84392 -16.39943 -16.25823 -15.90252 -15.50505 -15.31516 -15.08898 -14.70837 -14.20711 -13.86708 -13.62761 -13.49912 -13.44623 -13.21173 -12.94580 -12.89230 -12.84517 -12.54904 -12.40968 -12.28369 -11.76277 -11.42114 -11.33255 -11.12767 -10.82199 -10.28686 -10.23039 -9.32514 -9.09228 -8.64981 -8.35621 -6.11982 1.07159 1.32469 1.40601 1.50097 1.76632 1.82181 1.99272 2.30402 2.98386 3.19486 3.36478 3.63210 3.78079 4.05824 4.11743 4.22584 4.24821 4.37075 4.42342 4.47613 4.49333 4.54383 4.58125 4.69645 4.72727 4.80848 4.84036 4.90594 5.05924 5.24327 5.28727 5.37592 5.41099 5.81616 6.18273 6.19707 6.30912 6.54271 6.88144 6.96586 7.06253 8.73837 Molecular weight = 285.13amu Principal moments of inertia in cm(-1) A = 0.034505 B = 0.002503 C = 0.002461 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 811.277608 B =11185.810955 C =11376.511074 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.095 3.905 2 N -0.385 5.385 3 C 0.055 3.945 4 C -0.224 4.224 5 C 0.168 3.832 6 H 0.105 0.895 7 C 0.054 3.946 8 O -0.581 6.581 9 N -0.687 5.687 10 C 0.078 3.922 11 C -0.085 4.085 12 C -0.084 4.084 13 S -0.205 6.205 14 C -0.536 4.536 15 H 0.074 0.926 16 C 0.012 3.988 17 N -0.909 5.909 18 Si 0.996 3.004 19 H -0.267 1.267 20 H -0.275 1.275 21 H -0.262 1.262 22 C 0.074 3.926 23 N -0.350 5.350 24 H 0.080 0.920 25 H 0.085 0.915 26 H 0.116 0.884 27 H 0.207 0.793 28 H 0.048 0.952 29 H 0.060 0.940 30 H 0.391 0.609 31 H 0.347 0.653 32 H 0.038 0.962 33 H 0.076 0.924 34 H 0.060 0.940 35 H 0.061 0.939 36 H 0.063 0.937 37 H 0.063 0.937 38 H 0.271 0.729 39 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.350 2.586 17.005 28.202 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.045 4.045 2 N -0.168 5.168 3 C -0.092 4.092 4 C -0.236 4.236 5 C 0.057 3.943 6 H 0.123 0.877 7 C -0.025 4.025 8 O -0.388 6.388 9 N -0.318 5.318 10 C -0.053 4.053 11 C -0.124 4.124 12 C -0.234 4.234 13 S 0.023 5.977 14 C -0.684 4.684 15 H 0.092 0.908 16 C -0.192 4.192 17 N -0.545 5.545 18 Si 0.818 3.182 19 H -0.192 1.192 20 H -0.200 1.200 21 H -0.186 1.186 22 C -0.111 4.111 23 N -0.172 5.172 24 H 0.099 0.901 25 H 0.104 0.896 26 H 0.134 0.866 27 H 0.223 0.777 28 H 0.067 0.933 29 H 0.078 0.922 30 H 0.240 0.760 31 H 0.166 0.834 32 H 0.056 0.944 33 H 0.095 0.905 34 H 0.078 0.922 35 H 0.080 0.920 36 H 0.082 0.918 37 H 0.082 0.918 38 H 0.080 0.920 39 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges -23.693 0.238 15.426 28.273 hybrid contribution 1.987 2.640 1.144 3.497 sum -21.706 2.879 16.570 27.459 Atomic orbital electron populations 1.22122 0.72372 1.05742 1.04238 1.48723 1.07722 1.03426 1.56901 1.22770 0.90313 0.94537 1.01612 1.19896 0.94132 0.93664 1.15941 1.19879 0.88651 0.96669 0.89088 0.87747 1.22845 0.99219 0.84522 0.95951 1.86456 1.87726 1.28126 1.36473 1.60366 1.17158 1.12517 1.41755 1.21848 0.92782 0.93817 0.96855 1.21123 0.95256 0.96563 0.99431 1.23136 0.98680 1.01193 1.00372 1.84725 1.34387 1.18299 1.60242 1.23040 1.16793 0.94309 1.34241 0.90789 1.26111 0.97749 1.00515 0.94873 1.70174 1.27591 1.25179 1.31567 0.84988 0.78034 0.77405 0.77800 1.19236 1.20022 1.18597 1.23623 0.94284 0.95611 0.97609 1.77283 1.02634 1.10057 1.27270 0.90144 0.89594 0.86564 0.77665 0.93336 0.92164 0.75970 0.83355 0.94358 0.90542 0.92172 0.92029 0.91821 0.91788 0.92021 0.81128 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.92 11.47 127.77 1.47 2.38 16 2 N -0.39 -7.42 4.01 -369.56 -1.48 -8.90 16 3 C 0.05 0.92 11.40 83.54 0.95 1.87 16 4 C -0.22 -4.71 4.84 -20.15 -0.10 -4.81 16 5 C 0.17 3.11 2.85 44.17 0.13 3.23 16 6 H 0.10 1.62 7.79 -2.38 -0.02 1.60 16 7 C 0.05 0.83 6.71 71.98 0.48 1.31 16 8 O -0.58 -9.88 11.96 -148.98 -1.78 -11.66 16 9 N -0.69 -15.99 5.99 -495.42 -2.97 -18.95 16 10 C 0.08 1.91 5.48 86.31 0.47 2.39 16 11 C -0.08 -2.77 5.48 30.60 0.17 -2.61 16 12 C -0.08 -3.40 5.67 71.98 0.41 -2.99 16 13 S -0.21 -11.16 21.44 -56.49 -1.21 -12.37 16 14 C -0.54 -31.31 9.50 67.95 0.65 -30.66 16 15 H 0.07 4.13 7.80 -2.91 -0.02 4.11 16 16 C 0.01 0.70 5.49 84.86 0.47 1.17 16 17 N -0.91 -55.70 13.22 21.65 0.29 -55.42 16 18 Si 1.00 44.22 29.55 68.60 2.03 46.25 16 19 H -0.27 -11.36 7.11 99.48 0.71 -10.65 16 20 H -0.28 -11.80 7.11 99.48 0.71 -11.09 16 21 H -0.26 -11.07 7.11 99.48 0.71 -10.36 16 22 C 0.07 1.89 10.97 85.24 0.94 2.83 16 23 N -0.35 -9.33 12.58 -57.02 -0.72 -10.04 16 24 H 0.08 0.65 8.14 -2.38 -0.02 0.63 16 25 H 0.09 0.83 8.14 -2.39 -0.02 0.81 16 26 H 0.12 0.34 8.14 -2.38 -0.02 0.32 16 27 H 0.21 1.64 8.06 -2.91 -0.02 1.62 16 28 H 0.05 0.72 7.35 -2.39 -0.02 0.70 16 29 H 0.06 0.73 8.14 -2.39 -0.02 0.72 16 30 H 0.39 3.60 9.12 -74.06 -0.68 2.92 16 31 H 0.35 8.45 7.94 -89.70 -0.71 7.74 16 32 H 0.04 0.86 7.36 -2.39 -0.02 0.85 16 33 H 0.08 1.81 8.06 -2.39 -0.02 1.79 16 34 H 0.06 2.01 8.14 -2.39 -0.02 1.99 16 35 H 0.06 2.18 8.14 -2.39 -0.02 2.16 16 36 H 0.06 2.51 8.14 -2.40 -0.02 2.49 16 37 H 0.06 2.49 8.14 -2.40 -0.02 2.47 16 38 H 0.27 15.39 8.31 -92.70 -0.77 14.62 16 39 H 0.17 4.38 8.06 -2.91 -0.02 4.36 16 Total: -1.00 -77.04 344.91 -0.15 -77.20 By element: Atomic # 1 Polarization: 20.14 SS G_CDS: -0.34 Total: 19.80 kcal Atomic # 6 Polarization: -31.92 SS G_CDS: 6.02 Total: -25.89 kcal Atomic # 7 Polarization: -88.44 SS G_CDS: -4.88 Total: -93.32 kcal Atomic # 8 Polarization: -9.88 SS G_CDS: -1.78 Total: -11.66 kcal Atomic # 14 Polarization: 44.22 SS G_CDS: 2.03 Total: 46.25 kcal Atomic # 16 Polarization: -11.16 SS G_CDS: -1.21 Total: -12.37 kcal Total: -77.04 -0.15 -77.20 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358794605.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.623 kcal (2) G-P(sol) polarization free energy of solvation -77.040 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.418 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.155 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.195 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.573 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds