Wall clock time and date at job start Wed Apr 15 2020 11:47:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.34942 * 126.03991 * 2 1 4 4 C 1.35316 * 107.74613 * 179.75096 * 3 2 1 5 5 C 1.50706 * 126.04256 * 180.27593 * 4 3 2 6 6 H 1.08999 * 109.46726 * 20.15947 * 5 4 3 7 7 C 1.53000 * 109.46912 * 260.16503 * 5 4 3 8 8 O 1.42902 * 109.47242 * 304.99864 * 7 5 4 9 9 N 1.46897 * 109.47024 * 140.16245 * 5 4 3 10 10 C 1.46901 * 110.99799 * 204.99620 * 9 5 4 11 11 C 1.53004 * 109.47069 * 180.02562 * 10 9 5 12 12 C 1.53004 * 109.46914 * 180.02562 * 11 10 9 13 13 S 1.80995 * 109.46866 * 180.02562 * 12 11 10 14 14 C 1.76201 * 99.99771 * 179.97438 * 13 12 11 15 15 H 1.08000 * 120.00551 * 0.02562 * 14 13 12 16 16 C 1.38810 * 119.99929 * 179.97438 * 14 13 12 17 17 N 1.31625 * 119.99829 * 359.97438 * 16 14 13 18 18 Si 1.86800 * 119.99901 * 180.02562 * 16 14 13 19 19 H 1.48504 * 109.47049 * 59.99907 * 18 16 14 20 20 H 1.48502 * 109.47028 * 179.97438 * 18 16 14 21 21 H 1.48492 * 109.47077 * 300.00088 * 18 16 14 22 22 C 1.39870 * 107.92161 * 0.39436 * 4 3 2 23 23 N 1.30836 * 108.20019 * 359.59732 * 22 4 3 24 24 H 1.09002 * 109.47159 * 269.97891 * 1 2 3 25 25 H 1.08999 * 109.46542 * 29.97403 * 1 2 3 26 26 H 1.08999 * 109.47324 * 149.97201 * 1 2 3 27 27 H 1.08002 * 126.12737 * 359.97438 * 3 2 1 28 28 H 1.09000 * 109.47540 * 64.99887 * 7 5 4 29 29 H 1.08998 * 109.47021 * 184.99770 * 7 5 4 30 30 H 0.96699 * 114.00089 * 180.02562 * 8 7 5 31 31 H 1.00897 * 111.00639 * 328.95356 * 9 5 4 32 32 H 1.09004 * 109.47478 * 300.00775 * 10 9 5 33 33 H 1.09001 * 109.46783 * 60.00551 * 10 9 5 34 34 H 1.08999 * 109.47175 * 299.99972 * 11 10 9 35 35 H 1.08993 * 109.46690 * 60.00460 * 11 10 9 36 36 H 1.08998 * 109.46826 * 300.00326 * 12 11 10 37 37 H 1.08996 * 109.47090 * 59.99794 * 12 11 10 38 38 H 0.97001 * 120.00225 * 179.97438 * 17 16 14 39 39 H 1.08002 * 125.90382 * 179.86983 * 22 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2590 1.0912 0.0000 4 6 3.5437 0.6664 0.0056 5 6 4.7681 1.5451 0.0135 6 1 4.4990 2.5399 0.3684 7 6 5.3332 1.6451 -1.4048 8 8 5.5772 0.3323 -1.9140 9 7 5.7815 0.9647 0.9047 10 6 6.6939 1.9998 1.4089 11 6 7.7331 1.3585 2.3308 12 6 8.6830 2.4366 2.8564 13 16 9.9127 1.6779 3.9463 14 6 10.8469 3.1036 4.3928 15 1 10.5751 4.0722 3.9999 16 6 11.9315 2.9821 5.2505 17 7 12.2618 1.8019 5.7306 18 14 12.9214 4.4937 5.7244 19 1 12.0352 5.4729 6.4032 20 1 14.0183 4.0987 6.6442 21 1 13.4974 5.1111 4.5029 22 6 3.5347 -0.7322 0.0000 23 7 2.2891 -1.1328 0.0001 24 1 -0.3633 -0.0004 1.0277 25 1 -0.3632 0.8902 -0.5134 26 1 -0.3634 -0.8897 -0.5143 27 1 1.9282 2.1193 -0.0004 28 1 4.6157 2.1561 -2.0467 29 1 6.2672 2.2065 -1.3850 30 1 5.9375 0.3192 -2.8113 31 1 5.3491 0.4622 1.6653 32 1 7.1990 2.4788 0.5701 33 1 6.1256 2.7456 1.9647 34 1 7.2282 0.8793 3.1695 35 1 8.3012 0.6130 1.7746 36 1 9.1878 2.9162 2.0178 37 1 8.1145 3.1819 3.4126 38 1 13.0200 1.7168 6.3296 39 1 4.4054 -1.3712 0.0004 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000358794606.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:47:29 Heat of formation + Delta-G solvation = -5.595574 kcal Electronic energy + Delta-G solvation = -19420.107730 eV Core-core repulsion = 16296.380266 eV Total energy + Delta-G solvation = -3123.727465 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 285.125 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.11461 -38.64396 -36.71420 -34.66743 -34.54272 -33.50991 -31.28559 -29.05504 -27.79318 -27.26051 -25.89602 -23.10108 -22.45828 -21.68215 -20.68816 -19.52594 -18.15058 -17.92141 -16.88072 -16.77619 -16.43571 -16.27535 -15.88160 -15.42191 -15.20137 -14.90242 -14.66309 -14.36713 -14.02429 -13.70906 -13.51070 -13.46729 -13.21335 -13.08560 -12.91585 -12.86922 -12.50337 -12.33134 -12.04718 -11.76024 -11.41300 -11.33604 -11.11721 -10.66742 -10.29295 -10.28842 -9.28300 -9.24400 -8.65046 -8.35369 -6.11901 1.00195 1.32295 1.42071 1.48984 1.74983 1.77884 1.90881 2.30557 2.98485 3.18475 3.37318 3.59787 3.76218 4.06043 4.06858 4.19281 4.32608 4.38344 4.45910 4.46559 4.51793 4.57174 4.66848 4.70365 4.71350 4.82360 4.86739 4.91864 5.00483 5.14140 5.26239 5.37531 5.40816 5.75617 6.15206 6.19505 6.25968 6.50726 6.82192 7.06254 7.13226 8.73858 Molecular weight = 285.13amu Principal moments of inertia in cm(-1) A = 0.034518 B = 0.002503 C = 0.002461 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 810.984117 B =11182.115919 C =11375.666286 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.094 3.906 2 N -0.383 5.383 3 C 0.063 3.937 4 C -0.247 4.247 5 C 0.168 3.832 6 H 0.074 0.926 7 C 0.094 3.906 8 O -0.573 6.573 9 N -0.681 5.681 10 C 0.077 3.923 11 C -0.084 4.084 12 C -0.085 4.085 13 S -0.204 6.204 14 C -0.537 4.537 15 H 0.074 0.926 16 C 0.013 3.987 17 N -0.908 5.908 18 Si 0.995 3.005 19 H -0.264 1.264 20 H -0.276 1.276 21 H -0.264 1.264 22 C 0.077 3.923 23 N -0.346 5.346 24 H 0.083 0.917 25 H 0.116 0.884 26 H 0.086 0.914 27 H 0.208 0.792 28 H 0.057 0.943 29 H 0.043 0.957 30 H 0.383 0.617 31 H 0.342 0.658 32 H 0.074 0.926 33 H 0.038 0.962 34 H 0.059 0.941 35 H 0.062 0.938 36 H 0.063 0.937 37 H 0.063 0.937 38 H 0.271 0.729 39 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.710 2.773 -15.498 28.461 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.046 4.046 2 N -0.165 5.165 3 C -0.084 4.084 4 C -0.259 4.259 5 C 0.058 3.942 6 H 0.092 0.908 7 C 0.015 3.985 8 O -0.379 6.379 9 N -0.312 5.312 10 C -0.053 4.053 11 C -0.123 4.123 12 C -0.234 4.234 13 S 0.024 5.976 14 C -0.685 4.685 15 H 0.092 0.908 16 C -0.192 4.192 17 N -0.545 5.545 18 Si 0.817 3.183 19 H -0.188 1.188 20 H -0.201 1.201 21 H -0.188 1.188 22 C -0.109 4.109 23 N -0.169 5.169 24 H 0.101 0.899 25 H 0.135 0.865 26 H 0.105 0.895 27 H 0.225 0.775 28 H 0.075 0.925 29 H 0.061 0.939 30 H 0.231 0.769 31 H 0.160 0.840 32 H 0.093 0.907 33 H 0.056 0.944 34 H 0.078 0.922 35 H 0.081 0.919 36 H 0.082 0.918 37 H 0.081 0.919 38 H 0.080 0.920 39 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges -24.246 0.210 -14.995 28.509 hybrid contribution 0.942 2.942 0.224 3.097 sum -23.304 3.151 -14.771 27.770 Atomic orbital electron populations 1.22157 0.72192 1.05839 1.04400 1.48782 1.07836 1.03418 1.56416 1.22820 0.90234 0.94625 1.00767 1.19999 0.94164 0.93849 1.17842 1.19845 0.86821 0.94988 0.92585 0.90810 1.22180 0.98403 0.84381 0.93549 1.86563 1.87317 1.28226 1.35801 1.60409 1.20710 1.27116 1.22999 1.21869 0.93585 0.92762 0.97127 1.21112 0.95834 0.96694 0.98616 1.23138 0.98776 1.01158 1.00344 1.84715 1.34857 1.18229 1.59753 1.23014 1.17180 0.94239 1.34089 0.90795 1.26111 0.97701 1.00495 0.94899 1.70160 1.27787 1.25085 1.31453 0.85047 0.77474 0.77310 0.78463 1.18848 1.20062 1.18838 1.23696 0.94306 0.95464 0.97394 1.77334 1.02565 1.09928 1.27029 0.89897 0.86526 0.89531 0.77529 0.92527 0.93884 0.76910 0.83976 0.90738 0.94429 0.92214 0.91902 0.91835 0.91859 0.92003 0.80859 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.79 11.47 127.77 1.47 2.26 16 2 N -0.38 -6.84 4.01 -369.56 -1.48 -8.32 16 3 C 0.06 0.98 11.40 83.54 0.95 1.93 16 4 C -0.25 -4.95 4.56 -20.14 -0.09 -5.04 16 5 C 0.17 3.18 2.84 44.17 0.13 3.31 16 6 H 0.07 1.16 7.79 -2.39 -0.02 1.14 16 7 C 0.09 1.65 6.79 71.98 0.49 2.14 16 8 O -0.57 -11.80 12.53 -148.98 -1.87 -13.67 16 9 N -0.68 -15.97 6.05 -495.43 -3.00 -18.97 16 10 C 0.08 1.93 5.48 86.30 0.47 2.41 16 11 C -0.08 -2.75 5.48 30.60 0.17 -2.58 16 12 C -0.08 -3.43 5.67 71.98 0.41 -3.02 16 13 S -0.20 -11.13 21.44 -56.49 -1.21 -12.34 16 14 C -0.54 -31.45 9.50 67.96 0.65 -30.80 16 15 H 0.07 4.13 7.80 -2.91 -0.02 4.10 16 16 C 0.01 0.73 5.49 84.86 0.47 1.20 16 17 N -0.91 -55.75 13.22 21.65 0.29 -55.47 16 18 Si 1.00 44.24 29.55 68.60 2.03 46.26 16 19 H -0.26 -11.18 7.11 99.48 0.71 -10.48 16 20 H -0.28 -11.81 7.11 99.48 0.71 -11.10 16 21 H -0.26 -11.19 7.11 99.48 0.71 -10.49 16 22 C 0.08 1.90 10.76 85.24 0.92 2.82 16 23 N -0.35 -8.80 12.58 -57.02 -0.72 -9.52 16 24 H 0.08 0.55 8.14 -2.39 -0.02 0.53 16 25 H 0.12 0.23 8.14 -2.39 -0.02 0.21 16 26 H 0.09 0.75 8.14 -2.39 -0.02 0.73 16 27 H 0.21 1.41 8.06 -2.91 -0.02 1.38 16 28 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 29 H 0.04 0.77 7.35 -2.39 -0.02 0.75 16 30 H 0.38 4.86 9.12 -74.06 -0.68 4.18 16 31 H 0.34 8.28 8.15 -89.70 -0.73 7.55 16 32 H 0.07 1.81 7.36 -2.38 -0.02 1.79 16 33 H 0.04 0.87 8.06 -2.39 -0.02 0.85 16 34 H 0.06 2.00 8.14 -2.39 -0.02 1.98 16 35 H 0.06 2.23 8.14 -2.39 -0.02 2.21 16 36 H 0.06 2.52 8.14 -2.40 -0.02 2.50 16 37 H 0.06 2.49 8.14 -2.40 -0.02 2.47 16 38 H 0.27 15.45 8.31 -92.71 -0.77 14.68 16 39 H 0.17 4.52 8.06 -2.91 -0.02 4.49 16 Total: -1.00 -76.87 345.36 -0.30 -77.17 By element: Atomic # 1 Polarization: 20.60 SS G_CDS: -0.35 Total: 20.25 kcal Atomic # 6 Polarization: -31.42 SS G_CDS: 6.02 Total: -25.40 kcal Atomic # 7 Polarization: -87.36 SS G_CDS: -4.91 Total: -92.27 kcal Atomic # 8 Polarization: -11.80 SS G_CDS: -1.87 Total: -13.67 kcal Atomic # 14 Polarization: 44.24 SS G_CDS: 2.03 Total: 46.26 kcal Atomic # 16 Polarization: -11.13 SS G_CDS: -1.21 Total: -12.34 kcal Total: -76.87 -0.30 -77.17 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358794606.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.578 kcal (2) G-P(sol) polarization free energy of solvation -76.875 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.297 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.299 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.174 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.596 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds